Csor012418.1
Basic Information
- Insect
- Cosmopolites sordidus
- Gene Symbol
- -
- Assembly
- GCA_031761425.1
- Location
- JARFXV010000308.1:1835807-1839471[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.3 59 5.9 0.7 1 20 56 75 56 77 0.93 2 14 0.00037 0.071 15.1 5.8 2 23 90 112 89 112 0.95 3 14 1.4 2.7e+02 3.8 0.1 1 20 117 136 117 138 0.94 4 14 1.1 2.2e+02 4.1 1.6 1 23 147 169 147 169 0.94 5 14 9.3e-05 0.018 16.9 3.6 1 23 181 203 181 203 0.98 6 14 0.0024 0.47 12.5 1.0 1 23 210 232 210 232 0.97 7 14 0.033 6.4 8.9 1.2 2 20 242 260 241 262 0.93 8 14 2.6 4.9e+02 3.0 0.3 14 23 276 286 273 286 0.90 9 14 0.061 12 8.1 0.1 1 21 314 334 314 337 0.89 10 14 0.0019 0.36 12.8 0.0 1 23 520 542 520 542 0.95 11 14 0.21 41 6.4 1.2 1 23 593 614 593 614 0.90 12 14 4.3 8.4e+02 2.2 3.2 1 23 659 681 659 681 0.94 13 14 0.038 7.3 8.7 0.7 1 23 738 760 738 760 0.97 14 14 7.7 1.5e+03 1.5 3.7 1 21 775 795 775 797 0.90
Sequence Information
- Coding Sequence
- ATGGATACGGATGATTTCGATATTAAGGAGGAATACCTGGATAGTGACGAGGACATAAATGAGGAGGTTAACCTAGAAAGTACTGGCGAAGATTTGGACGAgccaaattcaaatatttcaactaCAGAGAGGAAAAGGACACGTCGAGGCCTTTCTGTGAATATTTATCAATGCAGCTTTTGCGGTTATCAGACTCCCTTTCGATACATTTTGAAAAGACATTATTTGGGATGTCAGTTGAACACTGGTGGTATAAACAAAATTTGGGAATGTACAAAGTGCAAAGAAGTATTTACTCACCACAGTTATTTGAGGCGACATAAGCTTAAAACGCACAAGTCACAGAAATTTAGTTGTAACAATTGCTTGCTTGAAACAACTGATGAAACAGATTTTAATATTCACCTTGTTAACAACAAAtgcccaaagaaaaaaatgtatcaatgcGAGAAGTGTCCCTATAAGGCCCACTCAAGGATAAGGGTGATAAATCACGAAAAAACTCACAATCCTAACCGTCAGGgagtttcaaaaaaatgctACACTTGTACACATTGCAACCGAGTACTTGCAACACAAAAACTGTTTAAGAGACATTTGATGAGTCACAGTTCCATCcgaaaaaattattgttgtgaATATTGTGATTATATCACAGAAGATTCTGAAGATCTTGATAAACACAAGATGATACATCCAAAtattcaggagatgattttggTACAGTGTAGCAGAtgtgatttaaaatttttcaatttgaaggAGCTGAAAGAGCATCATGAAAGAGATATTTgtacaaaaagaaaaagcacTGCTAAAGCTACAAGCAACTTGACCAGGCACATCAAACTGATCCATTGTTTAGGCAATAAAGGACTTCCTAACCTCAAACCTCATCCTATAGATGATGATAGTAATCTGAGCACTAATGTATTACAATATATTTGTGAAGTGTGTGATATAGTCATTGTGGATCAGTATCAATTGGCTTATCATAAATTTGACAAACATGgAGATAAAAGTGaacttttaaaatggaaattaaaGTGCTCCATGTGCAAATACAAGAGCTCCAGTAAGAAGATGTGTTTCAACCACGGGAAAATCCACGTTAAAAACGCCAGTCACTCGAAAGTAACATTCAATCAGTTTTACAACGGCGAAAACAGAGGAACCTTCTTCATTGATTATATAAGGAACAAAGTGTCCATCAAAAATAAAGTCAGCATGAAAAGAGATGATCCGATTGAAGAATTAGCTCAAGGTGACCATATCGATGGGGTAAGAGTGGACGACGAAGAAGAGGAAGATATCTTAGaatttaaGGGTAAGATCGATACAGTGAGTTTCTTGGAGGATAAATGTGTGGAAGATGAACGGGAAACGTCAAAGCTGCACAGTATCTTGGACTGGACCGTATCTGATGACGACGAATTGGACGGGGGGGAGGCCAAGGACAACTTTGAAGACGAAGTTCTTACCATTGAGATagttaatgatgatgatgatgatgaagacgTTCTGTTTGAAGTCGATGATGACACAGGTGAGCTTATCTATACTTGCGAAAAATGTGGTGCTAAGTTAGAGAGCCCCGACGAGCTTCAGACTCACGCCGTCGTGCATTCCATGGAAGAAGACGATTCGAATTTTGAACTCACCTTTTACTCGTTGAAAACCAACGAATACGCTCAGAATTTGGAGGTGTCGTCAGAGTCAGAGCCGTCAGACGTGGAAGTAGTGGAACCAAGTGCCGCTGCACGTGGTCGACAGACGTTCAAGTGTACTTTGTGCGGGGAAATACTGACGCGGAAATTCTTGTCTTCCCACACTAATCAGCACGCCGAGGACGTTGAGGATTCTCAGTTTGAGGTGGCTTACGAAGAATACAAGCAAAATCATTTTGTCTATACCTACAAAGTACGAGCAAACTCCCTGGCCGGAGAGAAACTGTTCAAGCTGGGCTTACCGACTTATAAATGCAATTCCTGCGATATCACCCTTCACATAAAGAAGAGCATTAAGCACCACGCGAGCATACACGCTAGAGAAGAAAACGACCCCGATTTCGAGGTCGTCTTTTCGGAATTTCGAAACGACCAGCTCATAGGAACCATAATCACCAAAGGGCAAGTCTCTCTGCTGAAGAGCAATCCGAAAACAACAGGAAATAACGTCGCTCATTTGGGATACGATCCCAACAAGCCAGTATTCAGCTGCGACGAGTGTAATTTCAAGTCAAACGCCAAGGAGGAGTTGGTTAAACATAAGAATCTTCACTGGACGAAGGAGAAGGAGCAGGCTTACAGAGCTAACAGGTGGTTTTCATGTAGTTTGTGTTATTTTCACTGCTTTGACATAGAAACTTTGAAAAGGCATGCCGGTGGTCATAAGAAATGA
- Protein Sequence
- MDTDDFDIKEEYLDSDEDINEEVNLESTGEDLDEPNSNISTTERKRTRRGLSVNIYQCSFCGYQTPFRYILKRHYLGCQLNTGGINKIWECTKCKEVFTHHSYLRRHKLKTHKSQKFSCNNCLLETTDETDFNIHLVNNKCPKKKMYQCEKCPYKAHSRIRVINHEKTHNPNRQGVSKKCYTCTHCNRVLATQKLFKRHLMSHSSIRKNYCCEYCDYITEDSEDLDKHKMIHPNIQEMILVQCSRCDLKFFNLKELKEHHERDICTKRKSTAKATSNLTRHIKLIHCLGNKGLPNLKPHPIDDDSNLSTNVLQYICEVCDIVIVDQYQLAYHKFDKHGDKSELLKWKLKCSMCKYKSSSKKMCFNHGKIHVKNASHSKVTFNQFYNGENRGTFFIDYIRNKVSIKNKVSMKRDDPIEELAQGDHIDGVRVDDEEEEDILEFKGKIDTVSFLEDKCVEDERETSKLHSILDWTVSDDDELDGGEAKDNFEDEVLTIEIVNDDDDDEDVLFEVDDDTGELIYTCEKCGAKLESPDELQTHAVVHSMEEDDSNFELTFYSLKTNEYAQNLEVSSESEPSDVEVVEPSAAARGRQTFKCTLCGEILTRKFLSSHTNQHAEDVEDSQFEVAYEEYKQNHFVYTYKVRANSLAGEKLFKLGLPTYKCNSCDITLHIKKSIKHHASIHAREENDPDFEVVFSEFRNDQLIGTIITKGQVSLLKSNPKTTGNNVAHLGYDPNKPVFSCDECNFKSNAKEELVKHKNLHWTKEKEQAYRANRWFSCSLCYFHCFDIETLKRHAGGHKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -