Coce026220.1
Basic Information
- Insect
- Cosmorhoe ocellata
- Gene Symbol
- -
- Assembly
- GCA_963675405.1
- Location
- OY776273.1:5710966-5712612[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 2.4e-05 0.0017 19.4 0.5 1 23 76 98 76 98 0.96 2 17 1.6 1.1e+02 4.2 0.1 7 23 101 117 101 117 0.92 3 17 0.00018 0.013 16.7 1.8 1 23 123 145 123 145 0.96 4 17 0.00024 0.017 16.3 0.4 1 23 151 173 151 173 0.95 5 17 3.3e-05 0.0023 19.0 1.5 1 23 179 201 179 201 0.96 6 17 7.9e-06 0.00055 20.9 0.8 1 23 207 229 207 229 0.98 7 17 3.3e-07 2.3e-05 25.3 0.4 1 23 235 257 235 257 0.98 8 17 9e-07 6.2e-05 23.9 0.6 1 23 263 285 263 285 0.98 9 17 4.6e-05 0.0032 18.5 0.1 1 23 291 313 291 313 0.97 10 17 6.3e-06 0.00044 21.3 0.7 1 23 319 341 319 341 0.99 11 17 2.2e-06 0.00015 22.7 0.9 1 23 347 369 347 369 0.99 12 17 8.1e-05 0.0056 17.8 0.0 1 23 375 397 375 397 0.96 13 17 0.0022 0.15 13.2 3.7 3 23 405 425 403 425 0.91 14 17 3.7e-05 0.0026 18.8 2.0 1 23 431 453 431 453 0.97 15 17 2.5e-05 0.0017 19.4 0.5 1 23 458 480 458 480 0.97 16 17 0.00075 0.052 14.7 0.9 3 23 488 508 486 508 0.94 17 17 4.7e-06 0.00033 21.6 4.2 1 23 514 536 514 536 0.96
Sequence Information
- Coding Sequence
- ATGGTCAAGGaagaaaaagtaattttaaaactagaaCAAATATCCGGTAGTGACGATATCGACGATGACGAGCTCCCGTCGGCCGGCGAGGTCAACGTTTCGAATGTTACAGAAACATCGAAAAAGAACGATGCTGTGAAAACGAATATCGACAACGTGCACTCGTCAACGGCGAAGAAACACCAACCGAAGAGACGCGTGGAGCGGCACGCGGGCGCGCCGCCGTACCGCTGCGACACGTGCGACAAGGCCTACGCGCACAAGGGCACCCTCGCCAGGCACGTGCTGGGCCACTCCGCGGACAAGGCCTACGCGCACAAGGGCACCCTCGCCAGGCACGTGCTGGGCCACTCCGCGGACAAGCGGCACGCGTGCGGCACCTGCGGCAAGGCGTTCCACTTCAAGGACGCGCTGAGCAAGCACGCGCGCGTGCACTCGGGCGCGCGGCCCCACGCCTGCGCGCGCTGCCCCCGCGCCTACAGCCAGCGCGGGGACCTCACGCGCCACGAGCGCGCGCACGCCGGGGCCAAGCCGCACGCCTGCGACCGCTGCCGCAAGACCTTCTCCGAGCCGTACCTGCTCGCCAAGCACGTGCGCACGCACACCGGGGAGAAGCCGTACGCCTGCGCGCGGTGCGCGCGGGCCTTCACCCAGCGCAGCAACATGCTCAAGCACATGCGCACGCACACCGGCGAGAAGCCCTACTCTTGTCCCACGTGCGGCAAGACTTTCGCCCAGAGATCCATCCTGACGAACCACATGCGGATCCACACCGGGGAGAGGCCGTACTCCTGTCCCACGTGCGACAAATCTTTCGCATCGCAGAGCGTTCTGTCGAGACACACGCTGACCCACACCGGCGCCAAGCCGTACGCCTGTAACATGTGCGATAAGGCGTTCACCGAGAGACGGGGCCTGATCATCCACGTGCGCGCGCACACCGGGGAGCGGCCCTACTCGTGCAGCGTGTGCGGGAAGGCGTTCGGCAACATGCGGCACCTGAGCGCGCACGCGAGGACGCACACCGGGGAGAAGCCCTACTCGTGCGGCCGCTGCTCGGAGCGGTTCAGCAACAACAGCAGCCTGGCGCGGCACGTGCGCACCCACACCGGGGAGCGGCCCTACGCCTGCGCGCGCTGCGGCAAGGCCTTCGCGCAGCGCGGCGTGCTGGCGCGGCACATGCTGGCGCACACGGGGGAGAAGGCGCACGCCTGCATCGTGTGCCACAAGAAGTTTACCTACGACAAAAGTCTGAGGGTCCACATGCGAGTGCACACCGGCGAGCGGCCGCACTCCTGCAAGATGTGCGATAAAGTATTCTCCGATGAGAAGAGTTGGAGAATGCACGTGCAGACTCACCCCGGAGAGTCCCATCGCTGCAACACGTGCCCCGAGACATTCGATGATGCTGAGAGTCTGAGAAGCCACGTGCGAGCTCACAGCGCCGTGCAGCCGTCCAGCTGCGCCGCGTGCCACAAGGGGTTCAGCAGCGCGCGCAGCCTGACGAGCCACGCGCGCGTGCACGCCGGCGTGCGGGCCCACGCCTGCCCGCGCTGCCAGAAGACGTTCACCATGCAGAGCCACTTGACCAGCCACATGCAGATCCACAGCGCAGGCGGAGCGAGGCTGACCGGTTCAGATGATTGA
- Protein Sequence
- MVKEEKVILKLEQISGSDDIDDDELPSAGEVNVSNVTETSKKNDAVKTNIDNVHSSTAKKHQPKRRVERHAGAPPYRCDTCDKAYAHKGTLARHVLGHSADKAYAHKGTLARHVLGHSADKRHACGTCGKAFHFKDALSKHARVHSGARPHACARCPRAYSQRGDLTRHERAHAGAKPHACDRCRKTFSEPYLLAKHVRTHTGEKPYACARCARAFTQRSNMLKHMRTHTGEKPYSCPTCGKTFAQRSILTNHMRIHTGERPYSCPTCDKSFASQSVLSRHTLTHTGAKPYACNMCDKAFTERRGLIIHVRAHTGERPYSCSVCGKAFGNMRHLSAHARTHTGEKPYSCGRCSERFSNNSSLARHVRTHTGERPYACARCGKAFAQRGVLARHMLAHTGEKAHACIVCHKKFTYDKSLRVHMRVHTGERPHSCKMCDKVFSDEKSWRMHVQTHPGESHRCNTCPETFDDAESLRSHVRAHSAVQPSSCAACHKGFSSARSLTSHARVHAGVRAHACPRCQKTFTMQSHLTSHMQIHSAGGARLTGSDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -