Basic Information

Insect: Cosmorhoe ocellata
Gene Symbol: -
Assembly: GCA_963675405.1
Location: OY776272.1:1441018-1443811[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.01 0.72 11.1 0.2 1 23 217 240 217 240 0.97

2 11 0.06 4.2 8.7 8.0 1 23 260 282 260 282 0.97

3 11 9.3e-05 0.0064 17.6 1.6 1 23 290 313 290 313 0.96

4 11 0.00037 0.026 15.7 1.7 1 23 318 340 318 340 0.98

5 11 0.00023 0.016 16.3 3.8 1 23 346 368 346 368 0.98

6 11 1.6e-06 0.00011 23.1 1.6 1 23 374 396 374 396 0.95

7 11 1.8e-05 0.0013 19.8 0.3 1 23 402 424 402 424 0.99

8 11 4.7e-07 3.3e-05 24.8 0.3 1 23 430 452 430 452 0.98

9 11 0.00011 0.0075 17.4 0.2 1 23 458 480 458 480 0.98

10 11 0.0001 0.007 17.5 1.7 1 21 486 506 486 508 0.96

11 11 4.4e-07 3e-05 24.9 0.0 1 23 514 536 514 536 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.01	0.72	11.1	0.2	1	23	217	240	217	240	0.97
2	11	0.06	4.2	8.7	8.0	1	23	260	282	260	282	0.97
3	11	9.3e-05	0.0064	17.6	1.6	1	23	290	313	290	313	0.96
4	11	0.00037	0.026	15.7	1.7	1	23	318	340	318	340	0.98
5	11	0.00023	0.016	16.3	3.8	1	23	346	368	346	368	0.98
6	11	1.6e-06	0.00011	23.1	1.6	1	23	374	396	374	396	0.95
7	11	1.8e-05	0.0013	19.8	0.3	1	23	402	424	402	424	0.99
8	11	4.7e-07	3.3e-05	24.8	0.3	1	23	430	452	430	452	0.98
9	11	0.00011	0.0075	17.4	0.2	1	23	458	480	458	480	0.98
10	11	0.0001	0.007	17.5	1.7	1	21	486	506	486	508	0.96
11	11	4.4e-07	3e-05	24.9	0.0	1	23	514	536	514	536	0.98

Sequence Information

Coding Sequence: ATGGAGCTGAGCGTGGAAAGTTTCGACAAAATATGCAGAGCGTGCCTATGTGAATCTCCCATTATGAAATCTTTGTTTACAAAACCTGAGAACCAAGATCAGAGTTTACTGGACATATTTAGTTTAGCTGCGAATCTGAGCGTTAGAATGGAAGACGAGCTTCCGAAACAAGTAtgcggtgattgtgagctgaTGATACATAGGGCTGAAGAGTTCAGAAACCGTTGTTTAATCTCCGAAACGTTACTGAAAAAAGTGGTAGAAAACTCAAATCGGGGTCAGTATTTTGATACAATCCCATCAGAATGTTATAAAAACGATGATAAAACTAATGTATTCAGTGATTTTGAGCTCCAAGCGGATGAAAAGAATAAATCTTGTCCAAATTCCCATTTATTTGAGACAGAAGACAGTCAGAGAATAGATACTGCTATGCTGGATTATGTAAAGAAAGAAATGAGTTTTGATGCAGATGATGATTTTGAAAATGGTTTCGATGACGAGCCGTTAGCAACATTATCAATTGAGTTAAAAAAAGAAACTCAATTACCAAAGCCTCGACAAAggtctttaaaaaataaattacaatggaaaaacaagaaaaaagttatgaaaaaCAAAGATCTTTCTTCAAAGTCGTGTATAAAATTTGAATGCAAGAAATGTGATATTAATTTCGGAGATATGCTCTCGTGGGAGGACCACATACAAACACAACATCCCATTGCACTGAAAAATAATACGAAACTAGATAAAATCCAGGAAGACAAAAGATTATTCCAATGCTCATTATGTTTCCGTCGTTgtaaaacgaaaaaaacaCTTTCAAAACACTTCAAACTACACGAACTCACCGACAACGTGAAATATACATGCGATAAATGCAAACGCGAGTTCAAATACAAATCATTTCTTGAAAGTCACGTCATTTCTGTTCACATGCACAACGAATTCACATGCCATCTATGTACAGACAAGTTTACAACCAAAGAGAGTTTGGAAGCGCACATAGATAGTCATAAGGAGAAAAAGAAACATGTCTGCAATATTTGCAGTAAAGCATTTATAATGTTGTGCACTCTCAAAGACCATATGAGGAAACATACTGGTGAAAAACCTTTCTTATGTTCCACTTGTGGGAAGGGATTTAGTCAGAAAACTAACCTAGCCCAGCATACGAGAAGACATTTAGGTGTTAAACCGTACAAATGTGATATTTGTTCAAAAGGTTTCGTGTCCAAAGGCGAGCTGGACGCGCACAACAGGAAACACAGCGGCGCCCACCCTTTCGTCTGTGATGACTGCGGGAATGGTTTCACCACATCTAGCGCTCTGGTGAAGCACCGGCGGACCCACACGGGCGAGCGGCCCTACGCTTGCGACCTGTGCCCAATGCGTTTCGCAGCATCAGGCACTCTGAAAAACCACAGAAGAACCCACACCGGAGAAAGACCATTTCAGTGCTCATTGTGTGAGAAAGCTTTTGTTCAACGGACGGATTTGATCAGCCATATCCGTTGCCATACTGGTGAAAGGCCTTATATTTGCAACGAGTGTGGTCAGGCTTTCAGGAAAGCAGCGGCTTTGAAAGCTCATATTAGGATGCATGGGAAGGAATCGGGTACGGGTATGATGCATGGTCATGCTGTCCATTTGTTGCATGGCATGCATGAGGGGCAGTTACATGCTAGTTAA
Protein Sequence: MELSVESFDKICRACLCESPIMKSLFTKPENQDQSLLDIFSLAANLSVRMEDELPKQVCGDCELMIHRAEEFRNRCLISETLLKKVVENSNRGQYFDTIPSECYKNDDKTNVFSDFELQADEKNKSCPNSHLFETEDSQRIDTAMLDYVKKEMSFDADDDFENGFDDEPLATLSIELKKETQLPKPRQRSLKNKLQWKNKKKVMKNKDLSSKSCIKFECKKCDINFGDMLSWEDHIQTQHPIALKNNTKLDKIQEDKRLFQCSLCFRRCKTKKTLSKHFKLHELTDNVKYTCDKCKREFKYKSFLESHVISVHMHNEFTCHLCTDKFTTKESLEAHIDSHKEKKKHVCNICSKAFIMLCTLKDHMRKHTGEKPFLCSTCGKGFSQKTNLAQHTRRHLGVKPYKCDICSKGFVSKGELDAHNRKHSGAHPFVCDDCGNGFTTSSALVKHRRTHTGERPYACDLCPMRFAASGTLKNHRRTHTGERPFQCSLCEKAFVQRTDLISHIRCHTGERPYICNECGQAFRKAAALKAHIRMHGKESGTGMMHGHAVHLLHGMHEGQLHAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -