Coce026153.1
Basic Information
- Insect
- Cosmorhoe ocellata
- Gene Symbol
- Sall1
- Assembly
- GCA_963675405.1
- Location
- OY776273.1:5150384-5155104[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00024 0.016 16.3 1.5 2 23 181 202 180 202 0.97 2 14 0.00011 0.0079 17.3 2.4 1 22 208 229 208 229 0.96 3 14 5.4e-05 0.0037 18.3 1.2 1 23 248 270 248 270 0.95 4 14 4.7e-05 0.0033 18.5 0.3 1 21 276 296 276 297 0.95 5 14 4e-07 2.8e-05 25.0 0.4 1 23 308 330 308 330 0.99 6 14 1e-05 0.00071 20.6 2.3 1 21 336 356 336 357 0.96 7 14 2.3e-05 0.0016 19.5 1.7 3 23 367 388 365 388 0.95 8 14 0.0095 0.66 11.2 6.5 1 23 394 416 394 416 0.97 9 14 4.3e-06 0.0003 21.8 1.0 1 23 422 444 422 444 0.97 10 14 0.02 1.4 10.2 2.7 1 21 450 470 450 472 0.93 11 14 2.5e-07 1.8e-05 25.6 3.1 1 23 478 501 478 501 0.98 12 14 6.6e-06 0.00046 21.2 0.3 1 23 507 529 507 529 0.98 13 14 0.00027 0.019 16.1 1.8 1 23 535 557 535 557 0.96 14 14 0.0011 0.074 14.2 0.6 1 21 563 583 563 584 0.95
Sequence Information
- Coding Sequence
- ATGCCAAGAACGCAGTCCGTGTGTCGAGTGTGTCTCGCGGACGATGTTATCCTGAACAATCACTGGGTTGAAAACAGCGAACTCTTAAATCTATACGAAAAACTGACAAACATCAAGTTCAATACCGATTTAAGAATGCCTATTACTATATGCACCATGTGTCAGTGGCGGCTGAAGGGCTTTGAAAAGTTTTCCAAGATGGCTGTGAAGTCAGAAAAAGCCCTATTGTTCCTTATAGACAGTGGCattaaaaagGTAACACCAGAGACCATCAAAGCTCTTAATGTACAAACAATGCAAATATTATCTACAACCCCTGCCCAGACCGTTTCATTCAATCAAGATTACATAAACAAATGCACCAGTTCGAATAGACAAGTCAAAAGCTATATTATGTACGACCAAACTCCAATATTTAAAACTGAGGTAAAAATTGAGACAAAATCTGAAGATGAGAGTGTTAAGAATGAGAAAAGCACAGATAGTGAGGAAAGCAATGATGCAAAACAGTCTATCAAAGTTAGTGATGGTACATCGGTCCGTTGTGATATATGCAGCAAAAATTTCACCTCAATACATCTTCTAAAGTCACATTTAATTAGTCACTCCAGAGTTAAACCATATAATTGTGAGCAATGTAATAAACTATTCTCTAGAAAGCACAATATGGTACAACACATGAAAACTTGCTGTAAGGACCTTCTTAAAAGTAAAGTATCTGATGCCGATGACAATATATATTTCTACTGTGAAGtgtgtaataaaaaatttacTTCTAAACCTCTTTTGAGATCACATAAAGTTATACATAGCAATGAAAAGCCGTTCAGCTGTGAGGGTTGCAAAAAATCCTTCGCCCGGAAGCAAGGTATGAAACAACATATGCTTATCTGCCCCGACGTGGAACCTAGCCCTCCAAGATACCCTTGCTCGTACTGCACTCGGGCATTCTCAACGGAAAGTGATCTAAGCGATCACATCAGAACACACTGCAAAGACAAGCCTTACACCTGTGAGAAATGCCACAAATCCTATACAACCAAACCGAACATGAAACAACACATGAAGATATGTTACTTAGAGAATGAACCGGTGAACTGTTCACTATGTCCACGGACATTTAACTCCAGGAGTGAGTTATGTAAGCATTTGAACATAGACCATACGGAGGATAAACCATTCTGCTGTGACCGATGCAGTACAAAGTTCTGGTATAAAAGCCATTTGAAGGTACATATGAGGATCCATACAGGAGAAAGACCTTTTGCTTGCGAGGTGTGTGGGAAGACATTTACACTACGGAACCATCTTAAAGCACACCTCGGTACTCATACAGGGGAGAAACCACATGCATGCCAGATCTGCGGCAAAGCGTTCCTTGCAAGGTTCAACCTAAGAGAGCATATGCGTTGTCATACAGGGGAAAGGCCATATCGTTGCAACTCATGTGGCAAATCCTTTGCTCACCAAAGCACATTGAGACAGCATCTCCGTAGAGTACACACGGAAGCCAAGCCCTACGCTTGCAATAAATGTTCTTTATCCTTCATTCAGGAGGCTAGTCTGACTTCTCATATGAGAGTCCACACATTACAAAGACCACATGCTTGCCACGTTTGTGATAAAGCTTTCTTCGAGGCCCGGTATCTGAAAGGTCATATGCAGGTGCACTCTGAAGTTAGGCCTCACAAGTGCTCGGCCTGTGGGAATGCCTACAAGCGGCCAGAGCATCTCAAACTACACATTAACTCTAAATGTAAGGCTTTTGGTGTGCATTCTTTTCAAGTGACTGCATGA
- Protein Sequence
- MPRTQSVCRVCLADDVILNNHWVENSELLNLYEKLTNIKFNTDLRMPITICTMCQWRLKGFEKFSKMAVKSEKALLFLIDSGIKKVTPETIKALNVQTMQILSTTPAQTVSFNQDYINKCTSSNRQVKSYIMYDQTPIFKTEVKIETKSEDESVKNEKSTDSEESNDAKQSIKVSDGTSVRCDICSKNFTSIHLLKSHLISHSRVKPYNCEQCNKLFSRKHNMVQHMKTCCKDLLKSKVSDADDNIYFYCEVCNKKFTSKPLLRSHKVIHSNEKPFSCEGCKKSFARKQGMKQHMLICPDVEPSPPRYPCSYCTRAFSTESDLSDHIRTHCKDKPYTCEKCHKSYTTKPNMKQHMKICYLENEPVNCSLCPRTFNSRSELCKHLNIDHTEDKPFCCDRCSTKFWYKSHLKVHMRIHTGERPFACEVCGKTFTLRNHLKAHLGTHTGEKPHACQICGKAFLARFNLREHMRCHTGERPYRCNSCGKSFAHQSTLRQHLRRVHTEAKPYACNKCSLSFIQEASLTSHMRVHTLQRPHACHVCDKAFFEARYLKGHMQVHSEVRPHKCSACGNAYKRPEHLKLHINSKCKAFGVHSFQVTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -