Csor025612.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cosmopolites sordidus
Gene Symbol
ush
Assembly
GCA_031761425.1
Location
JARFXV010000768.1:1268343-1288585[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.0012 0.22 13.5 0.1 1 20 194 213 194 215 0.95
2 9 2.9e-05 0.0056 18.5 2.2 1 23 258 280 258 280 0.99
3 9 0.008 1.5 10.9 0.7 3 21 314 332 313 333 0.92
4 9 0.14 27 6.9 4.5 2 21 637 656 636 657 0.93
5 9 0.00091 0.18 13.8 0.0 3 21 696 714 694 715 0.91
6 9 0.14 27 7.0 0.1 2 23 751 772 750 772 0.96
7 9 0.0035 0.68 12.0 1.1 1 23 778 800 778 800 0.99
8 9 0.0078 1.5 10.9 0.6 1 23 853 876 853 876 0.95
9 9 0.94 1.8e+02 4.3 0.7 3 21 961 979 960 980 0.92

Sequence Information

Coding Sequence
ATGATAGTCGATTGTTTTTGGCCAGATATTGAAGATATGAATCTGAGCGATATGCAACTCAACAAGACGGCACCACAAGCCACACAACACGACCAATACGAGGCAAAAAATTGGACAGAGCGGCCTGCTGAAAGCTCTCCACCAGAATCCAACCAGCATAGCGGAAACGGTCGGAACATGGTGACAGTGCTGGAGGCACCGCCGAAGAAAAGCGACAGTCCGGATCGTCCGGCATCCGACGATGATCGAAAGAGTCCGACTAAAATCGAACCAGAAGGAAGGCAACCCCGGATTCGTTTGAAAGCGGGATTGGCTACAGATCCTGCATTGAATATGTTGGGCAGCATGAAAAGTGAAATCGAACATCCCAATCCCACACCTGAATACTTATCGTCTCTAGCTCCAGCAATTCAGTCGGCCTTGGCAAGCAGAGCTTTGCTGTTCCCAACAGCCTTGAAGTTGAACGAAGCGGTAGCTGCCGTAGCCGCTGCCCAAAGAGCGGTGACCAGCGAAGCCGTTCGTGCTCCATCGGTGGAAATTGTGCCATCGCCTGAAACATCCAGACCGTCTGTTCCGGTGTATCAGTGTTCTCCATGTGGCATCAGATTTTCTTCTTTGAGTACACTTGAAGCACATCAAACCTATTATTGTTCTCATCGgCCAAATAAACCGTCTGAAGATGACCCCAAGGCAACCAGTTCCGATCCAAGCAGCCAATGTGATGGGGATGGCACTGATTCAACAAACAAAACTTTGCGGACAGCTAAACAGTACACTTGTCCGCATTGCTCCTACAGTGCAGATAAAAAAGTCAGCTTGAACAGACATATGCGGATGCACACTTCCTCTCCTGGACCAGCCAGCAACTCTACACCAACAGCCAGTACTTCTGCAGTTCCAAATGGGGAAGCATCAGGAACCGAAGCTCCAGACAGATACTGTGCCGAATGCGACATACGTTTCAGTTCTCAGAAGACTTACCGAGCTCATAAAATGCATTACTGCAATTCCAGGCACGTCGTGAAACAAGCAGCACCTGCATCGAGTTGCACGTCGGGATCTTCCCCGACAAGTCCTGTAGATCCATCCACTTGCCGAACCCCTCCATCACCGACGTCTCAGTTACCTCAACAACCATTCTTAGCGCTTCCAACAAATCCAATCATAATAGTACCTTACTCGTTGTTCAGATCAGCCAGTGTCCTACCATCGTTATCTAACACTACCGGTATCACAAATCCTGACGCTCCATGTTTCCTGCTACCAAATGGTACTTTGCAACCGATGACCAGCGCGCTATCCGCAATGAACGCAGCCGCAGCGGCAACGCAGGTACAACAGAGCCAAACTGCATCAGAACAAGTCCTGAAGGCGATAAACAAAGGGAATAAGGAACCGATTGCCCCGAAGGAAAATACTGCTTCGGCTCCTTTGGATCTTACCGTGCGAAAATCACCAGAgctgaaagaaaaagaaagaaatggTACACCGAAATCAACTGACATGGATTTGGATCAAGAAAAGGAGAATATGAATCAGCAACCGTCCTCTCCAGAAAGAATTGAATGCGAACCTTTGATGATTCAACATTCGCCCTGTTCCACGCCTGGACTGGCCGTTGACAAAAGTTCCCCTGGTTTAAGCATCAGTCCCAAAAGGAAACTGGATGACTTATCCCGAAGCAATAGCCCTAGatcgTCCAAGACTCCTAAATTGAGCATCGACAAAGCTAGTCCTGACACAGTCATACCAACTGGATCACAATTCGATATTCCTCCTACTTTACATCCCTTGTTGCTGAGAGCAGGGAATATGCCACTGTTCCCACCAGAGTTGCAGATGCGCTTGTCCGACCTGGCGCCTTTACCACCAGTCATGCCCCAAGTCATAGTTAAACAAGGAGTTTCTAAATGCAAAGAATGTAACATTGTGTTTTGCAAACACGAAAACTATGTCATCCACAAGAAACATTATTGTTCAGCTCGCAGTTTGGAAGATGACAGTTCCAAAACAAGTGGAAGTCCACCAGTCAGTCCCAGAAGTGGTGGTACTACTAGTCCAGCAGCTCAATACCAACAACTAATCTGTTTAGCTTGTGGTATTAAATTTACTTCACCAGACAACCTGAACGCTCACCAGCAGTACTACTGCCTCAAACGGAATGATTTGGAGCCGAAGAAATGTCTTAAATGTCGAGCGGTGGTTGAACCTGGACATCAGTGTGTCTCGCACACGGCACTAGCAGGATGGAAATGTCCATGCTGCGATGTTATCAGCGCGACAGCAAGCGCGGCTCAACGTCACATGGAAACTCACACAGGCGTAAAGGCATATCGCTGTacaatttgcaaatataaagGCAACACCCTGAGAGGAATGAAGACGCATATCAGAGTACATTTTGATAAAAGATCGCCCGATCTTCAGGAAGAAAAGTACATCTCCTACATATTAGAAGGTAACAGTATGGGTGCTGGAATAGCTGAAGTACCCGTTGCAACACACATTCCTCTAGATGATCGTTCTTCGCCGAACCCCGAGCGACCTGACCCTCAACACTCTTGTTCTCAATGCCCCTATACTTCTCCATATAAAGCCAATGTCGTACGCCACATCAAATTGGTTCATGAAGCCAATATGGATGAACATTTCAGTAATGGAGATGAAAAGGGAGCACCTAGCTCTGCGAAAAGTATGCCGCAATTAGATGACGAAGAAGAGATCATTGttaAAAAAGAAGCTATGGAACCTGAAGTGATCATAGCACCAGTGGAAGGGGCCACCATCAAAGAAGAACAACCAGAACCGTCCACCACTCCAAATTCCAAAACGTCGGACGATGAAATCATGCAGGAGGCATCAAAAACCGGCCCGAACTATTGTAAATCTTGTGACATATACTTTAATTACTTAAAGACTTTCATAGCgcataaaaagttttattgttcGAGTCATACAGGGGAGATTAGCAATGcaaacaacaacaacaatacAGGCACTAGAACAGCGGAGACGTctgttttataa
Protein Sequence
MIVDCFWPDIEDMNLSDMQLNKTAPQATQHDQYEAKNWTERPAESSPPESNQHSGNGRNMVTVLEAPPKKSDSPDRPASDDDRKSPTKIEPEGRQPRIRLKAGLATDPALNMLGSMKSEIEHPNPTPEYLSSLAPAIQSALASRALLFPTALKLNEAVAAVAAAQRAVTSEAVRAPSVEIVPSPETSRPSVPVYQCSPCGIRFSSLSTLEAHQTYYCSHRPNKPSEDDPKATSSDPSSQCDGDGTDSTNKTLRTAKQYTCPHCSYSADKKVSLNRHMRMHTSSPGPASNSTPTASTSAVPNGEASGTEAPDRYCAECDIRFSSQKTYRAHKMHYCNSRHVVKQAAPASSCTSGSSPTSPVDPSTCRTPPSPTSQLPQQPFLALPTNPIIIVPYSLFRSASVLPSLSNTTGITNPDAPCFLLPNGTLQPMTSALSAMNAAAAATQVQQSQTASEQVLKAINKGNKEPIAPKENTASAPLDLTVRKSPELKEKERNGTPKSTDMDLDQEKENMNQQPSSPERIECEPLMIQHSPCSTPGLAVDKSSPGLSISPKRKLDDLSRSNSPRSSKTPKLSIDKASPDTVIPTGSQFDIPPTLHPLLLRAGNMPLFPPELQMRLSDLAPLPPVMPQVIVKQGVSKCKECNIVFCKHENYVIHKKHYCSARSLEDDSSKTSGSPPVSPRSGGTTSPAAQYQQLICLACGIKFTSPDNLNAHQQYYCLKRNDLEPKKCLKCRAVVEPGHQCVSHTALAGWKCPCCDVISATASAAQRHMETHTGVKAYRCTICKYKGNTLRGMKTHIRVHFDKRSPDLQEEKYISYILEGNSMGAGIAEVPVATHIPLDDRSSPNPERPDPQHSCSQCPYTSPYKANVVRHIKLVHEANMDEHFSNGDEKGAPSSAKSMPQLDDEEEIIVKKEAMEPEVIIAPVEGATIKEEQPEPSTTPNSKTSDDEIMQEASKTGPNYCKSCDIYFNYLKTFIAHKKFYCSSHTGEISNANNNNNTGTRTAETSVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01307551;
90% Identity
-
80% Identity
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