Coce010863.1
Basic Information
- Insect
- Cosmorhoe ocellata
- Gene Symbol
- cheC
- Assembly
- GCA_963675405.1
- Location
- OY776253.1:8896292-8904246[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2e-10 1.8e-07 31.5 0.0 1 37 50 86 50 90 0.89 2 2 6.1e-08 5.5e-05 23.5 0.0 4 37 416 450 415 454 0.91
Sequence Information
- Coding Sequence
- ATGTCTTCGAGAGGGCAACGCGTTATATTTCTTTCTGGGTATAGATTCTGCAAAAACAAAGTGAATGGAGAGAAGATTTATTGGCAATGTTCAACGCATAAACACAGAGATTATGAACTGAATCCTGAAAAGGGGTATAAGAGATCTGACCCAGATGCTGTAAAACGTGCTCTAGACTACATTGCTGCGAACAAGGTTTCTCTCCGACATGCATCCAAACTCTTTAATATACCTCATACCACACTCGGACGTAGAGCAAAAAATCCAGATGGAAAATCAACACTTGGCTGCCCACGTGATCTAACAGATCAGGAAGAAAAATCTCTTTGCGAATTCATATTGGATATGTCTAAACGAGGGTTTCCGAATAAAAGTTCCAACGTACAAACTTCTGCACAAGAACAACTCATTGAACAACCTAGAAAAAACCGTTTTACAAATAATCGTCCCGGTAAATGCTGGTACCAGTATTTTCAACTAAGGCGCTTCGGTAAAGTGATCAAAGATGATGACTTACCTAACAAAGATATAGCGGCATGGTTCAAACAGATGGAAAACAATATTGCTCATTACGACCTTTCAGACGCTATAGCTGATCCTAAAAGAGTATTTCTAGCCGAAGAAACTTCTTTCAGTATTCACGAAAATAATggcaaaatatgtttttaccAACAAAATAGCGCAGCTGCAAAAGTTTGCGAGAAACTAACGGTAATGATGTACTTTTCTGCCAAAGGTCAAAGTTGTAAACCGATGATTGTGTATCCGTACGAAAAAATACCTGTCAAAATCCTTGAAAGTGTGCCGAATAATTGGGTCTACGGAGCCAATGTGGATGGTGACATGACTCCGAAACTATTTCTCGATTACATCACCAAAGATTTTTATCCCAAGCTTAAAGAAGAAAGGGTCAAATTCCccatcattttatttgtagatGGGTTCAAATTGTCTGTGACGTTGAAGGTCCTTGATGTATGCAAAAGTTTACAGATACAGTTATTTGCGATGTATAATTACACTGAGGTATTGCCCTTAGATGACGCTGATCTGATCGAACCTTTGAAAACAGCATGGAAAAAAGGAGTGAAAGAATATTACAAGAAAAATGGGAAGGAACCGACTGCTAATAAATTGACTATTGCTCCTTTTCTTAAATATCTGGTCGATTCACATATGAATAAGAAAGATATTGTAAAAGGTTTTCAAGTTTCTGtcacaaaaaagctaaaatactCAAAAGTGGATCTTGCACGTGCCTTAGACTTTGTTTCCAACAAAAAGGGTTCTATACGGAAGGCATCGAAACTTTTTAAGGTCCCAAGAACTAGTCTCAATTATAAATTGAAGAACCCTAACTCGAAGATTGGCACGGGTCAAACGCCTTACCTACCAGAAACCGTAGAAACTGATATAGTACAGTATATAATAGAGCTATCCAACCGTGGTTTCCCCCAAAAGAAAGAAGATATCAAAACTTGCGTTCAAGATTACTTGAAAATCCAACGTCCTATCCCAAACAACCCATTCAACAATAATCGCCCTGGAGATGGCTGGTACTTTAAATTTCTGCAACGCCACCGCAATGAACTTAAAAAAGTTAAGGATTTCGAAAACTGTGACTCTGATGAAGAAACCGAAAtatggtttaaaaaaattggtgATCACATCCTGCTGGAGAACCTTTCTAATGTTATTGAAGATCCAAACAGAGTTTTTATGGCAGAAGAGACAATCTTCGACATATCTGAATTCGGAAGTGTTTTTATTCAAGGTGGTAGCAATGCAAATACTGAAATGGTCAAAGAGAAGATTACCGTTTTCTTCTCGTTCGCCGCAAATGGTTCATATTGCAACCCAATGATTGTGTATCCGTGTAAAAAAGTCCCTGATAAAATTGCTGATAGCATACCACTTAGTTGGGGCTTTGGCAGAAATGAAACTGGTCGAATGACGTCTCAATTACTGTACGAGTtcatcaaaaatgttttcgtaGCAAAGTTGAGAGAAGTTGAGATCGACTTTCCTgtgattttgtttgtggatGGTTATAAAACTCATGTCACCATGAAAGTGTATGAATTGTGCAAGAGATTGCAGATTCATTTGATTGCAATCTACAGGAATTATACTAAAACGTTGTCGCCTTCTGATTTAGCGCGTCTTTGTCCTTTGAAGACAGCCTGGATGACAGGAATGAGGCAGTGGTATGCGAAAAAGGAATATAAAGCCGCAGTGAATAAATTGACCTTCGCTCCATTCTTGCAAAGCTTTATTGTGTCGCATATTAATGTTGTGGATCTGAATCAGGGTTTTAAAGCATCTGGCTTGCATCCGTTCGACTTCGGCAGTATCACTGACAACGACATATCTCTAACTGATGCTCAAAGTACTGCTAGCGACGGTGATACTAAAAAAGACCGTTATCTTTATATTAATTCTGACTAA
- Protein Sequence
- MSSRGQRVIFLSGYRFCKNKVNGEKIYWQCSTHKHRDYELNPEKGYKRSDPDAVKRALDYIAANKVSLRHASKLFNIPHTTLGRRAKNPDGKSTLGCPRDLTDQEEKSLCEFILDMSKRGFPNKSSNVQTSAQEQLIEQPRKNRFTNNRPGKCWYQYFQLRRFGKVIKDDDLPNKDIAAWFKQMENNIAHYDLSDAIADPKRVFLAEETSFSIHENNGKICFYQQNSAAAKVCEKLTVMMYFSAKGQSCKPMIVYPYEKIPVKILESVPNNWVYGANVDGDMTPKLFLDYITKDFYPKLKEERVKFPIILFVDGFKLSVTLKVLDVCKSLQIQLFAMYNYTEVLPLDDADLIEPLKTAWKKGVKEYYKKNGKEPTANKLTIAPFLKYLVDSHMNKKDIVKGFQVSVTKKLKYSKVDLARALDFVSNKKGSIRKASKLFKVPRTSLNYKLKNPNSKIGTGQTPYLPETVETDIVQYIIELSNRGFPQKKEDIKTCVQDYLKIQRPIPNNPFNNNRPGDGWYFKFLQRHRNELKKVKDFENCDSDEETEIWFKKIGDHILLENLSNVIEDPNRVFMAEETIFDISEFGSVFIQGGSNANTEMVKEKITVFFSFAANGSYCNPMIVYPCKKVPDKIADSIPLSWGFGRNETGRMTSQLLYEFIKNVFVAKLREVEIDFPVILFVDGYKTHVTMKVYELCKRLQIHLIAIYRNYTKTLSPSDLARLCPLKTAWMTGMRQWYAKKEYKAAVNKLTFAPFLQSFIVSHINVVDLNQGFKASGLHPFDFGSITDNDISLTDAQSTASDGDTKKDRYLYINSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -