Basic Information

Insect: Cosmorhoe ocellata
Gene Symbol: -
Assembly: GCA_963675405.1
Location: OY776273.1:735791-740857[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0011 0.075 14.2 5.8 1 23 112 134 112 134 0.98

2 15 6.9e-07 4.8e-05 24.3 0.7 3 23 141 161 139 161 0.97

3 15 1.5e-06 0.0001 23.2 2.5 1 23 167 189 167 189 0.99

4 15 3.7e-05 0.0026 18.8 1.4 1 23 195 218 195 218 0.97

5 15 0.00028 0.019 16.1 4.7 1 23 228 250 228 250 0.96

6 15 2.8e-05 0.002 19.2 0.8 1 23 256 278 256 278 0.99

7 15 0.0003 0.02 16.0 0.9 3 23 286 306 285 306 0.97

8 15 8.8e-06 0.00061 20.8 0.7 1 23 312 334 312 334 0.95

9 15 4.8e-05 0.0033 18.5 5.7 1 21 340 360 340 362 0.94

10 15 0.00036 0.025 15.7 4.8 2 21 422 441 421 443 0.93

11 15 4.1e-08 2.9e-06 28.1 3.8 1 23 449 471 449 471 0.99

12 15 7.9e-07 5.5e-05 24.1 0.4 1 23 477 499 477 499 0.98

13 15 4e-07 2.8e-05 25.0 0.2 1 23 505 527 505 527 0.98

14 15 2.7e-08 1.9e-06 28.7 0.6 1 23 533 555 533 555 0.97

15 15 0.3 21 6.5 3.9 1 23 561 584 561 584 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0011	0.075	14.2	5.8	1	23	112	134	112	134	0.98
2	15	6.9e-07	4.8e-05	24.3	0.7	3	23	141	161	139	161	0.97
3	15	1.5e-06	0.0001	23.2	2.5	1	23	167	189	167	189	0.99
4	15	3.7e-05	0.0026	18.8	1.4	1	23	195	218	195	218	0.97
5	15	0.00028	0.019	16.1	4.7	1	23	228	250	228	250	0.96
6	15	2.8e-05	0.002	19.2	0.8	1	23	256	278	256	278	0.99
7	15	0.0003	0.02	16.0	0.9	3	23	286	306	285	306	0.97
8	15	8.8e-06	0.00061	20.8	0.7	1	23	312	334	312	334	0.95
9	15	4.8e-05	0.0033	18.5	5.7	1	21	340	360	340	362	0.94
10	15	0.00036	0.025	15.7	4.8	2	21	422	441	421	443	0.93
11	15	4.1e-08	2.9e-06	28.1	3.8	1	23	449	471	449	471	0.99
12	15	7.9e-07	5.5e-05	24.1	0.4	1	23	477	499	477	499	0.98
13	15	4e-07	2.8e-05	25.0	0.2	1	23	505	527	505	527	0.98
14	15	2.7e-08	1.9e-06	28.7	0.6	1	23	533	555	533	555	0.97
15	15	0.3	21	6.5	3.9	1	23	561	584	561	584	0.96

Sequence Information

Coding Sequence: ATGTCAGACTTATATTGGCTAAAAATCACACCGATATCACCAGATGCTGTCGCCGCCTTGCATGAAACCTTCAATTCACTGGGAGCCGTGGAAACTCCTTGGGATACAGAAGACAATCCAACGTTAAAGGAAGACCCAATTCATGATACGCTGGTTAAAGAAGAACATGATCCCGTGAAAGTTGAAGTCATAGCATTTGAAGAGTACTTCGACAATGATATCAAAGCTGAAGataCGAATGACGATAAACTCGCTAAAAAACTTCCAAGAAAATCTAAAAAACAAAcgacaaaagaaaaaaatcatgataaATCACAAGTCGATGATAAACCTTATTCCTGTGCCATATGTCACAAAAGCTATTTGCATAAAACTAACCTAAAATCTCATATAAAAAGACACGACATAAAAGCCATTGCATGTGACAAATGCAGCAAAATATTTCCAAATAAATACGAATTGAAAAGGCATTTGAGAACGCACACCGGCGATCGGCCATACTCTTGCAGTTATTGTCACAAAGCGTATTCCGATATCGGCAACTTAAGAAAACATCAAATGACTCATACAAGACTGAGTTCATACATCTGCAGCGAATGCAACGCCTCTTTCACACTACAGGGCAACTTGAGACGGCATTTTAAGAAATACCACACCGGAGAGAAGACAGATATAAAGTTACACGCGTGCGAAAGATGCGACAAGAGATTCCGCTACGAGCATCAGTTGGAAAGCCATTTAAAGTCTCATACCGGAGAGAAATCATATACTTGTACTGAGTGTCTTAAGACATTTGCGTTAGAAACGTATTTGAAAGCGCATATTAAAACCCATAGCGGAGAAAGATCGAGCGCCTGCGATAGATGCGGCAAAACTTTTCTCGATAAATACAGATTGAAGCGACATATGGCTTCTCATACCGGTGATAAGCCATTTGCATGTCATCTATGTGACAGAACATACGCAGACAGCGGTAATTTGAAGAAGCATTTGATAGATCATACCGGTGCCAAGTCGCATATATGCACGATATGCAACTCTTCGTTCACGCGAAAGAGTAGTTTGCAACGCCATATGAGATGTCACACCGATACATCTGTGAATACTGACGACAACCAATGTGAGCCTCAACAAGTATTAACTAGGTTACCAGAAAAACAAGAATCAAACgtgaaagaaaagaaaaatattgtaaacacCATACAATCGGGCATGCCATATGCTTGTaaacataaaaaaatacatatcgGAGAGAAACTATGCGCCTGCGACAGATGCGGAAAAACTTTTCCCAATGGTTATCAATTAAAAAGGCATATGAGATGTCACACGGGTGAAAAACCGTATTCTTGCGACCTGTGCCACAAAACATTCTCCGATAGAAGTAATCTTAAGAAACACATAATGACTCATTCTGGAGAGAAGTCATTTATTTGCACAGAGTGTAATGCTTCGTTCGCACTAAAGGGCAACTTACAACGGCATATGAGATCTCACACCGGTGAGATGCCATATTTCTGTGATATATGTCAGAAACCGTATCCTGACGCGAGTCTCTTGAAGAGACATATGAGAATTCATACAGGCGAAAAGCCATTTATATGTGATGTTTGTGGAAAAGCGTTCTCCGATAAAGATAATTTCAAAACTCATATGAGACTtcacactggacaaaagccatatagttgtaaaatatgtgattaCAAGAGCGCGCATGGGAACTGCTTGAAATTGCATTTAGCTAAAAAGCATAACTTGGGCACCTGA
Protein Sequence: MSDLYWLKITPISPDAVAALHETFNSLGAVETPWDTEDNPTLKEDPIHDTLVKEEHDPVKVEVIAFEEYFDNDIKAEDTNDDKLAKKLPRKSKKQTTKEKNHDKSQVDDKPYSCAICHKSYLHKTNLKSHIKRHDIKAIACDKCSKIFPNKYELKRHLRTHTGDRPYSCSYCHKAYSDIGNLRKHQMTHTRLSSYICSECNASFTLQGNLRRHFKKYHTGEKTDIKLHACERCDKRFRYEHQLESHLKSHTGEKSYTCTECLKTFALETYLKAHIKTHSGERSSACDRCGKTFLDKYRLKRHMASHTGDKPFACHLCDRTYADSGNLKKHLIDHTGAKSHICTICNSSFTRKSSLQRHMRCHTDTSVNTDDNQCEPQQVLTRLPEKQESNVKEKKNIVNTIQSGMPYACKHKKIHIGEKLCACDRCGKTFPNGYQLKRHMRCHTGEKPYSCDLCHKTFSDRSNLKKHIMTHSGEKSFICTECNASFALKGNLQRHMRSHTGEMPYFCDICQKPYPDASLLKRHMRIHTGEKPFICDVCGKAFSDKDNFKTHMRLHTGQKPYSCKICDYKSAHGNCLKLHLAKKHNLGT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -