Coce024563.1
Basic Information
- Insect
- Cosmorhoe ocellata
- Gene Symbol
- -
- Assembly
- GCA_963675405.1
- Location
- OY776271.1:2271602-2274518[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.021 1.5 10.1 0.2 1 23 130 152 130 152 0.99 2 19 0.00031 0.021 15.9 0.1 2 23 179 200 178 200 0.97 3 19 0.0002 0.014 16.5 0.3 1 23 222 244 222 244 0.98 4 19 2.7e-07 1.8e-05 25.6 0.7 1 23 248 270 248 270 0.98 5 19 2.4e-05 0.0017 19.4 0.7 1 23 275 298 275 298 0.96 6 19 0.24 17 6.8 0.4 2 23 305 327 305 327 0.97 7 19 0.00046 0.032 15.4 0.3 2 23 335 357 335 357 0.97 8 19 0.00028 0.02 16.0 2.0 2 23 364 385 363 385 0.97 9 19 2.2 1.5e+02 3.8 0.4 1 8 391 398 391 399 0.91 10 19 0.21 15 7.0 0.8 1 23 448 470 448 470 0.93 11 19 0.02 1.4 10.2 0.3 3 23 499 520 497 520 0.95 12 19 0.00032 0.023 15.9 3.1 2 23 544 565 543 565 0.96 13 19 0.59 41 5.6 0.2 2 23 569 590 568 590 0.94 14 19 3.2 2.2e+02 3.3 4.5 1 23 595 618 595 618 0.90 15 19 0.68 47 5.4 3.8 2 23 629 651 628 651 0.94 16 19 0.23 16 6.9 0.2 1 23 657 680 657 680 0.95 17 19 1.6e-05 0.0011 20.0 3.0 2 23 685 706 684 706 0.97 18 19 0.0037 0.25 12.6 3.7 1 23 712 734 712 734 0.96 19 19 0.00021 0.014 16.5 1.2 1 23 740 763 740 763 0.97
Sequence Information
- Coding Sequence
- ATGATCCTCAAAGATGACGCCGGCTGTGATATCAAACTAACGGTTCTAAGAAATCCTATTCCATTAGATAGTCTCTTATGCGAAGAGGAAGATACTTCGAAGCATAATGTATCAAAAGTTaagaaaacattgaaaaaacaTAAGATTGTAGAAAGACCAGTTGAACTACAGTCTATCACGTTTCTGAAAGAACCGATATCACTCGACAAAGTAGATTTCAAAGACTCTTCATCCACAGTGACATTCAATGTAAAAACTGTCGAGAGATCTGTTGGAAAGCGGTTGAGAAAAGATAGAAAAGATGAAAAATATCCCCCTTGGGTGGAAAATGCTGCTACAATATTTGAGCTAACATACGTATACCCTTTCATTCATACAAGTAACAAATACAAATGTTTTGTTTGCTTAGAACCTTTCCTTGATGCACAAAATTTAAACCAACATACAATTACCCATGACTTTGAAGAAATAAGgcaaaaagtatataatacaGCTGTTAgtgatacaattttaaaagtagaTATAACTCATCTACAATGTCGAGTTTGCGATGAAACATTTAATGATCTACCAGAATTGAAGGGTCATTTAAGAAACCACGGAAAAAATACTGATTCGGATGCCCAAGATAATCTTATTCCGTTCAAACTTGGACACGAACCATTCCAATGCCAAATATGCGGAGAAGAATTTCAGAAGCTAAGACTTCTCGTAATACATATGAGTAAACACTTCAACAACTTCAGTTGTGAAGTTTGCGGAACTGTCTTTTCAACTAAGAAATCACTGAACCGTCATTTGCAAATACACAAAAACGGAACATTTCCTTGCGAAAAATGCGACAAAATTTTCAGTAACTCTTCAAAAAAGAACTTGCATATGCGCGGCGTCCATTTAAAGCATTTTCCGAGGAAATGTCCTATGTGCCCTGATAGATTCAACTCTGATTACATGAGGAGCAAACATCTGCGTATTGTCCACAACAGAACGGGCGGGCTGAACAGATGCGTGACTTGCGGGAAGGAATACGATCTGAAATACCAACTTCAGTTGCATATACGTTCTGTGCATTATCAGGAAAAGGACCAGGAGTGTCCAATTTGTCATTCGCGGTTCTTTTCGAAGTATCTACTGAGCAGGCATATGGTCACACACACTGGTGTGAGGAACTTTAAGTGTGAGGTGTGCGGGAAGGCGCAAAATTTTGTGTTCCCAGGAATCCCGGACAAGCGATCAAAGGGACGAACAAGCATATGGCAGTTGACGGTGAGCGAACGACAAAACGCCGCCACCTTTCTAGAGTGCACGACCGTGAAGCCATTCTTCTACCAACAAGCCAATTACAAATGCTTCTACTGCAACAAACTCTTCCCTGAAATACAAACAGTCCTTCAACACACTTCAGTGCATAACACTCCGGAGAGAACGTCACTGCTTAAAGAGTTTCTGAGAAAAGGCAAAAGAGTTATTAAGGTTGACATATCAGAACTTGCATGCAGGTTGTGTCAACAGAAGTATTCTGATCTTGATGATATAAAAAAGCACCTGACGACTGCGCACGAGAAGGAATTTAACTCGGCAGGAAATGGTCTGATGGCGTATAATTTGAGCTCAAACAATGGTATGCTTTCCTGCCATAAGTGCGCAAAGAGCTTTAACTCGTTCTTCCTGTTAAACCGACACATGAATGCACATTTTAGCGTAGTTTGCGAAACTTGTGGACTTGGCTTCATGTCTCACCTGCGTCTGGTGAACCACAAGATCGTCCACCAAAGCGGTGTGCACAAATGCGATAAATGTCAAGACGTGTTCCCAACGAAGTTGAAACTCCGCTACCACAACTTCAAGAAGCACGAAGTGAACCTTAAGAAAATAAAGCCATTGAAATGCCCTCACTGTTTAGAGCGATTCTCTGAGCATTACAAGAAAATGACACATCTTAAAGAAATTCATGGTATATCGTTTACTTTTGACTGTCAATTGTGCAAAGCTGCTTTGCCGACGCGACGAGCTTTAACAGAGCACACGACAAAAGTCCACACGCAAAGAATTCAGTGTAAAACCTGCGGGAAATGTTTTGGAACGCGATCGTTGCTAAAGATGCATACGAGAGGGCATACCGGTGAAAGAAACTATTTTTGCGCGATCTGCCAAAAAGCATACATGCACGCTAAGACATTAAGACATCACATGACTCTGCATAGCTCAGCTATGAAATTCACCTGCTCTGAATGTGGCAGCGGATTTCAGAATAGAAACGATTTCAATAAGCACATGAAACAATGGCATCCTCAATGGCAGTTTAAGGATATTCTTAAGAATTTTGCGTCTGAAATTAGCGCGAATCAGGCGTGA
- Protein Sequence
- MILKDDAGCDIKLTVLRNPIPLDSLLCEEEDTSKHNVSKVKKTLKKHKIVERPVELQSITFLKEPISLDKVDFKDSSSTVTFNVKTVERSVGKRLRKDRKDEKYPPWVENAATIFELTYVYPFIHTSNKYKCFVCLEPFLDAQNLNQHTITHDFEEIRQKVYNTAVSDTILKVDITHLQCRVCDETFNDLPELKGHLRNHGKNTDSDAQDNLIPFKLGHEPFQCQICGEEFQKLRLLVIHMSKHFNNFSCEVCGTVFSTKKSLNRHLQIHKNGTFPCEKCDKIFSNSSKKNLHMRGVHLKHFPRKCPMCPDRFNSDYMRSKHLRIVHNRTGGLNRCVTCGKEYDLKYQLQLHIRSVHYQEKDQECPICHSRFFSKYLLSRHMVTHTGVRNFKCEVCGKAQNFVFPGIPDKRSKGRTSIWQLTVSERQNAATFLECTTVKPFFYQQANYKCFYCNKLFPEIQTVLQHTSVHNTPERTSLLKEFLRKGKRVIKVDISELACRLCQQKYSDLDDIKKHLTTAHEKEFNSAGNGLMAYNLSSNNGMLSCHKCAKSFNSFFLLNRHMNAHFSVVCETCGLGFMSHLRLVNHKIVHQSGVHKCDKCQDVFPTKLKLRYHNFKKHEVNLKKIKPLKCPHCLERFSEHYKKMTHLKEIHGISFTFDCQLCKAALPTRRALTEHTTKVHTQRIQCKTCGKCFGTRSLLKMHTRGHTGERNYFCAICQKAYMHAKTLRHHMTLHSSAMKFTCSECGSGFQNRNDFNKHMKQWHPQWQFKDILKNFASEISANQA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -