Csor021099.1
Basic Information
- Insect
- Cosmopolites sordidus
- Gene Symbol
- -
- Assembly
- GCA_031761425.1
- Location
- JARFXV010000597.1:267627-274617[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 6e-05 0.012 17.5 3.0 2 23 63 84 62 84 0.97 2 11 0.096 19 7.4 0.0 1 23 104 127 104 127 0.93 3 11 0.0077 1.5 10.9 1.3 1 15 131 145 131 153 0.88 4 11 0.0085 1.7 10.8 0.0 2 23 160 182 159 182 0.95 5 11 0.017 3.3 9.8 0.5 1 23 188 210 188 210 0.85 6 11 0.00042 0.082 14.9 1.0 1 23 216 239 216 239 0.95 7 11 6.6e-05 0.013 17.4 0.6 2 21 251 270 250 273 0.90 8 11 9.3e-05 0.018 16.9 0.7 3 23 285 305 283 305 0.95 9 11 2.8e-05 0.0055 18.6 3.1 1 23 311 333 311 333 0.97 10 11 3.3e-06 0.00064 21.5 0.8 1 23 339 361 339 361 0.98 11 11 0.00049 0.095 14.7 0.1 1 20 367 386 367 387 0.95
Sequence Information
- Coding Sequence
- ATGAAAATAACTAGAAAATCAGGCAGAAGGAAACTGATAATaccaaaaatagaaatagataaTTATTCGTATGATCCTGAATTAGTCGAGAAAACGAAAAAGAAAACCAAAGCTATGAACAAACTAAAACGTGGTGAACAAAAGATCAAGAGAAAACGGAGACGTAATAATTCGGAAATAACGTGGTCGTGCAAGAAATGCCCTGAAGTATTTACGACCTGCAGATTGTTAAAGATTCATCGAAAATCCCACCTCAAAAATAATCTTACTGAAGATCATACTTACAAATTCGACGCGATCCAGGACATCTATATTTGTAACACTTGTTCGGCCGAGTTTCCCGATGAACAAGAGGCGAAGGATCACATCGCGAACAGACATGAAAAAGAATACAGTTGTAGTGAATGTAACGAATCATTTAAAACTCCGTATGAGATGGGATGTCATTCGGCAGTACACGACGCTGAAGGTAACGTCAGTTGTCCTTTGTGTCCTTACCGAACTCCTAAAAGGGGAGCTCTGTTGATTCATATCAATTACGTACATTTGAGGAAGTTTGCGTATTTTTGCGAGACGTGTGGGAAAGGATTCAACGATCAGCTTATCTTTAAAGAACATGCCAATGAACATTTAGGAGTGAGGCCTTTCGTTTGTGTTGTTTGTGAGAAGACCTTCACTTATACCAGATATTTGTATACGCATCAAGTTCGGGCACATCGTGTCTCAATTGATGGACAGCTTTTACCTAATCAATGTCCGTACTGCAACCGAAAATACAGTAAACCCGAAACTCTAGAAAAACACTATGTGGACACCCACTTCAAAACAACGCCTCACGAAAAGAAACATCTTTGCGTTACATGCGGCAAAGGATTTGCCCAACGTAGTAAACTGGTTATGCATGAACGAGTACATACAGGTTACAAACCCTACGCCTGCAGATACTGCGAGAAATGCTTCACCAAAAAAGATTACCTGGTGATGCATGAGCGCGTTCATAGCGGCGAGAAACCTTTTTCCTGCGAATACTGTGGTAAATGTTTCAATCAAGGTGCTCCATTAAGAATTCATTTGCGTATCCACACCGGAGAAAAACCCTATGAATGTCCCATCTGTTTGACAAGATTCACATCAAGAGGTGCCCTAAACCTCCATAAAAATTGCGTAGCTTTCAATTCTATTCCGTTTTAA
- Protein Sequence
- MKITRKSGRRKLIIPKIEIDNYSYDPELVEKTKKKTKAMNKLKRGEQKIKRKRRRNNSEITWSCKKCPEVFTTCRLLKIHRKSHLKNNLTEDHTYKFDAIQDIYICNTCSAEFPDEQEAKDHIANRHEKEYSCSECNESFKTPYEMGCHSAVHDAEGNVSCPLCPYRTPKRGALLIHINYVHLRKFAYFCETCGKGFNDQLIFKEHANEHLGVRPFVCVVCEKTFTYTRYLYTHQVRAHRVSIDGQLLPNQCPYCNRKYSKPETLEKHYVDTHFKTTPHEKKHLCVTCGKGFAQRSKLVMHERVHTGYKPYACRYCEKCFTKKDYLVMHERVHSGEKPFSCEYCGKCFNQGAPLRIHLRIHTGEKPYECPICLTRFTSRGALNLHKNCVAFNSIPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01307447;
- 90% Identity
- -
- 80% Identity
- -