Csor027907.1
Basic Information
- Insect
- Cosmopolites sordidus
- Gene Symbol
- -
- Assembly
- GCA_031761425.1
- Location
- JARFXV010000858.1:1231475-1236468[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.9 3.6e+02 3.4 0.1 8 23 277 292 272 292 0.92 2 13 0.2 39 6.5 0.1 6 21 302 317 302 318 0.95 3 13 2.1 4.1e+02 3.2 2.0 1 19 421 439 421 445 0.88 4 13 7.7e-05 0.015 17.2 3.9 2 23 450 471 449 471 0.96 5 13 1.6e-06 0.00031 22.5 3.7 1 23 477 499 477 499 0.98 6 13 0.012 2.3 10.3 0.6 2 23 505 527 504 527 0.91 7 13 6.1e-05 0.012 17.5 0.4 2 23 548 569 547 569 0.97 8 13 0.0024 0.47 12.5 1.4 1 23 575 598 575 598 0.94 9 13 8.5e-05 0.017 17.1 2.4 1 23 601 623 601 623 0.97 10 13 1.1e-06 0.0002 23.1 0.5 1 23 631 653 631 653 0.99 11 13 2.3e-06 0.00044 22.0 2.9 1 23 659 681 659 681 0.97 12 13 0.00034 0.067 15.1 4.6 1 23 687 709 687 709 0.99 13 13 0.00072 0.14 14.1 4.4 1 23 715 738 715 738 0.98
Sequence Information
- Coding Sequence
- atggcaaaaattgaaactaacatagcaataaatgactttaataatatttgtcgGACCTGTTTAAGTCATGGATCGGACCTAAAACCCATGTATGAAGTTCACTTGGATGATGATGTTGAGGTTGATGTATCCCAAGTATTCAAACAATGTTGCAAGTTAGACttggATCGTTCAGATAATAAGCCACAGAACATATGTAATTCCTGCATCATTTTGTTGGTTCAGTcagtttgtttttttgaaaaagtgattaGATCAAACAATATTTTGGATGGAATTTTGCATAATAAGATTAACCCAGGTAATGTTCTCAGTGAGGATTCAAAAAATGTTGTTCAAAATGTGGtcacaaaagaagaaaaattgtgTAATGACGATTTGAATCCTGTTGGGGGaaaatcaaaaaaggaaaagacCATTATCAGCGATACCGAAGACGACACGTTTATTGAAAATGATAATGATTCAGACTGGATGCCTTTGAAAGATGAGATAAATAATGGAGATATTAAACTAGAAACTTCAACAGACTTTTATTGCTTCAGAAAAGATAGGTACAAAAGTGGAAATATATCAGAAAATGATGTGGATAATGAAAAAAAACCAAtaaaaaggAAACTGCAAAAAATCAAGCAATCATCTAGGAAGAGAGGTCGGCCAAGAAAAAATCCAGATGGCTTGGAAAATTGTGTCATTCAGGATTCCAAAGATTTTGAATGTAGACTTTGTCAAGAATATATTTCAGACATCAATGCAGCCATTGATCATTATGATGAAAATCACGGACCTGAAGCAGATATGAATGAGTGTATATTGTGTGAGAAGCCTAAAGGTTATAAAAATAGGGAAAATTTCTTGTATCATATGGCGCTACATTCAAAGGACAGTGCAAAATGTATACCTTGtagaaagtattttaaaaatgaagatTTACTCAAACAACACCTTCAAGAGTGCCTTAAGGGTTCTGAAAATGTGATTGATGTAAAACAAGAGGAGTGTATTGAAGAAGAAATTGGGAAGCAAGATACAATAAAGGGTGTGAACAAAGCTCAACTTCCCGCAAAAATCTTGAAAGAAACTCAAGTAGATGGTGCCTTCTCTTGTCAATTGTGTGTCAACAAAAAATTAGGAGAAATCGACGCGGTTATAGATCATTATGAAAAAGAACATATCGATGATCTACAGTGCATTATCTGCCTGAGAACATTTACAAAACGAGTTCCCTTATTTCATCTTAGTTTACATTCTCGAAAGAGCCATGTTTGTAGACCGTGTCGGCgatattttaaaacgaaagaaCAGTACAACGATCACAATGTGAAATATGACCACGACAATTCGTTGAGTTGTCGGTTTTGCGGTAAAACTTTTagcagaaaatataaaaagAATAAGCACATGTTAAGCCACTTGAAGGAAAAAAACTATTCTTGTAATAAATGCGGAAAAACATTCACGTACAAAACAAGTCTTGTAAGGCATTTTAAGATGCATTTTGGAAAAAGGTTCCTGTGCTCTGCCTGTGGGAATGCCTACACTACAAAGTTCATGCTACAAAGACATTTCAATCTAGTTCACAAAAATGTCGATGCCGAGGGAAATCCCTTACCCAGACCCCCACCCACTCCAGTCAATCTTCAATGTGAATTTTGTGGCGAAATATTTAATACTAGATATGGCTACGGTAGGCATATACGGCGGCATCCCGAGTTCACCGAGTATAAATGTAAGATATGTTCTGTTACGTGCGATACTCGGGAACAATTAGACGAACACATGGACGAGCGTCACAACAAGCACACCTGCGAAGTTTGCGGGAAACGTTACGCCTTTGAAAGCGAACTTAAAACGCATTTTCGCCAACACGAAGACATCAAGCTGGCCAAATTCAGATGCGAAACGTGCGGCAAAGTTGCTCGCACCTCCAACCAGCTGAAAATTCACATGCGGATACACACTGGCGAACGGCCATTCTCGTGCGACACTTGCGGGAAGTCGTTTAGACAAACAGCTCATTTAAAGGTCCATATGTATCAGCATACTGGCACGATGCCCTTTAAATGCAAAATTTGTGAGAAGTGCTTTCCCTTTCAGCACATTTTGGAAATTCACCTGCGGACACACACTGGGGAAAGGCCATTCAAATGTACGATTTGTGGAAGTGCTTATTACGACCGGACAACATTACACAAAcaccaaaagaaaaaacatCCGGAAGTTCCAATACCGAAATGGAGCAGGTCCGAGTATAAAATGACCAAGTTGTAG
- Protein Sequence
- MAKIETNIAINDFNNICRTCLSHGSDLKPMYEVHLDDDVEVDVSQVFKQCCKLDLDRSDNKPQNICNSCIILLVQSVCFFEKVIRSNNILDGILHNKINPGNVLSEDSKNVVQNVVTKEEKLCNDDLNPVGGKSKKEKTIISDTEDDTFIENDNDSDWMPLKDEINNGDIKLETSTDFYCFRKDRYKSGNISENDVDNEKKPIKRKLQKIKQSSRKRGRPRKNPDGLENCVIQDSKDFECRLCQEYISDINAAIDHYDENHGPEADMNECILCEKPKGYKNRENFLYHMALHSKDSAKCIPCRKYFKNEDLLKQHLQECLKGSENVIDVKQEECIEEEIGKQDTIKGVNKAQLPAKILKETQVDGAFSCQLCVNKKLGEIDAVIDHYEKEHIDDLQCIICLRTFTKRVPLFHLSLHSRKSHVCRPCRRYFKTKEQYNDHNVKYDHDNSLSCRFCGKTFSRKYKKNKHMLSHLKEKNYSCNKCGKTFTYKTSLVRHFKMHFGKRFLCSACGNAYTTKFMLQRHFNLVHKNVDAEGNPLPRPPPTPVNLQCEFCGEIFNTRYGYGRHIRRHPEFTEYKCKICSVTCDTREQLDEHMDERHNKHTCEVCGKRYAFESELKTHFRQHEDIKLAKFRCETCGKVARTSNQLKIHMRIHTGERPFSCDTCGKSFRQTAHLKVHMYQHTGTMPFKCKICEKCFPFQHILEIHLRTHTGERPFKCTICGSAYYDRTTLHKHQKKKHPEVPIPKWSRSEYKMTKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01307483;
- 90% Identity
- -
- 80% Identity
- -