Csor043245.1
Basic Information
- Insect
- Cosmopolites sordidus
- Gene Symbol
- -
- Assembly
- GCA_031761425.1
- Location
- JARFXV010001756.1:160094-180615[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 6.5e-05 0.013 17.4 0.5 2 23 171 193 171 193 0.97 2 19 0.17 32 6.7 2.2 1 20 371 390 371 392 0.93 3 19 1.4 2.8e+02 3.8 4.2 1 23 421 444 421 444 0.95 4 19 0.72 1.4e+02 4.7 1.4 1 19 477 495 477 500 0.90 5 19 0.012 2.3 10.3 2.0 2 23 592 613 592 613 0.97 6 19 0.1 20 7.3 0.1 1 23 638 660 638 660 0.90 7 19 0.0001 0.02 16.8 0.2 2 23 664 686 663 686 0.90 8 19 0.00025 0.048 15.6 0.6 2 23 720 742 719 742 0.92 9 19 0.00011 0.021 16.7 0.5 1 23 790 813 790 813 0.97 10 19 0.0021 0.4 12.7 2.4 2 23 826 847 825 847 0.97 11 19 0.085 16 7.6 7.5 1 21 883 903 883 905 0.94 12 19 0.074 14 7.8 1.5 3 23 918 939 916 939 0.89 13 19 0.00049 0.095 14.7 1.5 3 23 980 1001 979 1001 0.97 14 19 0.018 3.5 9.7 0.0 2 23 1021 1042 1020 1042 0.90 15 19 0.96 1.9e+02 4.3 0.1 1 23 1085 1108 1085 1108 0.94 16 19 0.0011 0.21 13.6 1.4 2 23 1119 1140 1119 1140 0.97 17 19 0.00047 0.091 14.7 1.6 3 23 1161 1181 1160 1182 0.95 18 19 7.4e-06 0.0014 20.4 1.0 1 23 1190 1212 1190 1212 0.98 19 19 0.0011 0.22 13.5 0.6 1 23 1244 1267 1244 1267 0.94
Sequence Information
- Coding Sequence
- ATGGCGGAGCATCGGACCGGCGAATACCTCAACGTCTGCAGACTGTGTTTGTGCGGGAGGACCGATTCGCTCAAGTCCATTTTCGATGTGGCCCTGGGCCCGAACCGACTTCCGCAAAAGATTCAGCAATTGGTGGCCATCCAGGTAAATCGCCAAGACAAATTTTCCACTTTGATCTGCAATGACTGCATCATCAGGTTGGATACATTTCACGCATACAAACGGGAGTGTCACCGGAATCAGACGAAACTTGCCGAATGGTTAAACAACGCTGATGGATCCACTCAACACGAACCTATTCTGCAGATTAAACCGGACCCGTATCTTTACGAAGGAAACGACATGGCTACCATGAACGGAAACCATTCTATGTGGCCCATCAAGGTTGAAATTGCCGAGCCTATGGATGAGGAGTATAACGATTTACCTCCACATCTCACTCCACATTCCTACGACTCCAACAGCGAACCCTTTTTGTATAATTCTCCAGTACAACCAGAAGATGAACGTAGATGTCCTGAGTGTGGAAGACTATTTGCTTCATATCAAAACATGAAGAGACATCAGAACATGGTTCACCGGAAAGATAAAAGAACCCCCATGAATGAGATTAAAAAATCACTCTCTGAACCGGCGGAAGGCGAAGACGGACAAGACGACGAAGCAGAAAACGGAGACAAGGACGAAGAAGAAAATGATGATATTATGGAAGAATCTTCGGTACAGTTGACCGAAAATCATGGTGAGGTTGATTTTTTAGATGAAGATAATACTGAAAAAGATAAATCACTGGAGGAGGGACACGATGATGACAAACCTCCGGAACTGGAAACAAATTCGGTCGATCCTCTGTCGGAGAACGTGTTAGAAGAAGGGAACGAAAGTGACCAGCAAAAGATTCAGTTTGCTGCCGGTTTGAAGCTGGTGCAGAAGGACTCCACTCCCATCGAGTGCCAGGCGTTATCGAAGATAGAACTGAGCTACATCGAGAAATGCAAGGCGATGGTGTCGATGTTTCATACGTTGCAGTGCGCTTGTCACAACGTCCAGCACAAAACAGTACGCAACTTGCTGTCACATTTGCGCGAACTCAGAATTTGGTTTCCCTTGTTTACCTGCTACAGTTGCATGATTTCCTTCACCGACAGATCTACGTTCACCAAGCACTACACTAAGTGTCCCAAAAATCAACTCGAGACATTGATCAAGCTGTCGAACTTGAAGAAACGCAGCGAAATGAAGACGAGACTCTACCAGAACTACAAGTGTAATCGTTGTCGGTTTCTGTACAGTTTCTACGATGATTATTGCAAGCACATCGAAGAGGAACACGCGGCGGGAGAACCTCCGTTTTACTGTTCGTGCAGGTTCGTTTTCGACACCCTGGAGGAATACAAGAGTCATTGTTACAACTCATGTGTTCTTTCGTATTATTGCGACATTTGTTTCATTACTACGGCTAACCTGGATGAGTTTGTGAAGCACTGCCAAGAGCAACACGACCAGTCTGAAGGTTTTGTGCTCTTGCAGGAGGACGGATACAGCCCTAGAAAGTCATTCCAACCTAAGGAGGCAGACGAGGAAGTCAATCTAGTGGAGGGTAAAAGGGAACGAAGAAGATCAATAAAACCCCCTGTTTTTGACGATATGTTTGACGACGAAGTTGACAAAGAAGTCCCTCCAGACCCTAAAAACATTCCAGCGAAGATAATCGCGACGAAAATTCTTAACATGGACGGTTTGAAAACAGCAGCGGATTGGAGAAACCCAGCTAGTTGCCCTACTTGTCTCAAGGACTACTCCAGCGTTCACAACATGGTGAGACACTACAAGACTCACATAGAACGAAACGAAGTGGTGATTCCACCTCATGTCTTAAAAGAATGTCACACCGCAGAAAACAGCACACTATATTCGTGTCCGGATTGTGGAGGAATGTATAATTCCGTAGACTGGACGCAGCACCTTGAAGAAAGTCATCCTTCGATGCCATGCGAAGATTGCGATGAAGTTTTTAAATTCCAGTCGGAGCTGGAGCAACACAGAACTGACCAACACCAAGAGAAAGGCTATGGGGACGTTGAAGTTCACCCTTACAGGCGCAGACTGTTGAATCCCGGTCCGAAAATAGAAAACATAACAGATGGAGTGATGGTGATGTGTGATTTGTGCGACACCATGTTCAAAACCAAAGAAGACTTGAAAAGTCACAAGTTATTATACCATCAGCCATCTTCCAACATGTCTCAGTCGGGTAGTTCCGTAAACGGTGATGGTTTCGAGGCGGAGGAAGACGATGACAATATGCCCATATTGGAcaacgaagaagaagaagaggaagatgTTAAATCCGAATTCATGGACAAGTACGTTTGTGATCAGTGTGATCGGGTTTACGCCAGCGTGAAGACTCTAAAAGAACACATGAAGAACAAGCACGGAACTCTCTACGTTCAGAAGAACGAGTTCCCGAAGAAGTGTGATTATTGCGACAAGATGTGCACCACGGGATCAGCACTGTATCTGCACACTCAAATGCACGAGCGCATGACACTGAGCGATTTACGCGAGGACAAGACCGCCATCGGGAAAGCTCGGAAAAAGTCCGAACTAGAAGAGACTTTCGAGACCGAAGAAGAGTCCTATCACATGTGCAAGTACTGCTTCAAGGTGTTCGGAACGAAAGGACGGTTACTCCATCACATGAAATGTCACGGGGTCAGTACGATCAAACGAACCAGAAAGCATCTATGCGACTTGTGTCACACGTCCTTGGACAGTAAGGAGGAGTTGGAGAAACACAAGGCGGAGGAGCACGCGGACGAATTGGACGACATGCCTCAGCTGGTGAATCAAATGGAGGTAGAGGTGGAAATCAAGCAGGAAGTTGAGGAACCCAAATTTGAAATACCAAAGATAAAACCTCCCCCTGTGCTTTGTAAACATTGTCTACTTACGTTTACTTCCGTGGGTGATTTGACGAAGCACATGCGAGAAGAACACAGTCCCAAACCCAGAGTGGTCAAGGAGAAACGCAAGGATAGCGTAGAAAAGAACGTGAAATGTCCGTTATGCAAGAAAGCCTTCGCCAGCGTCGGCGCAATGACCGCACACGCGGGCTGGCATAAAAGGGCGGGCAGCAGACTTGAAAACCCCGAAGCCAACTCGCCCCAAGCCATAGCCGCCCTTAAATTAGCCCGACAGTCGAGGGTGTTTAAGAAAGCCCCACCTCCCAAACCACAACCTCCGAAGTTCCAGTGCACCACCTGCTTCGCCCAGCTTCCCAACGACACCGCCCTCCAAATCCACATCTTGGAGAAACACAGAAATGTCGCGGAAGTAATGCTAGTACCGCGATGTAACACCTGCAACAAAGATTTTGCCTCCCAAGCCGAATACGAGACCCACAAACGATTCCACGAATTTCTCGAACGTCAAAAGAAGCATGGCAATCCTTCGCCACCGGTAAAGAAGAACCCGTGCAATTACTGCAGCTCCAGGTTTACCAGAACGGATACTCTGGCCGCTCACATTCGACAACATCATCCCGAACACGTCAAGACAGAGTTCAGGTGCAACCAATGCGATCGCGTGTTCGAGAAACAAAATTCTCTAACCATTCACTTGAAGGTGCacgagaaacaaaagaacggtGGTGTAGTGGTGGGAGGTGGAGGAGGCGGCGGAGGGGGTGTAGGAGGAGGAGGTGGTGCTCCGTCAGCTAAGGTTTATTTGTGCCCCATCTGCAACATGACCTTTAACTTCACCAAGGACCTTCGGATGCACACAATCAAGGCTCATCCTTTCTGA
- Protein Sequence
- MAEHRTGEYLNVCRLCLCGRTDSLKSIFDVALGPNRLPQKIQQLVAIQVNRQDKFSTLICNDCIIRLDTFHAYKRECHRNQTKLAEWLNNADGSTQHEPILQIKPDPYLYEGNDMATMNGNHSMWPIKVEIAEPMDEEYNDLPPHLTPHSYDSNSEPFLYNSPVQPEDERRCPECGRLFASYQNMKRHQNMVHRKDKRTPMNEIKKSLSEPAEGEDGQDDEAENGDKDEEENDDIMEESSVQLTENHGEVDFLDEDNTEKDKSLEEGHDDDKPPELETNSVDPLSENVLEEGNESDQQKIQFAAGLKLVQKDSTPIECQALSKIELSYIEKCKAMVSMFHTLQCACHNVQHKTVRNLLSHLRELRIWFPLFTCYSCMISFTDRSTFTKHYTKCPKNQLETLIKLSNLKKRSEMKTRLYQNYKCNRCRFLYSFYDDYCKHIEEEHAAGEPPFYCSCRFVFDTLEEYKSHCYNSCVLSYYCDICFITTANLDEFVKHCQEQHDQSEGFVLLQEDGYSPRKSFQPKEADEEVNLVEGKRERRRSIKPPVFDDMFDDEVDKEVPPDPKNIPAKIIATKILNMDGLKTAADWRNPASCPTCLKDYSSVHNMVRHYKTHIERNEVVIPPHVLKECHTAENSTLYSCPDCGGMYNSVDWTQHLEESHPSMPCEDCDEVFKFQSELEQHRTDQHQEKGYGDVEVHPYRRRLLNPGPKIENITDGVMVMCDLCDTMFKTKEDLKSHKLLYHQPSSNMSQSGSSVNGDGFEAEEDDDNMPILDNEEEEEEDVKSEFMDKYVCDQCDRVYASVKTLKEHMKNKHGTLYVQKNEFPKKCDYCDKMCTTGSALYLHTQMHERMTLSDLREDKTAIGKARKKSELEETFETEEESYHMCKYCFKVFGTKGRLLHHMKCHGVSTIKRTRKHLCDLCHTSLDSKEELEKHKAEEHADELDDMPQLVNQMEVEVEIKQEVEEPKFEIPKIKPPPVLCKHCLLTFTSVGDLTKHMREEHSPKPRVVKEKRKDSVEKNVKCPLCKKAFASVGAMTAHAGWHKRAGSRLENPEANSPQAIAALKLARQSRVFKKAPPPKPQPPKFQCTTCFAQLPNDTALQIHILEKHRNVAEVMLVPRCNTCNKDFASQAEYETHKRFHEFLERQKKHGNPSPPVKKNPCNYCSSRFTRTDTLAAHIRQHHPEHVKTEFRCNQCDRVFEKQNSLTIHLKVHEKQKNGGVVVGGGGGGGGGVGGGGGAPSAKVYLCPICNMTFNFTKDLRMHTIKAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -