Csor040414.1
Basic Information
- Insect
- Cosmopolites sordidus
- Gene Symbol
- -
- Assembly
- GCA_031761425.1
- Location
- JARFXV010001526.1:22149-38912[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.082 16 7.7 1.1 3 21 8 27 6 28 0.86 2 15 1.4 2.7e+02 3.8 0.1 3 20 35 52 34 54 0.94 3 15 0.28 55 6.0 0.4 1 12 124 135 124 144 0.87 4 15 0.72 1.4e+02 4.7 4.0 1 20 250 269 250 271 0.93 5 15 0.00073 0.14 14.1 0.2 1 23 281 303 281 303 0.98 6 15 0.00072 0.14 14.1 2.7 1 23 322 344 322 344 0.97 7 15 0.027 5.2 9.2 0.8 1 23 377 398 377 398 0.96 8 15 3.3e-05 0.0064 18.4 0.5 3 23 406 426 405 426 0.96 9 15 0.00022 0.042 15.8 0.3 1 20 432 451 432 452 0.94 10 15 2.8e-05 0.0055 18.6 1.5 1 23 460 482 460 482 0.98 11 15 1.3e-06 0.00025 22.8 3.5 1 23 488 510 488 510 0.98 12 15 8.7e-05 0.017 17.0 8.6 1 23 516 538 516 538 0.99 13 15 2e-06 0.00039 22.2 0.2 1 23 544 566 544 566 0.98 14 15 1.5e-05 0.0029 19.4 0.2 1 23 570 592 570 592 0.98 15 15 0.00017 0.033 16.1 0.1 1 23 600 623 600 623 0.96
Sequence Information
- Coding Sequence
- ATGGCGCCATTAGCTCTAACTTGTCCATTATGTTGCAATGAAACTTTTTCGTCCCATGTTTCCTTAAAATATCATATCTTAAGTATGATAGATAATTTGTTGTGCCCCTCTTGTAACGAACGTTGTGACGACTTAATGGATCTAGCAGATCATCTTGGACGAGAATGTGCCAACTTAGAAAATTCCAATGAACAGGAGAATAGCTCTACTGTAACCCAACCCAGCAAAGATGGTGATAATTCGCAAAATAGTTCCGATAATCAAGTATTTGCAGAACACACTATAAAAAAGGAAGTCGACGACACATATACCGAAAATCAGATAGATATTTTAGATGATGAAAACAGCCAGAGTGATTCTAATTTGTTGTATACTTGTCAAATGTGTAATATAAGTTTTAATTCAGTCAAAGATCATCTGGCTAAATATCATGAAGGAGAAGAGGTTTTATTAGAAACAGATACTCAAGATGGCATAGAAGATGAACAGGACAATATGTTAGTTTACAAAGATGATGATCAACAAAATATGGAAGATTCAGTAAGTAGATCACAAAGTAATGATACTGCATCAGAAGAAGAAATGCTAGGTGATGATGATGCATCTTATCACAAAGACTCAACTGTGTCTGGAAGTGAAAACTTAAATCCTATAACCACAAAATACATTGTTGATAATGGGAAggtaagaaaaataacagaagaagaagaagcccAACTGGAAGACAAATCTTCAATTATTGAAGTACACAGTTGTCCAAATTGTACTTTACAGTTTCCAAATATAAACCATTTCCTTAAACATAAATGTGATAATTTTCAGGTTAAAGAAGAACTGAGATATCAATGCACATTTTGTCAAGCGATTTACTCTAATTTGATAGCCTTAAATGATCACATGAAGGCTCATTTAGTTCATGATAATACAGGTAtggtttataaaaaaactattactaTGTCGTTGCATGAATGCGAGGTTTGCAACACAAAGTTTCCTTCATTTAAACAGTTGAGATTGCATAGCAGAATGCATGAACCAGTGAAAACGAAAAAGatagAACCACCTGTTTTGTATAACATTATGGGTGAGGAGGATGGTGAGGCATCAAATAACACTGAGAGAGAGGTATTCCAGTGTTCGGTTTGTCAGAAAGTTTATGACAAAGGGTACGAAACAGTACATATGAAATCACATGAAGAACAAGAAATTAACATTTGTTATGTTTGTAATAGAAAGTTTGACAGCAAGGAAAACTTGGAGATGCATATGAAAGctcATTCTGATACAAAAAAGTTTGCATGCTCTTATTGTAAGAAACCCTTCACCACCTACAAGGCTTTGGAGAATCATGTAGTAAATCAATGTCAAAAAAGGCAGTATGAATGTCAATATTGTGGAAGGCGTTTTGCGAGGCCCCATGAAAAGGTGAAACATGAAAGAATTCATACCGGGGAAAAACCGCATGTTTGTCAAATTTGCGGTAAAGCCTTTAGAGTCAGCTACTGTTTGACGTTGCATATGCGGACTCATTCTGGAACACGACCTTATTCTTGTTCACACTGTGGAAAAAGATTTAAGTCCCACAGTGTTTACAACCACCACATGCTAACCCATTCCGATGAACGCAACTATAAATGTCCCTATTGTCCAAAAGCTTTCAAAACTGCTGTACAGCTAGCAGGACATAAAAACAGTCACACCAAACCGTTCTCCTGCAAGGAATGCAACAGACCTTTTGCCTCGCTGTACGCTGTACGAGCTCACATGGAAACCCACAAGCGAGACAACAATTTGAGATTCGACTGTTGGGTTTGCGGGGCCAGTTATGCCAGATCGTTTGCGTTGAGGGACCACATGAGTTCAGTACATGGTGGAGAAGGAGATTTGATCGATAACGATCAAGAGGAAGCAACCATGGACGGTGCAGATTCCCAACAGGACGAGAAGGAGACTACCGAGAATGAGCAGGTTGAGGAGCATGACATCCAGTTTGTGGCCGTGGATGAGCATAGAGAAACAGtAGAAGGTCAAACCGAATGCCAGTTAGTTACAACTGAAGAAGGAAGCCAGGAATACGTGGTAGTACAAATGGAGCAAGAATCAGCTGAAGACCCAGCggattaa
- Protein Sequence
- MAPLALTCPLCCNETFSSHVSLKYHILSMIDNLLCPSCNERCDDLMDLADHLGRECANLENSNEQENSSTVTQPSKDGDNSQNSSDNQVFAEHTIKKEVDDTYTENQIDILDDENSQSDSNLLYTCQMCNISFNSVKDHLAKYHEGEEVLLETDTQDGIEDEQDNMLVYKDDDQQNMEDSVSRSQSNDTASEEEMLGDDDASYHKDSTVSGSENLNPITTKYIVDNGKVRKITEEEEAQLEDKSSIIEVHSCPNCTLQFPNINHFLKHKCDNFQVKEELRYQCTFCQAIYSNLIALNDHMKAHLVHDNTGMVYKKTITMSLHECEVCNTKFPSFKQLRLHSRMHEPVKTKKIEPPVLYNIMGEEDGEASNNTEREVFQCSVCQKVYDKGYETVHMKSHEEQEINICYVCNRKFDSKENLEMHMKAHSDTKKFACSYCKKPFTTYKALENHVVNQCQKRQYECQYCGRRFARPHEKVKHERIHTGEKPHVCQICGKAFRVSYCLTLHMRTHSGTRPYSCSHCGKRFKSHSVYNHHMLTHSDERNYKCPYCPKAFKTAVQLAGHKNSHTKPFSCKECNRPFASLYAVRAHMETHKRDNNLRFDCWVCGASYARSFALRDHMSSVHGGEGDLIDNDQEEATMDGADSQQDEKETTENEQVEEHDIQFVAVDEHRETVEGQTECQLVTTEEGSQEYVVVQMEQESAEDPAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -