Basic Information

Insect: Cosmorhoe ocellata
Gene Symbol: -
Assembly: GCA_963675405.1
Location: OY776269.1:5150552-5153532[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0015 0.1 13.8 1.0 1 23 215 237 215 237 0.98

2 16 2.6e-05 0.0018 19.3 0.7 1 23 243 266 243 266 0.93

3 16 0.92 64 5.0 1.4 3 23 275 295 274 295 0.94

4 16 7.9e-05 0.0054 17.8 1.3 1 23 303 325 303 325 0.96

5 16 7.7e-05 0.0054 17.8 2.9 1 23 333 355 333 355 0.97

6 16 1.3e-07 8.7e-06 26.6 2.4 1 23 361 383 361 383 0.99

7 16 0.00034 0.023 15.8 2.5 3 23 391 411 389 411 0.98

8 16 7.3e-06 0.0005 21.1 1.5 1 23 417 439 417 439 0.98

9 16 0.00037 0.026 15.7 2.0 1 23 445 467 445 467 0.97

10 16 1.7e-06 0.00012 23.0 0.2 1 23 473 495 473 495 0.97

11 16 1.8e-06 0.00013 22.9 6.6 1 23 501 523 501 523 0.98

12 16 7.5e-08 5.2e-06 27.3 0.6 1 23 529 551 529 551 0.99

13 16 1.6e-05 0.0011 20.0 0.7 1 23 557 579 557 579 0.97

14 16 1.4e-06 0.0001 23.3 0.5 1 23 585 608 585 608 0.96

15 16 7.1e-06 0.00049 21.1 0.8 1 23 614 636 614 636 0.98

16 16 0.00013 0.0093 17.1 5.2 1 23 642 664 642 664 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0015	0.1	13.8	1.0	1	23	215	237	215	237	0.98
2	16	2.6e-05	0.0018	19.3	0.7	1	23	243	266	243	266	0.93
3	16	0.92	64	5.0	1.4	3	23	275	295	274	295	0.94
4	16	7.9e-05	0.0054	17.8	1.3	1	23	303	325	303	325	0.96
5	16	7.7e-05	0.0054	17.8	2.9	1	23	333	355	333	355	0.97
6	16	1.3e-07	8.7e-06	26.6	2.4	1	23	361	383	361	383	0.99
7	16	0.00034	0.023	15.8	2.5	3	23	391	411	389	411	0.98
8	16	7.3e-06	0.0005	21.1	1.5	1	23	417	439	417	439	0.98
9	16	0.00037	0.026	15.7	2.0	1	23	445	467	445	467	0.97
10	16	1.7e-06	0.00012	23.0	0.2	1	23	473	495	473	495	0.97
11	16	1.8e-06	0.00013	22.9	6.6	1	23	501	523	501	523	0.98
12	16	7.5e-08	5.2e-06	27.3	0.6	1	23	529	551	529	551	0.99
13	16	1.6e-05	0.0011	20.0	0.7	1	23	557	579	557	579	0.97
14	16	1.4e-06	0.0001	23.3	0.5	1	23	585	608	585	608	0.96
15	16	7.1e-06	0.00049	21.1	0.8	1	23	614	636	614	636	0.98
16	16	0.00013	0.0093	17.1	5.2	1	23	642	664	642	664	0.98

Sequence Information

Coding Sequence: ATGGCCAGAGTAGATTTATGTCGAGTTTGTCTTATCGGCAACATCAGGATGTATTCAATGCGAAACACAAAACTTGAAGAAACATTTGAATTATTTGCAGGCACCAAATTTAGTACAGAAGATGGCAGACCTAAAACGATATGCTACATTTGTTACGCTCAGTTGAAAAGGTGCTGTAAATTCAGAGACATGACCCATACTTCAGAATGTCTTCTGAAAGAGTTCTTCGAAAATGGCTATGAGCTGACTCAAGAAACTTCAAGCATGCTGTACTCTAATAAACCTCACAACTTAACATTAACCTCCGTCCAGCACACATCCTCACATGATCATGATGTTGCCGAAGCTGTGAAAGAGGAACAGTCTGATTCCATTGACCATTTTGTCTATTTTGATAACAGTTCCGGAACAAGTGTTAAAGATGAAGTTATCCCCTCATCTAAAAAGCACTTACTTGACACTAAAGTTACTACAACATTAATTAGAATTGATCTAATGGATGTCAAAACAGAAAACAGCGAAACCCATCTGAAAAATGAAGTCTCAACCCAAAAACGTACTGAACAAACTGCTCATAAAAATAACCCATATGAAATTAAGAAACAAGAAACGCCTACCTCTGATACATGTGcagatttaaattatatttgtccATTATGCAACAAAAAACATGTTACAGAAAAGGCTTTGAATCAACACATGAAAGTACATGATCAAAGTAGAGTCTTTGTATGTGAAATATGCGAATACCGGTTCAACACTAAAGCAAACTTAAAAACGCACAAGGAAAACATACATAGAACGGAAAGTGAAACAGTTGCTTGCACCGTCTGCCATAAACTAATGAACAGTGCTCAAATATTAAAACGGCACATGAAAATCCATTCCGATAAACCTGCTAGAACTCATGCATGTGATTTGTGCGACTTAAAGTTTTCTGACAGGAGTACTCTAGTGAGACACAAGGCGACACACACGGACGTGTCAACAAAACCACACTCCTGTTCAGTATGTGACAAGAAATTCTCTGTTATATATTATCTGAAGAGTCACATGAAGCTTCATACTGGGGAAAAGCCGTATTCGTGCGAGAGATGCGGTAAAGCGTTCACTCTAAACAGCCATTTGAAGATTCATATGCGGACCCACACAGGTGAGAAACCGTATGGTTGCAGCAAATGCGATAAGCGATACTCGAGCCTCGCTCACGTAAAGTATCACATGAAAATGCACACAGGAGAGAAAGGATATTCCTGCGATATATGCCAAAAAGCCTTCTCCGAAAGCAGTCATTGGAAAAGTCACTTAAAAATACACTCAGGCGACAAACCGTTCGCGTGTGACATGtgtgaaaaaaaattcataggTCACACCAATCTGAAACTGCATAAGCGAGTTCACACGGGCGTGAAACCGCACATTTGTGACATTTGCGGTAAAGCTTTCGCGCAAAAGTCAGTTTTGATAATCCATGTCAGAACTCACACTGGCGAAAAACCGTTCGCATGTCACAGGTGTGGCAAAACATTTACCATGTCGACACATCTGAGAACTCACATGAGAACTCATACAGGCGAGAAACCGTATTCGTGCGAGATTTGCGGCAAAACTTTTGCCGAGAATGCCCGCCTAAAGCGTCATATGAGAACTCATACCGGCGAGAAACCGTACGCCTGTACCATGTGCGATAAATCGTTCGCTGATTACACAAACATGAAGACTCATCTAGTCACGCATACAGGCGAGAAGCCATACGCTTGCGATCGGTGCGGTAAAACCTTTACCCAACAAGGTACGATGAAAAAGCACATACAAATAGTTCATCTTAAAGAGAGGCCTTACTTCTGTGATATGTGTCCTAAGACCTATGCTAAGAGGCAAGCTCTGAAAGTCCACATGCGGTCACATACTGGAGAAAGACCGTTTAATTGTGAGAAATGTAATAAGACATTTACGAGACACGAAATCTTAAAGCGGCATTTGAAGACTCACGCAGATGAAAATGGCTATGCTTTAAAAGATATAACAAAGTAG
Protein Sequence: MARVDLCRVCLIGNIRMYSMRNTKLEETFELFAGTKFSTEDGRPKTICYICYAQLKRCCKFRDMTHTSECLLKEFFENGYELTQETSSMLYSNKPHNLTLTSVQHTSSHDHDVAEAVKEEQSDSIDHFVYFDNSSGTSVKDEVIPSSKKHLLDTKVTTTLIRIDLMDVKTENSETHLKNEVSTQKRTEQTAHKNNPYEIKKQETPTSDTCADLNYICPLCNKKHVTEKALNQHMKVHDQSRVFVCEICEYRFNTKANLKTHKENIHRTESETVACTVCHKLMNSAQILKRHMKIHSDKPARTHACDLCDLKFSDRSTLVRHKATHTDVSTKPHSCSVCDKKFSVIYYLKSHMKLHTGEKPYSCERCGKAFTLNSHLKIHMRTHTGEKPYGCSKCDKRYSSLAHVKYHMKMHTGEKGYSCDICQKAFSESSHWKSHLKIHSGDKPFACDMCEKKFIGHTNLKLHKRVHTGVKPHICDICGKAFAQKSVLIIHVRTHTGEKPFACHRCGKTFTMSTHLRTHMRTHTGEKPYSCEICGKTFAENARLKRHMRTHTGEKPYACTMCDKSFADYTNMKTHLVTHTGEKPYACDRCGKTFTQQGTMKKHIQIVHLKERPYFCDMCPKTYAKRQALKVHMRSHTGERPFNCEKCNKTFTRHEILKRHLKTHADENGYALKDITK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00361833;
90% Identity: -
80% Identity: -