Csor022094.1
Basic Information
- Insect
- Cosmopolites sordidus
- Gene Symbol
- -
- Assembly
- GCA_031761425.1
- Location
- JARFXV010000633.1:693570-698968[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.46 88 5.3 0.9 1 23 317 340 317 340 0.92 2 11 0.25 49 6.1 2.2 3 23 346 368 344 368 0.87 3 11 0.00052 0.1 14.6 1.7 2 23 371 393 370 393 0.97 4 11 1.1e-05 0.0022 19.8 0.6 1 23 403 426 403 426 0.95 5 11 1.1e-05 0.0021 19.9 1.5 1 23 431 454 431 454 0.95 6 11 0.00093 0.18 13.8 0.4 1 22 497 518 497 521 0.91 7 11 0.0003 0.059 15.3 0.6 1 23 524 546 524 546 0.98 8 11 0.0001 0.02 16.8 1.0 1 23 572 594 572 594 0.98 9 11 7.1e-05 0.014 17.3 5.0 1 23 600 622 600 622 0.99 10 11 2.2e-05 0.0043 18.9 0.6 2 23 629 650 628 650 0.97 11 11 1.5e-05 0.003 19.4 0.8 2 23 657 678 656 678 0.97
Sequence Information
- Coding Sequence
- ATGAATACAGAAACTGTATTAAATTATCCATTAGAAATTACAGATATAAACAACAAAAAGAaatgtttaGATATATATTCTGCATGCAGGGGTTGTTTGCAAAACGAGAATTTAAACGTGATGAAAGAAACTATGATTGAAGACATAGATGCTATCAAATGTTATGAGAATATAACCAAGAAACAGATAGATTTAAGAGTACCAGCAAAAATGTGTACTAGCTGTATTACCCAATTATTGGAAACAcataaatttcttaaattacTTGATTGGGCTGATATTGTATTACAAAAAGCTTTAGATAAAATTGGATTAGAGAATTTAgaatcaacaaaagaaaatgatAAGTCAATATCTAAAGATGAGAGAAATGAAGATGATGATGCTTTTTTAAATGACAGCAATGTAACAGATAGTCAATCATCGGATGATGATGTTTCAATATTagagaaatttaatattaatgcaGAAGAGGCCAAGAACATTTTGAAGAAATGGAAtgttttagaagaaaataacagTGTTAACAGAGTGAATGATCAGGAGCCTCTGCTGGATTATCCATTTACAGCAGGAATATGTCTCCTTTGCCAGAAAGAAGCAAAACATCCAAAAAAGCATTTAACTAAAATTCATCATGTAGATTGGTCaaaattgaaatgtttaaaatgttctTTCGAAACAGAtgataaattaaaattgatggAGCATTCTAAAGAATGTGCTACAGGACTATTGACGCAAAATGATCCTGAAGAAAACCTTGAAggtgataatttaaaattaggggtacatttatttgaaagAGAATGTCAGAAAAGAGGCAGAggaaaaaaagatagaaaaccTAAGAATAGGTCAAAGTTTAATTGTAATCAGTGTGGAAATTTTGGTTGTATCAAGTATGAGGAAATTGAGGCACATTATAAAgagTGGCATAGTTCTAATTTTAACTGTATTATATGTGAGCAGAAATTTGGACATTCTTATGGTGTATTATACCATATGATGGTAAAAcatggaaaattaaaatgttgtcGATTGTGCCTGGTTAGTTTTAAAACTACAGATGAACTCATGTATCACTACAAATCAGAAGAACACAATACAAAGTGTGTTGTGTGTGATGAACAatttaaaaatagaaaagcccTATATGAACATCGAAGAAAGAAACATCTTAATCCTTTGTTGGagaacaaaaaattcaaatgtcCAGAATGCTCAAAAGAATTTGTAAATAGACAAAATATCAAGAGGCATATTTTGGCTTTCCACAACAATGTTCGGTTTTTATGTGATACTTGTGGACAGAGTTACACAACAAACAGAAATCTTCAATTGCACATAAAGAAGTTTCATGAGGGTCAAGAagttaaaaccaaaaatcaaaaaaagaacTTCTTTTGTGAGGCTTGTGGTCGGGAGttaaaaatattccacaaaTATGCTATCGCCGTGCACAGGGCTAAACATAAAGGGCACAATTATGTTTGTAAAAAATGTAATGAATCTTTTGCTTTGGAGAAGGAATTTCAGGTGCACATTCAGGAACAAAATCATCAACTGTTTGAATGCCCAAAATGCTCCTCGGAGTTTATACGAGAAGAAAACTTTAggatacatttaaaaaatcacgatgCGCCCGGCTGGAACAAAAACTATTTCGTTCAGTATGGCAAGTCGGCAAAATTACGGAACGAGAAAGGAGAGTTTGAGTGCAGTTACTGTCCAAAAGTGTTCAAAATGAAGCAGAGACTGGACAACCATGAGAGAGTTCACACAAACGAAAGGCCCTACAAATGTCACGTCTGCCAGAAAGCGTTTAAAACCTGGATTCATCGGAAGACCCATTTAAACGTACACTTAGGAATCAAAAAGTGGCAATGTCGATATTGTCAGAAAGCTTTCACTTATTCCAGCGCGCTAAAAGGACACGAAATGACACATACAGGAGAGCGCCCCAACAAATGTCCGGAATGTAAGAAAGGCTTTATTTCCACTTCTGCATTGAAAAAACATCGACAAGCTCATTTCAGAAACGGGACACTAAATAGTGAAGAAAAGGTAAATAAAAACTCAAAGAACGTCGAAAAAAAAGGAGAAGGCGAAGAAGAAAATGCAGAATTCTTATACAAATACAATCATATGTTTGGCAACAGTGATGTGAGCTATGAGAGTTATTCTGAACCACCAAAAGATCAAGCATAA
- Protein Sequence
- MNTETVLNYPLEITDINNKKKCLDIYSACRGCLQNENLNVMKETMIEDIDAIKCYENITKKQIDLRVPAKMCTSCITQLLETHKFLKLLDWADIVLQKALDKIGLENLESTKENDKSISKDERNEDDDAFLNDSNVTDSQSSDDDVSILEKFNINAEEAKNILKKWNVLEENNSVNRVNDQEPLLDYPFTAGICLLCQKEAKHPKKHLTKIHHVDWSKLKCLKCSFETDDKLKLMEHSKECATGLLTQNDPEENLEGDNLKLGVHLFERECQKRGRGKKDRKPKNRSKFNCNQCGNFGCIKYEEIEAHYKEWHSSNFNCIICEQKFGHSYGVLYHMMVKHGKLKCCRLCLVSFKTTDELMYHYKSEEHNTKCVVCDEQFKNRKALYEHRRKKHLNPLLENKKFKCPECSKEFVNRQNIKRHILAFHNNVRFLCDTCGQSYTTNRNLQLHIKKFHEGQEVKTKNQKKNFFCEACGRELKIFHKYAIAVHRAKHKGHNYVCKKCNESFALEKEFQVHIQEQNHQLFECPKCSSEFIREENFRIHLKNHDAPGWNKNYFVQYGKSAKLRNEKGEFECSYCPKVFKMKQRLDNHERVHTNERPYKCHVCQKAFKTWIHRKTHLNVHLGIKKWQCRYCQKAFTYSSALKGHEMTHTGERPNKCPECKKGFISTSALKKHRQAHFRNGTLNSEEKVNKNSKNVEKKGEGEEENAEFLYKYNHMFGNSDVSYESYSEPPKDQA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -