Csor029469.1
Basic Information
- Insect
- Cosmopolites sordidus
- Gene Symbol
- ECU03_0790
- Assembly
- GCA_031761425.1
- Location
- JARFXV010000918.1:99908-102065[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00067 0.13 14.2 4.6 1 23 43 65 43 65 0.97 2 13 0.00012 0.023 16.6 1.9 2 23 72 94 71 94 0.97 3 13 0.00035 0.068 15.1 1.6 1 23 100 122 100 122 0.98 4 13 4.3e-05 0.0084 18.0 0.4 2 23 129 150 128 150 0.97 5 13 0.00061 0.12 14.4 3.4 2 23 157 179 156 179 0.94 6 13 0.00096 0.19 13.7 2.8 2 23 187 208 186 208 0.97 7 13 0.00096 0.19 13.7 1.1 3 23 216 237 214 237 0.96 8 13 8.7e-05 0.017 17.0 0.2 1 23 242 264 242 264 0.96 9 13 0.015 2.9 10.0 0.9 2 23 275 294 275 294 0.90 10 13 2.8e-05 0.0053 18.6 1.2 1 23 301 323 301 323 0.98 11 13 1.1e-05 0.0021 19.9 2.9 1 23 329 351 329 351 0.99 12 13 3.1e-07 6.1e-05 24.7 1.1 1 23 359 381 359 381 0.98 13 13 3.1e-05 0.0059 18.5 1.6 1 23 387 410 387 410 0.97
Sequence Information
- Coding Sequence
- atgcgtgtactattgaactgtaacaGagATCTGTTAGATGAATTAAATGACGAAACTAATCCTGCCAAAACTAACAACTCCGAGCAAGAAGAAAATGGAATTCCTATATTAAAAACATCAGCAGGATATCAGTGTCAATACTGCGACCGAATCTTTCAGCAACGTTGTAAattaaagaatcattttattgTTCACAGTTCGGATCGTCCGTGGAAATGCGACGTTTGCGAGAAAACTTTCAAACACAAACGAGTGTTGGACTATCACATTAAAACTGTACACGGTGAATCAGAGAATTTTCCTTGCGATGTGTGCGGAAAAATTTTCGGGAATAAAAGAAACTGTATAGTGCATCGGAAAAGACACGGTAAAGAATACAGTATAAAGTGCGAAATATGCGACAAAGGatttttgagtaatttttatCTGAAGAAACACATGATTGTGCATAGTGACGAAAGACCTTTGAAATGTTCCTTCTGTAATAAGACGTTCAAACATCAACGGGTACTCAGTTATCATATCAAAGCCCTCCATCTGAACACCAACGAAAAAATAACCTGTGATATTTGTGGAAAACTCTTCACGACTAAGAGAAATTGTGCCGTTCACCGAAAGCGACATTTGAAAGAATACACGATATTCTGCGAGTTTTGCGGAAAAGGATTTCTGAACAATTTTTACTTACAGAAACATCTCAACTCGAAACATTACGGCAAGCGTCACATTTGTGACGTTTGTGGTGCCAGTATTGGGGATAAAGGAAATTTACGCAACCATATGAAACTCCACGATCCTAATTACAAACGACCACCGCCAGAAAAGTGTCAACTTTGCAACAAAGCCTTCTCCGACTTGAAGAGACATTACAAGGCAGCTCATGAAAACGACGGGAAAAACTACAAATGCGAATATTGTGGGAAATTTTTCCGAGGGAAAGACGGTCTGAAGTTTCACCTGATGATTCATCGAGGTGAAAAACCATTCCAGTGTCAATTTTGTGATAAAAGTTTCATTTTGAATACGTTCTTGAGGCAGCATCTGCGAACACATCCGGAGAGCAACGTAAAACCGTTTGAATGTCCGTATTGCGGGAAAACGTTCATTAAGAAAAGTCTGTTGGATCATCACGTGAATATTCACACTGGCGAACGACCGTTTGAGTGTGAATTTTGTAGGAAAACTTTCACAGGAAGAAAATATCTCACTGCTCATATTAGTAGTCAACATTCAGCGGAACGCTACTGA
- Protein Sequence
- MRVLLNCNRDLLDELNDETNPAKTNNSEQEENGIPILKTSAGYQCQYCDRIFQQRCKLKNHFIVHSSDRPWKCDVCEKTFKHKRVLDYHIKTVHGESENFPCDVCGKIFGNKRNCIVHRKRHGKEYSIKCEICDKGFLSNFYLKKHMIVHSDERPLKCSFCNKTFKHQRVLSYHIKALHLNTNEKITCDICGKLFTTKRNCAVHRKRHLKEYTIFCEFCGKGFLNNFYLQKHLNSKHYGKRHICDVCGASIGDKGNLRNHMKLHDPNYKRPPPEKCQLCNKAFSDLKRHYKAAHENDGKNYKCEYCGKFFRGKDGLKFHLMIHRGEKPFQCQFCDKSFILNTFLRQHLRTHPESNVKPFECPYCGKTFIKKSLLDHHVNIHTGERPFECEFCRKTFTGRKYLTAHISSQHSAERY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01307423; iTF_01244454; iTF_00196586; iTF_01188600;
- 90% Identity
- -
- 80% Identity
- -