Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.014 19 6.0 0.4 14 27 33 46 25 57 0.77

2 8 0.0045 6 7.7 0.0 14 44 84 111 71 111 0.87

3 8 0.061 82 4.0 1.0 18 39 133 151 125 154 0.79

4 8 0.057 77 4.1 0.2 6 34 176 201 172 214 0.79

5 8 0.83 1.1e+03 0.4 0.2 9 26 229 253 222 256 0.69

6 8 0.0045 6 7.7 0.9 2 27 258 283 257 291 0.86

7 8 0.0004 0.54 11.0 2.8 4 41 289 322 286 328 0.83

8 8 0.00048 0.65 10.8 1.2 19 44 331 353 324 353 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.014	19	6.0	0.4	14	27	33	46	25	57	0.77
2	8	0.0045	6	7.7	0.0	14	44	84	111	71	111	0.87
3	8	0.061	82	4.0	1.0	18	39	133	151	125	154	0.79
4	8	0.057	77	4.1	0.2	6	34	176	201	172	214	0.79
5	8	0.83	1.1e+03	0.4	0.2	9	26	229	253	222	256	0.69
6	8	0.0045	6	7.7	0.9	2	27	258	283	257	291	0.86
7	8	0.0004	0.54	11.0	2.8	4	41	289	322	286	328	0.83
8	8	0.00048	0.65	10.8	1.2	19	44	331	353	324	353	0.95

Coding Sequence: ATGCAGAATAATAAGCATTACATTGCAATCAAAGCCAGAAAACAACGCGTTTTAATACTTTTAGAATGTTCCCGAATTTGCCCCTTTAAATggaaaaaacataattttatttgcatatACTGTAATAAGGGATACGCAGATCCAGCTAGGTTAAGAGAACACAATACTGAACACAAGGATATCAAAcgtaaagatattataaaagctATCGCTAAAGTCAACAGTACAACGGAATTATTAAAAGCAGATATCACAGATGTCAGCTGTAAACTTTGTGATGCTACAATAACTGGATTAGATGATCTTATAACACATTTATTTGAAAAGCACAAAAAGAAAATAGAGCTAGCTTCGAATGTAGGAATCATTCCCTTCAAAGTGACGCTAGACGAATACAGATGCACGAtttgtgataaaaaatatacagaatACATGAAGCTTAAACATCATATGAACATTCATTTTCCGAATTTTATTTGCGAGCAGTGTGGATCTGGCTTCGTTACCGCAGGAAGATTGAAGGTCCATGCTTTATCACATGAAACCGGAAGTGTGCCTTGCGAAGTTTGCGACAAAGTGTTCCGATCTAACAATTCAAAAAAACTGCATTACGAAAGCGTACATATGAAGCTCAGAAGAAACAGTTGCCCGCAATGTCCTGAAACATTTTTGCACTACTATCAAAAACTAAAGCACCTATCCTCAATCCACGGCATgaaagtgaaagagtttaacTGCGATTTATGCTCAAAAGTGTTTATAACTAGAGGTAAACTTTACGCCCATGTCCGCGGCACACATTTGAAGGAAAAAAGATACACGTGCATTGTCTGTGACGCTAAGTTCTTTACGTcgactttattgaaaaaccaTGCGCTCTCGCATGACGGGGAAAGGAAATATAAGTGTGGGCTCTGTCAGAAAGCATTTAAGAGGAAGCCAACATTGAGAACGCATATGAGAACTCATTCAAATATCAGGTGCTACGCTTGCAATGTGTGTGGTAACACATTTGCGCAGAAAAATGCACTTAATCACCATGTGAGAACACAACATCCGAATCCAATTGATCAATACGActga
Protein Sequence: MQNNKHYIAIKARKQRVLILLECSRICPFKWKKHNFICIYCNKGYADPARLREHNTEHKDIKRKDIIKAIAKVNSTTELLKADITDVSCKLCDATITGLDDLITHLFEKHKKKIELASNVGIIPFKVTLDEYRCTICDKKYTEYMKLKHHMNIHFPNFICEQCGSGFVTAGRLKVHALSHETGSVPCEVCDKVFRSNNSKKLHYESVHMKLRRNSCPQCPETFLHYYQKLKHLSSIHGMKVKEFNCDLCSKVFITRGKLYAHVRGTHLKEKRYTCIVCDAKFFTSTLLKNHALSHDGERKYKCGLCQKAFKRKPTLRTHMRTHSNIRCYACNVCGNTFAQKNALNHHVRTQHPNPIDQYD

Sequence clustering based on sequence similarity using MMseqs2