Coce024489.1
Basic Information
- Insect
- Cosmorhoe ocellata
- Gene Symbol
- -
- Assembly
- GCA_963675405.1
- Location
- OY776271.1:1518945-1522961[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 4.6 3.2e+02 2.8 1.9 1 23 140 163 140 163 0.93 2 20 0.038 2.6 9.3 0.0 2 23 190 212 189 212 0.95 3 20 0.0096 0.66 11.2 2.6 2 23 235 256 234 256 0.98 4 20 0.012 0.86 10.9 0.1 1 23 260 282 260 282 0.94 5 20 6.5e-05 0.0045 18.1 2.6 1 23 287 310 287 310 0.97 6 20 0.00054 0.037 15.2 5.1 1 23 316 339 316 339 0.94 7 20 0.0017 0.12 13.6 2.2 2 23 347 369 346 369 0.95 8 20 0.00012 0.0082 17.2 0.5 1 23 375 397 375 397 0.96 9 20 1.1e-06 7.4e-05 23.7 4.9 1 23 403 425 403 425 0.99 10 20 0.078 5.4 8.4 1.0 1 21 431 450 431 451 0.95 11 20 4.6 3.2e+02 2.8 1.9 1 23 588 611 588 611 0.93 12 20 0.0075 0.52 11.6 0.0 2 23 638 660 637 660 0.95 13 20 0.0096 0.66 11.2 2.6 2 23 683 704 682 704 0.98 14 20 0.00057 0.039 15.1 0.2 1 23 708 730 708 730 0.93 15 20 2.5e-05 0.0017 19.4 2.9 1 23 735 758 735 758 0.97 16 20 0.0019 0.13 13.4 4.5 1 23 764 787 764 787 0.93 17 20 0.00022 0.015 16.4 1.4 2 23 795 817 794 817 0.96 18 20 3.7e-05 0.0025 18.8 0.6 1 23 823 845 823 845 0.97 19 20 2.1e-06 0.00014 22.8 3.2 1 23 851 873 851 873 0.99 20 20 0.01 0.72 11.1 4.8 1 23 879 902 879 902 0.98
Sequence Information
- Coding Sequence
- ATGATAATAAGTCTTGTTTTCTTTGTAGGTGTCGCCTTCAATGACAACAAAGCACTTAAAAAGAAAGTGACTAAAACAAGGAAAAAAGTTACATATGCATCAAATGATGTCAGAGATAAACCTACGAGGACGACaatcaaagtcaaaaaatCCCAAATAAAGACAAAACTATCTCGAAAAGCAAGCGAGactcaaagaaaaaaattaaaacttaatcCTACAAAAGATCACGCCCTAACAATTCTAAGGAAAGAAATAGAACTTTCAACTGAACAGTCATCAGCTaatcaaataacaaaaatagcAACTACATCGAAGCAGTGTCCGCAAGAGATCGATAAGCAACGTTATAACATTCGAAAGTTATTACAATATTCGAACGCGACACCGATTCGCGATCATTACGTTGCAACGGGGTATTCTTGCTGCTTCTGCAAAGCTAACTTCCTCAAAGCTGCAGAACTCAAAACGCACACAATTCAAGAACATGacgataaaacaaaaaaagagttCATGCAAAAAGTTCATTTGTTCAAGTTTATAGTAAAGCTCGATATAACATCTCTTATCTGCAACATTTGCGACATTAATATTGATAATCTCGATCAATTAATCGATCATCTGAATAGTGCTCATGAGAAAGGGCTTTACACCGACGTAAAAAGTCATATCGTGTCTTTTAAACTCGACGGAGAGGCAATGAAGTGTCATATTTGTTCAATAGAATACCAAAACTTCAAATTGTTACGAGAGCACATGAACAAGCATACCGTAAATTTTGTTTGCGATGCGTGCGGAGCTGGGTTCTTCAATCGCAGCCAGCTTTCAACTCACGCGGGGATACATAAAGTGGGTGCACATAAATGCGACACTTGTGACAAAACATTTAACTCTGCGTTAAAATTGAAGAATCATGTTCGTATAACACATTCCGCTATTTCTTTGCACAAATGTCATATATGTGATAAaagattcaaaacaaaaagaatGAAGGAAACTCACATGGAAGAAGGCCACGGAGTTGTATTTGCGGAACTGAACTGCAACGCTTGCAACCGCACCTTCAAAACAACTACTGGTCTTCGGAATCACAGAAAAAGAGATCATTTGATGGAAAGGCTACACAAGTGCGAGATATGTGGCCGTGAGTTTTTCACCGCAGCATTGTTAAAGAATCACGGAGTAACACACACGGGGCTGCGAGACTTCAAGTGCGATATATGCTCCAAAACGTTTACTAGGAAGCATACTCTTAGTGATCATATGAGGTCGCATACTGGCGACCGCCGATTCAAGTGCAGATACTGCAATAAGACCTTGCTAAAATCTACTTTAAAGGGCCATCTACGTGTCGCCTTCAAAGACAACAAACCAATTAAAAGGGAATCGAATGAATTATTGGAGGAAGCGTGGATAAAAGTTGAAGATGCATCAAATGTCACAGATAAACCTACGATCAAAGTCAGAAAACCCCAAATAAAGACAAAACAATCTCGAAAACAAGGCAAGACTAgaagagtaaaaataaaactgccaCCAGCTGTAACGATccgaaaaataaaagtaaattctACAAAAGTTCACGCCCTAACGATTCcaagaataaaaatagaacCTCCAAAATCACCCGCTAATCAAATAGTAAAAAATGCATCAAAGCAGTATCCATTACAAGAGCTCGATAAGCAACGTTATAACATTCGAAAGTTATTACAATATTCGAACGCGACACCGATTCGCAATCATTACGTTGCAACGGGGTATTCCTGCTGCTTCTGCAAAGCGAACTTCCTCAAAGCTGCAGAACTCAAAACGCACACAATTCAAGAACATgacgaaaaaacaaaaaacaaatttatgcaAGGAGTACATTTGTTCAAGTTTATCGTAAAGCTCGATATAACATCACTTATCTGCAACATTTGCGACATGAACACTGAAACCCTCGATCAACTAATCGATCATTTAAATAGTGTTCATGAGAAAGGGCTTTACACCGACGTAAAAAGTCAAATCGTGTCTTTTAAACTCGACGGAGAGGCAATGAAGTGTCATATTTGTTCAATAGAATACCAAAACTTCAAATTGTTACGAGAGCACATGAACAAGCATAGCGTGAACTTTATTTGCGACGAGTGCGGAGCTGGGTTCTTCAATCGCAGCCAGCTTACAACTCACTCGGGGATGCATAAAGTGGGCGCACACAAATGTGACATCTGTGATAAAACATTCAACTCGGCGTTAAAATTGAAGAACCACGTGCGTAAAACACATTCGGCTATTGCCTTACACAAGTGTCATATATGCGATAAaagattcaaaacaaaaaaggtgAAGGAAACCCACATGGAAGAAGCTCACGGAATTGTTTTTGCGGAAGTGAAATGCAACGCTTGCAACCGCACCTTCAAAACAGCTAATGGTCTTAGGAATCACAGAAAAAGGGATCATTTGATGGAAAGGCGACACAAGTGCGAGATATGTGGCCGTGGATTCTTCACCGCAGATATGTTGAAGAATCACGGAATAACACACTCGGGGCTGCGAGACTTCAAGTGTGAAGTGTGCTCTAAATCGTATACAAGGAAGCACGCTCTTAGAGAGCATATAAGGTCGCATACTGGCGATCGCCGATTTAGGTGCACATATTGCGATATGACCTTCTTACAAAAGTGTAGCTTGAAAGGCCATCTACGTAGCCGTCATGATGCCGAACTACAATAA
- Protein Sequence
- MIISLVFFVGVAFNDNKALKKKVTKTRKKVTYASNDVRDKPTRTTIKVKKSQIKTKLSRKASETQRKKLKLNPTKDHALTILRKEIELSTEQSSANQITKIATTSKQCPQEIDKQRYNIRKLLQYSNATPIRDHYVATGYSCCFCKANFLKAAELKTHTIQEHDDKTKKEFMQKVHLFKFIVKLDITSLICNICDINIDNLDQLIDHLNSAHEKGLYTDVKSHIVSFKLDGEAMKCHICSIEYQNFKLLREHMNKHTVNFVCDACGAGFFNRSQLSTHAGIHKVGAHKCDTCDKTFNSALKLKNHVRITHSAISLHKCHICDKRFKTKRMKETHMEEGHGVVFAELNCNACNRTFKTTTGLRNHRKRDHLMERLHKCEICGREFFTAALLKNHGVTHTGLRDFKCDICSKTFTRKHTLSDHMRSHTGDRRFKCRYCNKTLLKSTLKGHLRVAFKDNKPIKRESNELLEEAWIKVEDASNVTDKPTIKVRKPQIKTKQSRKQGKTRRVKIKLPPAVTIRKIKVNSTKVHALTIPRIKIEPPKSPANQIVKNASKQYPLQELDKQRYNIRKLLQYSNATPIRNHYVATGYSCCFCKANFLKAAELKTHTIQEHDEKTKNKFMQGVHLFKFIVKLDITSLICNICDMNTETLDQLIDHLNSVHEKGLYTDVKSQIVSFKLDGEAMKCHICSIEYQNFKLLREHMNKHSVNFICDECGAGFFNRSQLTTHSGMHKVGAHKCDICDKTFNSALKLKNHVRKTHSAIALHKCHICDKRFKTKKVKETHMEEAHGIVFAEVKCNACNRTFKTANGLRNHRKRDHLMERRHKCEICGRGFFTADMLKNHGITHSGLRDFKCEVCSKSYTRKHALREHIRSHTGDRRFRCTYCDMTFLQKCSLKGHLRSRHDAELQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -