Csor026546.1
Basic Information
- Insect
- Cosmopolites sordidus
- Gene Symbol
- -
- Assembly
- GCA_031761425.1
- Location
- JARFXV010000808.1:18225-23976[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0001 0.02 16.8 3.0 1 23 121 143 121 143 0.98 2 16 0.00034 0.066 15.2 1.9 1 23 149 171 149 171 0.98 3 16 5.3e-06 0.001 20.8 1.7 1 23 177 199 177 199 0.98 4 16 0.00018 0.034 16.1 1.8 1 23 205 228 205 228 0.97 5 16 0.00037 0.071 15.1 0.5 1 23 234 257 234 257 0.91 6 16 0.011 2.1 10.4 0.8 2 23 262 282 261 282 0.96 7 16 0.75 1.4e+02 4.7 3.4 1 11 292 302 292 305 0.91 8 16 0.72 1.4e+02 4.7 0.3 1 23 470 494 470 494 0.69 9 16 1.1e-05 0.0021 19.9 3.9 1 23 500 522 500 522 0.97 10 16 6.8e-06 0.0013 20.5 2.8 1 23 528 550 528 550 0.99 11 16 4.2e-07 8.1e-05 24.3 0.0 1 23 557 580 557 580 0.98 12 16 0.066 13 8.0 0.2 1 23 586 609 586 609 0.93 13 16 0.52 1e+02 5.1 2.7 2 23 614 634 614 634 0.92 14 16 3.2e-05 0.0062 18.4 1.8 1 23 644 666 644 666 0.95 15 16 1.1e-06 0.00022 23.0 0.6 1 23 672 694 672 694 0.96 16 16 0.0026 0.51 12.4 8.4 1 23 700 723 700 723 0.97
Sequence Information
- Coding Sequence
- ATGGAATGCcgaatttgtttaaaatctCAGGAGACTAATTACATCTGTatttataaagaattaaatacaGCAGTAACCATTTTGCAAGGAATCATTAACTGTTCTTCAATTAAGATATTAGAAGGTGATCTTTTGCCAAAAGGGATATGTAATGAATGTTTAAATAAACTAACCTTATTCTATGAATTTCGCCAATTGATATTAAAATCTGATGAAACTTTAAAGTCAGTATTATACAGTcaaaatagtaataaatataGTTATGATACCCAAGACAATACGGCAGATTTAAAAGTAATGTGCCAGAATGGCAGTGATAACTCATCTAAGAAATCAAACTCTGGCAGAACAAAAAAGATATATGAATGTAAAGAATGCAATACAACATATGACAAAGCTGACCATTATAAAGTTCACATGACTAAACATACAGGAGTAAAGAAATTTGTTTGTGAGTTCTGTCCGAAAAGATTTGCCAGACACTATGTCTTAGTCTATCATAGAAGAATTCATACTAAAGAAAAACCATATAAATGTGATATCTGTTTGAAAACTTTCAGATCACCCAGCAACTTTTATGTGCacaaaaagatccatacagATGAAAAAAACCACAAATGTAATGAATGCAATGAATCATTTCTTCAATTAGAATCATTAAAAATTCACCAGAGAAGAGTTCATACAGGTGAAAAACCGTTTCTGTGTGAAATTTGCAGTAGTAGTTTTAGAAGCAAAAGTTCTTTACTAAGTCATCAATTGGATGTTCATGGAAAGAAAAGCTCTTGTCCACAATGCAACAAATTTTATAGTGCTCGAGTATTAAAAACTCATATTCAGAGACACAAAGTGCAAAATTTAGGTATTAAGCATTTCACTTGTGACCAGTGTGGAAAGAACTTTACATGCTCTTCAAGGATTGCTTCTAAAATTAATCgagttaatattttatttaagtgttATTTGGAGAAAACAGTGTCTGATCTTATAATTGAATGCGCAACCATAAAGATTAATCAGAatgattttttgccaaaatatgTATGTGTTAACTGTTATAGACAACTGCTCGAGTTAAATCAGTTTAGGGAATTAATTATCAAATCAGATTTCCATTTAAACAAGAAATCTTTACCAGACAGCACAAATGTAGTTAGTTCAGATGACAAAAGTTTAGAATTAGAGATTGAAAATTGTGATGATGCAGCAAGtgaagaatttttagaaaaagttGAGGTCTttataaaagaagaaacaaTTAGTGATATTGTAAATAGCAGTGATAAAGAAACTGACTTAGGTGATAATGTGATCAACAAAAATAGTTTAACAGAAACTAAACAAATTGTTTCAAGACCTGGTAGAAAACCCTCAAATAATTGTAAAGAGAAACGCAAGATTCATGAATTTAAATGTAACCTGTGTCAGAAAATACTTTATGGAAGATCAAATCGTTTGAAGGAACACATTTTAATGGCACATTCAGATATAAAGAATCACTCTTGTGAAATTtgtcaaaagaaatttaaaagtaaACAGCAGCTGGTAAATCACAGAAGGATTCATACTGGTGAAAAACCTTATCAGTGTGAATATTGCAGTGAAAGATTTACATCCCCACAGAATCTTTTTAATCATAAGAAAAAGCACACAGGTGATTACAAAAGTTACAAATGCAATGACTGTGATAAAGGTTATCCAACACCTGGAGAATTGGAAACACATATTAGAATTGCTCATACAGGAGAGAGGCcatttttatgtgaaatatgTAGCAGAGCATATAGTAGTATAAGAAATTTAGGATTCCATATTCGTTCTGTTCATGAAAAGAacgaaaaatgtcaaaaatgtgGGTTGATGTTTAGCATTAAAAGAATGAAGCAACATTTACAAAAACACAGAGACAGAGAGGAGGGTATTCGAAGATTTACATGTGATAAATGtggaaaaggatttttttcatctCATGCCTTGAAAAAGCATGAGGTTGTTCACACTGGTGAGAAACCATATTTATGTCAGATATGTCAGAAACCATTTAGTCAGAAATCATCAGTTGAAACGCATATGAGGGTACACAGTGATATTCGAAGTTTCTCATGTCAGTTCTGTACCAAAACCTTCAAATACAAACAGCATTTTCAGCTGCACCTAAAGAAGAAACACGAGGGTATAGAtgtaaaaacagaaataaattccctataa
- Protein Sequence
- MECRICLKSQETNYICIYKELNTAVTILQGIINCSSIKILEGDLLPKGICNECLNKLTLFYEFRQLILKSDETLKSVLYSQNSNKYSYDTQDNTADLKVMCQNGSDNSSKKSNSGRTKKIYECKECNTTYDKADHYKVHMTKHTGVKKFVCEFCPKRFARHYVLVYHRRIHTKEKPYKCDICLKTFRSPSNFYVHKKIHTDEKNHKCNECNESFLQLESLKIHQRRVHTGEKPFLCEICSSSFRSKSSLLSHQLDVHGKKSSCPQCNKFYSARVLKTHIQRHKVQNLGIKHFTCDQCGKNFTCSSRIASKINRVNILFKCYLEKTVSDLIIECATIKINQNDFLPKYVCVNCYRQLLELNQFRELIIKSDFHLNKKSLPDSTNVVSSDDKSLELEIENCDDAASEEFLEKVEVFIKEETISDIVNSSDKETDLGDNVINKNSLTETKQIVSRPGRKPSNNCKEKRKIHEFKCNLCQKILYGRSNRLKEHILMAHSDIKNHSCEICQKKFKSKQQLVNHRRIHTGEKPYQCEYCSERFTSPQNLFNHKKKHTGDYKSYKCNDCDKGYPTPGELETHIRIAHTGERPFLCEICSRAYSSIRNLGFHIRSVHEKNEKCQKCGLMFSIKRMKQHLQKHRDREEGIRRFTCDKCGKGFFSSHALKKHEVVHTGEKPYLCQICQKPFSQKSSVETHMRVHSDIRSFSCQFCTKTFKYKQHFQLHLKKKHEGIDVKTEINSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -