Coce024485.1
Basic Information
- Insect
- Cosmorhoe ocellata
- Gene Symbol
- -
- Assembly
- GCA_963675405.1
- Location
- OY776271.1:1503262-1508029[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.7 1.2e+02 4.1 1.3 1 23 42 65 42 65 0.92 2 19 0.035 2.4 9.5 0.1 2 23 92 114 91 114 0.95 3 19 0.00019 0.013 16.6 2.5 2 23 137 158 136 158 0.98 4 19 0.002 0.14 13.4 0.1 1 23 162 184 162 184 0.95 5 19 8.7e-06 0.00061 20.8 2.3 1 23 189 212 189 212 0.96 6 19 0.056 3.9 8.8 4.1 1 23 219 242 219 242 0.88 7 19 0.00014 0.0097 17.0 3.7 2 23 250 272 249 272 0.96 8 19 0.022 1.5 10.1 0.7 1 23 277 299 277 299 0.97 9 19 1.7 1.2e+02 4.1 3.3 1 13 305 317 305 319 0.93 10 19 0.76 52 5.3 0.1 1 23 388 411 388 411 0.91 11 19 0.1 7.1 8.0 0.9 2 23 438 460 437 460 0.93 12 19 0.0004 0.028 15.6 0.2 2 23 483 504 482 504 0.97 13 19 2.1e-05 0.0015 19.6 0.0 1 23 508 530 508 530 0.99 14 19 0.0019 0.13 13.5 1.8 1 23 535 558 535 558 0.96 15 19 1.3 88 4.6 0.4 2 20 565 583 564 587 0.74 16 19 7.4e-05 0.0051 17.9 1.8 2 23 595 617 595 617 0.97 17 19 7.6e-05 0.0052 17.9 0.7 1 23 623 645 623 645 0.97 18 19 3.5e-06 0.00024 22.1 1.9 1 23 651 673 651 673 0.98 19 19 0.00024 0.017 16.3 5.1 1 23 679 702 679 702 0.97
Sequence Information
- Coding Sequence
- atgCGTCTACTACCGGACAACTATTTAGTGAAACTGGAGCTGGAGAaacatagatataatatacGAAAAATATTGCAATGTTCAAACGCCACTCCGATCCGAACGCATTACGTTGGAAGTGGTTTCATCTGTTGCTTCTGTAAAGCTAATTTCCTTCAAGCTGCGGATCTCAAAACCCACACCATACAGGACCATGACGTCAAAACAAAAAGCACGTTCATGCAAAGCTCTGGACTGACTGGGTTCGCTGTAAAACTCGATATAACATCGCTGAGTTGCAACATTTGCAACTGGGCTGCGGGAACTTTGGAACATCTTATCGAACATCTCAACAACACACATCAGCAAGGGCTACATTCTGACATCAAAAGCCATATAGCCTGTTTTCAATTCGACGGAGACTCGATGAAGTGTCACATTTGTTCGATAGAATTCAACAGCTTCAAATATCTCCAAGCGCATATGAACAAACATTTCTCTAACTTTATTTGTGATGTCTGCGGTACTGGATTCATCAATCGGTTACAATTGAACATCCATTCTGATAAACATCAGAAGGGTAGTCATAAATGCAACGAATGCGATAAAGTTTTCTCATCACTGAGAAAGCTGAAGGCCCACGAACGCCTCTCGCACATATCCGCATCAATAAAGTACAAATGCTTTCATTGTGGAGAAAAGTTCAAGAACCGGAACATAAAAAAGAATCACATGATTGAATTTCATGGGGTTGAATTTGCGGATTTGAAATGTGACGCTTGCGATAAAACGTTCAAGAGTTCTAAAAATTTGCATTTGCATAAAAGACGAGATCACATGATGTTACGATACCCTTGCAGGTTGTGTGATAGTGTGTTCACTATAGCGCACCGACTTAAACGACACGAGTTAATACACACCGGTATCAAACAATTCAAGTGTGAATTATGCTCAAAGGCATACACGAGAAAATgTAAAGTGCCAATCAAACAGGAAACGGTGATAAAAGAGGAACAAGAAACGGAAGACTCGCGTAAAAAAGAATCTACAATCAAACTAGTGAAACATCTACATGATACCAAAGCACCTAACAGTATAACGTATAAGAGATTACAACAAAATCTGAGACAAATCATTCAACACTCAAACGCGACACCCATAAGACGTGTGAACGATTTAGATTATGTTTGCGCGTACTGCGAATACCAAGATCCGAACCCGGCGGAACTGAAGAAACATACAATAGCGACACACAGTAAAGAAACAGTCGTGACATCGACTAAGAAAATGTCCGCGCACGACTTACTCGTCAAACTTGACATTACATCCCTCAGCTGTAAGCTGTGCCATCAGAATTTAGACACCTTGGAACAGCTGCTGCAGCATCTGCAAGCCACGCACAGCAGAAAAATCCACACCGATGTTCAAAATCAGATTCTGCCCTTCAAATTTGGTGATGGGCCCCTCACATGCTTCATTTGTGACGCCTCTTTCCCAACATTTAAGATGTTAAACGTACATGTTAACACGCATTACCGTCACTACGTGTGTGATGTCTGCGGACTGGGTTTCGTCAACCCGAATAAACTTGGCAAACACATGTTGACGCATAAGACGGGCTCTTTCGTCTGTTCTCACTGCTTCAAAGACTTCGCTACAAATGTTAAGATGAAAGCCCATGTCAAGCAGGTCCACGGACCGAAGCTGCGTCTTAAATGCTGGCATTGCGACGAGAGATTTGGAGATATTCTCGTTAAGGAGAAGCATATGACCGAAGTTCACGGAATTGTCTTCCCGACGCCGAAATGCGATTCTTGCGATAAAGTGTTCATTCACCGCCGTGCACTCAACTCTCATATAAAAAGAGTTCATCTCATGGATCGAAGGCACGAATGCCCTGAATGTGATATGAAGTTTTTCGCGTCCGCAGAGTTAAGAAACCACATGCTCAAACATACAGGAGCACGACAGTTTCAATGCGAGGTTTGCCTAAAACGGTACTCGCGAAAGAGTAATCTCACCGAACATAAGAGAATACATGCGAATGATCGACGGTTTAAGTGCGAGCACTGTGGGATGACTTTCGTACAGAAGTGCAGTTGGAGAGGTCATATGCGCAATAAACATGGAGAAATTGCGTAG
- Protein Sequence
- MRLLPDNYLVKLELEKHRYNIRKILQCSNATPIRTHYVGSGFICCFCKANFLQAADLKTHTIQDHDVKTKSTFMQSSGLTGFAVKLDITSLSCNICNWAAGTLEHLIEHLNNTHQQGLHSDIKSHIACFQFDGDSMKCHICSIEFNSFKYLQAHMNKHFSNFICDVCGTGFINRLQLNIHSDKHQKGSHKCNECDKVFSSLRKLKAHERLSHISASIKYKCFHCGEKFKNRNIKKNHMIEFHGVEFADLKCDACDKTFKSSKNLHLHKRRDHMMLRYPCRLCDSVFTIAHRLKRHELIHTGIKQFKCELCSKAYTRKCKVPIKQETVIKEEQETEDSRKKESTIKLVKHLHDTKAPNSITYKRLQQNLRQIIQHSNATPIRRVNDLDYVCAYCEYQDPNPAELKKHTIATHSKETVVTSTKKMSAHDLLVKLDITSLSCKLCHQNLDTLEQLLQHLQATHSRKIHTDVQNQILPFKFGDGPLTCFICDASFPTFKMLNVHVNTHYRHYVCDVCGLGFVNPNKLGKHMLTHKTGSFVCSHCFKDFATNVKMKAHVKQVHGPKLRLKCWHCDERFGDILVKEKHMTEVHGIVFPTPKCDSCDKVFIHRRALNSHIKRVHLMDRRHECPECDMKFFASAELRNHMLKHTGARQFQCEVCLKRYSRKSNLTEHKRIHANDRRFKCEHCGMTFVQKCSWRGHMRNKHGEIA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -