Coce026212.1
Basic Information
- Insect
- Cosmorhoe ocellata
- Gene Symbol
- -
- Assembly
- GCA_963675405.1
- Location
- OY776273.1:5698479-5701153[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00021 0.014 16.5 1.6 1 23 158 181 158 181 0.96 2 13 3.9e-06 0.00027 21.9 2.2 2 23 201 222 200 222 0.96 3 13 6.3e-07 4.4e-05 24.4 5.2 1 23 229 251 229 251 0.97 4 13 6.4e-05 0.0044 18.1 1.3 3 23 258 278 257 278 0.96 5 13 3.5e-06 0.00024 22.0 0.1 1 23 284 306 284 306 0.98 6 13 1.1e-06 7.7e-05 23.6 1.0 1 23 312 334 312 334 0.98 7 13 0.00086 0.06 14.5 0.1 1 23 339 361 339 361 0.97 8 13 2.5e-07 1.8e-05 25.6 0.6 1 23 367 389 367 389 0.98 9 13 7.4e-05 0.0051 17.9 3.9 1 23 395 417 395 417 0.96 10 13 7.1e-08 4.9e-06 27.4 0.2 1 23 423 445 423 445 0.98 11 13 7.2e-06 0.0005 21.1 0.6 1 23 451 473 451 473 0.94 12 13 0.0011 0.076 14.2 0.7 1 23 479 501 479 501 0.98 13 13 2.3e-06 0.00016 22.6 0.7 2 23 510 532 510 532 0.96
Sequence Information
- Coding Sequence
- ATGTCCACTGTATGCAGGGTGTGCCTGAGCGGCGATCTCACGATTAGATACTTTCAGAACATTGAACTTCTGCAAATCTTCGAAAGGCTGACGACTATCAAGGTGAGCCCGgagcgcggcggcgcgggcatGTGCGTCCTGTGCTACTCAGTGCTGCTGCGGTGCCGCAAGTTTGCGGCGATGGCGCGCCGCGCCGACGGCATACTCACGGATCTAGTCAACAAGGGCTTGCAGGCAACCCCAGAAACCCTCTCGTTATTGAAAGTGTCCCCCGCCCCGAGCCTGTCCGTGAGCTGCGCCGAGGCCATGCACACCATCAACGTCGACTCGGAGGTGAAGCAAGAAGTGGCCGTCAAGCTAGAGGCGACCGACGACGACGACACCGACGCGGCCGAGGACATGCTGCCCGACGCCAAGCCCGTCAAAGTGGAAGTGTTCTTCACGTCCCACGAGGAGGAGCCCGACTCGAAGCACAACTGCGACATCTGCAGTAAGACGTACGACAGCACGTCCAAGCTGGTGGCGCACTACCGGCGCGCGCACGGCTGCAAGCCCGCCGGCGCCAGGAAGCGGAAGCCGCGGCTCAAGGACGGCCCGCTCACCTGCGAGGTGTGCGACAAGACGTTCACCTTCAAGTACAACTACGAGCGGCACAAGAGACTGCACGCGGCCGGCGCCAAGCCGCACCAGTGCGACGTCTGCCACAAGTCGTTCTCGCGCAACAGCAACCTGCGCCAGCACCGCCTCATCCACTCCGCGGAGAAGCCCTCCTGCGCCGAGTGCAACGTCACGTTCGCTTACAAGCGGCACCTGCGCGAGCACATGCGCGCGCACGCCGGCAAGCAGTCGTTCCCGTGCGCGCAGTGCGACAAGGTGTTCACGCGCAGCGCCTACCTCGAGGAGCACGGCAGGATGCACTCGGGCGAGAAGCCGTACGCGTGCGAGCAGTGCGACAAGGCGTTCTCGCACAAGAAGCTGCTGAAGGCGCACGCGCGCATCCACGGCGCCAAGGCGTACGCGTGCGCGCAGTGCGACAAGGCGTTCCCGCTGCGCATCCGCCTGGTGCGGCACATGAGCATGCACGCGGCCGAACGGCGCTTCACGTGCGACCGCTGCGCCAAGGCCTTCAGCACGGCCAGCAACCTGCAGCAGCACATGCTGACGCACACGGGCGAGCGCCCGCACGCCTGCGACCGCTGCCACAAGGCGTTCGCGCGCAAGCAGGAGCTCAAGATGCACTACCGCGTGCACACGGGCGAGAAGCCGTACGCGTGCGCCGACTGCGGCAAGGCCTTCTCGCAGAAGAGCACGCTCAACGTgcacagGCGCATCCACACGGGCGAGCGGCCGTTCGCGTGCGACATCTGCGGCAAGACGTTCGGCGACAAGTACACGTTCCGCAAGCACCTGGTGCTGCACTCGGGCGCGCGGCCCTACGTGTGCGCGCAGTGCGGCAACGCGTACGGCTCGCACAGCAGCCTCTACGTGCACCGGCGCAGccacgcgccgcccgcgccgcgcgccgccgtgTGCGCCGTCTGCGCCAAGGCCTTCTCCAACAACAGCCACCTCACGCGGCACGTGCGCACCGTGCACGCGCGCGAGGGCCCCGCGCACTGA
- Protein Sequence
- MSTVCRVCLSGDLTIRYFQNIELLQIFERLTTIKVSPERGGAGMCVLCYSVLLRCRKFAAMARRADGILTDLVNKGLQATPETLSLLKVSPAPSLSVSCAEAMHTINVDSEVKQEVAVKLEATDDDDTDAAEDMLPDAKPVKVEVFFTSHEEEPDSKHNCDICSKTYDSTSKLVAHYRRAHGCKPAGARKRKPRLKDGPLTCEVCDKTFTFKYNYERHKRLHAAGAKPHQCDVCHKSFSRNSNLRQHRLIHSAEKPSCAECNVTFAYKRHLREHMRAHAGKQSFPCAQCDKVFTRSAYLEEHGRMHSGEKPYACEQCDKAFSHKKLLKAHARIHGAKAYACAQCDKAFPLRIRLVRHMSMHAAERRFTCDRCAKAFSTASNLQQHMLTHTGERPHACDRCHKAFARKQELKMHYRVHTGEKPYACADCGKAFSQKSTLNVHRRIHTGERPFACDICGKTFGDKYTFRKHLVLHSGARPYVCAQCGNAYGSHSSLYVHRRSHAPPAPRAAVCAVCAKAFSNNSHLTRHVRTVHAREGPAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -