Basic Information

Insect: Cosmorhoe ocellata
Gene Symbol: ZIPIC
Assembly: GCA_963675405.1
Location: OY776273.1:5722640-5724355[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0028 0.19 12.9 0.0 1 23 144 166 144 166 0.98

2 15 2e-05 0.0014 19.7 0.7 2 23 171 192 170 192 0.96

3 15 8.6e-06 0.0006 20.8 2.2 1 23 198 220 198 220 0.97

4 15 0.00073 0.051 14.7 0.9 1 23 225 249 225 249 0.97

5 15 9.9e-07 6.9e-05 23.8 0.6 1 23 255 277 255 277 0.97

6 15 3.5e-05 0.0024 18.9 0.2 1 23 283 305 283 305 0.97

7 15 8.7e-05 0.006 17.7 1.5 1 23 311 333 311 333 0.98

8 15 0.00014 0.0097 17.0 0.1 1 23 339 361 339 361 0.97

9 15 0.0035 0.24 12.6 0.1 1 23 367 389 367 389 0.96

10 15 8.3e-05 0.0057 17.7 2.3 2 23 408 429 408 429 0.98

11 15 0.0002 0.014 16.5 1.2 1 23 435 457 435 457 0.98

12 15 1.8e-05 0.0013 19.8 0.2 2 23 464 485 464 485 0.97

13 15 1.2e-06 8.6e-05 23.5 1.0 1 23 490 513 490 513 0.97

14 15 8.5e-05 0.0059 17.7 0.9 1 23 519 541 519 541 0.97

15 15 0.0016 0.11 13.7 0.3 1 21 547 567 547 568 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0028	0.19	12.9	0.0	1	23	144	166	144	166	0.98
2	15	2e-05	0.0014	19.7	0.7	2	23	171	192	170	192	0.96
3	15	8.6e-06	0.0006	20.8	2.2	1	23	198	220	198	220	0.97
4	15	0.00073	0.051	14.7	0.9	1	23	225	249	225	249	0.97
5	15	9.9e-07	6.9e-05	23.8	0.6	1	23	255	277	255	277	0.97
6	15	3.5e-05	0.0024	18.9	0.2	1	23	283	305	283	305	0.97
7	15	8.7e-05	0.006	17.7	1.5	1	23	311	333	311	333	0.98
8	15	0.00014	0.0097	17.0	0.1	1	23	339	361	339	361	0.97
9	15	0.0035	0.24	12.6	0.1	1	23	367	389	367	389	0.96
10	15	8.3e-05	0.0057	17.7	2.3	2	23	408	429	408	429	0.98
11	15	0.0002	0.014	16.5	1.2	1	23	435	457	435	457	0.98
12	15	1.8e-05	0.0013	19.8	0.2	2	23	464	485	464	485	0.97
13	15	1.2e-06	8.6e-05	23.5	1.0	1	23	490	513	490	513	0.97
14	15	8.5e-05	0.0059	17.7	0.9	1	23	519	541	519	541	0.97
15	15	0.0016	0.11	13.7	0.3	1	21	547	567	547	568	0.95

Sequence Information

Coding Sequence: ATGTTCAGAGAGGTGCGGACGTTGTTGCAGCTGCAGTGCTGCGACGGACGGCCCAGCGCGCTGTGCTACGTGTGCCGCGCGCAGCTGGCGCGCTGCCGGCGTCTGGCCGAGCTGGCGCGCCGCTCCGACCGGCGCCTGCGCGAGCTGCTGCGCGCCGGCGGCACGGTGCGTGCCCCCCCCGCACCCCGcaccccgcccccgcccccgggCCCGCTACAGCGCGCGTGCTTGCAGGTGGAGGCGGCGctgggcgcgggcgcggcgcgcgcgctggccgTCACGGCGCTGGAGCCCGTGTCGTACGACGGCGCCGCGGACGAGCCGCCGCCCTCGCTGCTGCAGGTGTGCGTGAAGCAGGAGGGCGCCGACGACGCGCTCGCCAAGCAGGAGCCGTGCGACGTGAAGCAGGAGGAGGGCGCCGAGCCGCCATACGCCTGCGACGAGTGCGCGCTGCGCTTCCCGGCGCGGCGCCAGCTGCTGGCGCACCTGCGCGTGCACAACCACGACACGTACTGCAAGCAGTGCGACAAGCTCTTCTCCAACGCGAGCAGCCTCAAGGGCCACATGAGCATCCACACGGGCGAGAAGCCCTTCGCGTGCCACATCTGCAGCCGCACCTTCCGCAAGAAGCCCTACCTCGCGAGCCACATCCGCATGCACGAGGAGAAGCCCTACTGCTGCACGCTCGGCGACTGCACGGCGGCCTTCGCGCGCGCCGAGCACCTCGACAAGCACGTGCGCGTGCACGCGCGCGAGAACCCCTTCGCGTGCTCGCGCTGCGACAAGAGCTTCGCGTACAAGAGCGCGCTCACGCGGCACGCGCGCATCCACTCGGGCCTGAAGCCGTTCGCGTGCGGCGACTGCGCGATGACGTTCGCCGTGCAGAGCAGCCTCACCAAGCACCGGCGCGTGCACTCGGGCGCCAAGCCCTACGCCTGCGAGCGCTGCGCCGCCGCCTTCAACCACGCCGGCAACCTCAAGCGGCACATGCACACGCACGCCGACGAGCGGCCCTTCGCCTGCGAGCGCTGCGGCCGGCGCTTCCGCGAGCGCGAGGCGCTGGCCGAGCACGCGCGCGTGCACACGGGCGAGAAGCCGCACGCCTGCGCCGAGTGCGGCGTGCGCTTCGCCTTCGGCAGCACGCTGGCCGAGCACGAGCGCACGCACGCGcgcccgcccgcgcccgcgcccgcgccggcgccgcgcgcgcgcgtgCGGCCCACGTGCCAGGTGTGCCAGAAGCAGCTCACGTCCAACTCGCACCTCGTGATCCACATGCGCTCGCACACGGGCGAGCGGCCCTACCCGTGCACGCAGTGCTCGCAGACGTTCCGCACGAAGACGATCCTCAAGGGGCACATGCGCGTGCACACGGGCGAGAAGGTGGCGTCGTGCGAGATCTGCGGCATGGCCTTCACGCAGACGGGCAGCCTCGGCAAGCACATGCGCCTGCACACGGGCGAGCTGTACGCCTGCCACCTGTGCGGCAAGGGCTACAAGCAGAGCGGCCAGCTGACGGCGCACATCCGCAACTTCCACGAGGGCATCAAGCGCTTCTCGTGCGACATCTGCAGCGCGCGCTTCACGGCGCGCGGCCACCTGCGCAACCACATGAACGCGCACGCCGGCATCAAGCCCTACGCCTGCCCCAAGTGCAGCAACCGCTTCGCCACGCGCACCGTGCTGCGTCGCCACATCAAGAACTCCTGCAAGTAG
Protein Sequence: MFREVRTLLQLQCCDGRPSALCYVCRAQLARCRRLAELARRSDRRLRELLRAGGTVRAPPAPRTPPPPPGPLQRACLQVEAALGAGAARALAVTALEPVSYDGAADEPPPSLLQVCVKQEGADDALAKQEPCDVKQEEGAEPPYACDECALRFPARRQLLAHLRVHNHDTYCKQCDKLFSNASSLKGHMSIHTGEKPFACHICSRTFRKKPYLASHIRMHEEKPYCCTLGDCTAAFARAEHLDKHVRVHARENPFACSRCDKSFAYKSALTRHARIHSGLKPFACGDCAMTFAVQSSLTKHRRVHSGAKPYACERCAAAFNHAGNLKRHMHTHADERPFACERCGRRFREREALAEHARVHTGEKPHACAECGVRFAFGSTLAEHERTHARPPAPAPAPAPRARVRPTCQVCQKQLTSNSHLVIHMRSHTGERPYPCTQCSQTFRTKTILKGHMRVHTGEKVASCEICGMAFTQTGSLGKHMRLHTGELYACHLCGKGYKQSGQLTAHIRNFHEGIKRFSCDICSARFTARGHLRNHMNAHAGIKPYACPKCSNRFATRTVLRRHIKNSCK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -