Csor019925.1
Basic Information
- Insect
- Cosmopolites sordidus
- Gene Symbol
- stc_1
- Assembly
- GCA_031761425.1
- Location
- JARFXV010000554.1:1240195-1249708[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.8 4.8e+04 -4.0 1.6 15 19 311 315 310 315 0.81 2 13 0.26 6.7e+03 -1.3 0.2 4 10 344 350 343 350 0.93 3 13 2.5e-06 0.066 14.7 13.4 4 18 359 373 357 374 0.93 4 13 1.1e-07 0.003 19.0 7.8 1 19 410 428 410 428 0.96 5 13 1.6 4.3e+04 -3.8 0.4 6 10 458 462 458 463 0.89 6 13 4.1e-09 0.00011 23.7 12.1 1 18 468 485 468 486 0.97 7 13 5.6e-06 0.14 13.6 20.5 1 19 526 543 526 543 0.98 8 13 2 5.2e+04 -5.2 2.0 6 10 573 577 573 577 0.95 9 13 0.002 51 5.5 9.6 1 11 583 593 583 594 0.96 10 13 2.1e-10 5.4e-06 27.8 12.9 1 18 610 627 610 628 0.97 11 13 0.0048 1.3e+02 4.2 15.4 1 18 667 683 667 684 0.87 12 13 0.00038 9.8 7.8 22.0 1 18 720 738 720 743 0.94 13 13 0.0022 59 5.3 16.0 1 18 749 767 749 768 0.89
Sequence Information
- Coding Sequence
- atgtcTCAGTTTAATAATTCTAACAGGGAAGAATCTTCAAGTCAATGTCCTTCAGTAGTTTCAAATCTACAACCAACAGCACCcgaatattttccattaaataACTCTAATAATGGTGcaataaagaaaacttttacaaggcaaaatagaaattttaataaaacaaaagcaCTTAAATCTCGATCAGATGGTGAAAAATTTAAACAGTCAGAACATGCAAGCAATACATTTTATACTAGTGTGAACAgttctgttaaaaaatcacatgATAAGAAATACAGAAATGAGAGAAACTCATATTACAAGTACAATAATGACCACTATGAAAATAGAGATTATCATAGCAACATTGATAAATTTGAGGGTGACGATACTAATTATGAATTGGCTGAAGATAATTCCTcctattataataataaagatGCATATGGAAGTAGATTTGATAAGAAAGATAGATACAATTCATCATATCCTAGACATGATAGAACAAATCAAAATCAATCAAGaactaataattattatagGGAAAACCCAAATTATAGCAAGAGGTTTACCTCATCTAGAAGTGAAAATAATCATCAGTATTATTCTCGGAAGAAACCAAATGATTTTCATCAGTatagtaacaaaaataaacagagAATGGGAAAGCAATTAACATTGCCAGTAATCAGTAAAGATGGTATTTATTTGATACATTATATGTATTCTAACTTTActaaaaagaatgttttcttCGTAGCCAATGTAGCAGGACAGAGGGAGCGGTTAATTGATATGATTGACCGCTATGCATTAGAATGTTTAGTGTGCTGTGATAAAATAAGAAACACTGAAAAAATTTGGTCATGTTTGCAATGTTACCATATTcttcatttaaattgtattattaCTTGGGCAAAATCGTCAAAGgTTGAAGAAAATTGGCGTTGCCCAGCTTGTCAGAATTTATATACAGAGTTACCAAGCGAATATAGATGTTATTGTGGCAAAATGATTAATCCAAAATTTGATCCAAACATTATAGCTCATGCTTGCGGAGATGTGTGTTTAAAGAAAGGCAAAAACTGTGATCACAAGTGTAATATCTTGTGCCATCCAGGTCCTTGTCCAGAGTGTAATGTGATGGTTTCTAAACCTTGTGGTTGTGGCGCGACTGAACAGGTTGTTAAATGTAGTTCCGAATTTAAATTTGTCTGTGAAGCCTACTgtaataaattgttaaattgtgGAATTCATACCTGTGCAGAGAAATGCCATACAGATGATTGTAAATTTTGTAAGCAGGTTTTAATCCAGGAATGCTATTGTGGTAAAACTGGTAGAAAGGTGACTTGTAATGCCGAACACCAAGGAAAAGTACATTTTATCTGTGAAAATACATGTGGAAAATTGTTATCATGCTCTAATCATAACTGTGAGAAACTGTGCCATTCAGGACCTTGCAGTTCATGTGAAAGAGATGTAGATTTGGTTAAATTTTGTTGTTGTGGTGAAACACCTCTCAAAGAGGAGAGGAAATCTTGTTTAGATCCCATTCCATGTTGTGATAAGATATGTAAtaagtttttgaaatgtggtcatCATTGCAAAGAAAAATGTCATGAAGGGAAATGTCCAACTTGTCCCTTAACAACAGTAATTCGTTGCCGTTgtggaaatttaaataaagaagttaCATGTGATGAATTGATTAACACCTCTGGGGATATATTGTGTGAGAAAAAATGCAATAAGAAACGCCTCTGTGGTAAACATAAGTGTAATCAGAAATGTTGTATTGAAGTGGAACATATTTGTTTGTTGCCTTGCAATCGTTTGCTAACTTGTGGACTTCATAGGTGTGAAAGAACTTGCCATTCGGGCCGATGCCCGCCTTGTTTAGAGACCAGTTTCGAAGAGCTGTTCTGCGAATGCGGTTCTGCCGTATTGTATCCACCCATTCCGTGTGGAACAAAACCGCCAGTTTGTATCAAACCCTGTTCAAAATCAAGGCCTTGTGGTCATCCTCCTAATCACGAATGTCACACTGGACCATGCCCTCCTTGCTTTGTATTAACCAAAAAATGGTgctatggaaaacatGAAGAGCGCTCAACTATTCCTTGTAATCAGGAATATTTTAGTTGTGGTTTACCATGCATGAGACCAATGTGCTGTGGATGCCATAAATGTGTAAAACCATGCCATGGGGGTGAATGTCCCGTGCCTTGCGTCCAACCATGTTCAGTGCCTAGACTATTATGCGGTCATCCATGTAATAAACCGTGTCATAAGCCGCCATGTCCAGAAAGTAATTGTAAACAACCGGTATCTGTCACTTGCCAGTGCGGTCTTCAAAAGGGCACAAAAATTTGCATGGACCTAATTGACGAATACAGGAATATGGAGATGGCtcaaataaaagataaaattgatCAAAACGGAGATGTTTCCCAAATCGTCTCGAAACCGAAAAGAATTAGTGTGATGAGAGTcTTGGACTGTAATGAGGAATGTAAAATTTACGAAAGAAATAGACGACTTGCGATaggtttacaaataaaaaatccaGATTTATCCCAAAAACTAACCCCCAGATATTCTGATTATTTAAAACAGTGGGCGAAGAAAGATGCGAAATTCTGCCAGAGAATCCACGAAAAACTTACAGAGTTGGTACAGTTGGCCAAACAAAGCAAACAGAAAAGTCGTTCATATTCCTTCGAGTCTATGAATAGGGATAAACGTCACTTTATTCACGAATATTGTGAATATTTTGGGATGGATAGCGAAGCCTATGATAAGGAACCTAATAGAAATGTTGTCGCAACTGCCATTAGAGATAGATCCTGGCTGCCAAGTATGAGTTTATTAGAGGTGCATCAAAGGGAAAATGGACAAAGAAAAGTACCACCGCCTGTTTTAGGCTATGGTACTTCAGCTCATTcagaaaatttttcattaaaacttCTGACTAGAGCACCAAAATGA
- Protein Sequence
- MSQFNNSNREESSSQCPSVVSNLQPTAPEYFPLNNSNNGAIKKTFTRQNRNFNKTKALKSRSDGEKFKQSEHASNTFYTSVNSSVKKSHDKKYRNERNSYYKYNNDHYENRDYHSNIDKFEGDDTNYELAEDNSSYYNNKDAYGSRFDKKDRYNSSYPRHDRTNQNQSRTNNYYRENPNYSKRFTSSRSENNHQYYSRKKPNDFHQYSNKNKQRMGKQLTLPVISKDGIYLIHYMYSNFTKKNVFFVANVAGQRERLIDMIDRYALECLVCCDKIRNTEKIWSCLQCYHILHLNCIITWAKSSKVEENWRCPACQNLYTELPSEYRCYCGKMINPKFDPNIIAHACGDVCLKKGKNCDHKCNILCHPGPCPECNVMVSKPCGCGATEQVVKCSSEFKFVCEAYCNKLLNCGIHTCAEKCHTDDCKFCKQVLIQECYCGKTGRKVTCNAEHQGKVHFICENTCGKLLSCSNHNCEKLCHSGPCSSCERDVDLVKFCCCGETPLKEERKSCLDPIPCCDKICNKFLKCGHHCKEKCHEGKCPTCPLTTVIRCRCGNLNKEVTCDELINTSGDILCEKKCNKKRLCGKHKCNQKCCIEVEHICLLPCNRLLTCGLHRCERTCHSGRCPPCLETSFEELFCECGSAVLYPPIPCGTKPPVCIKPCSKSRPCGHPPNHECHTGPCPPCFVLTKKWCYGKHEERSTIPCNQEYFSCGLPCMRPMCCGCHKCVKPCHGGECPVPCVQPCSVPRLLCGHPCNKPCHKPPCPESNCKQPVSVTCQCGLQKGTKICMDLIDEYRNMEMAQIKDKIDQNGDVSQIVSKPKRISVMRVLDCNEECKIYERNRRLAIGLQIKNPDLSQKLTPRYSDYLKQWAKKDAKFCQRIHEKLTELVQLAKQSKQKSRSYSFESMNRDKRHFIHEYCEYFGMDSEAYDKEPNRNVVATAIRDRSWLPSMSLLEVHQRENGQRKVPPPVLGYGTSAHSENFSLKLLTRAPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -