Csor029468.1
Basic Information
- Insect
- Cosmopolites sordidus
- Gene Symbol
- -
- Assembly
- GCA_031761425.1
- Location
- JARFXV010000918.1:84371-94691[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.089 17 7.6 0.6 1 23 120 143 120 143 0.92 2 15 0.13 25 7.0 1.5 1 20 196 215 196 217 0.94 3 15 0.0032 0.63 12.1 0.4 1 23 223 245 223 245 0.96 4 15 0.0026 0.51 12.4 1.8 1 23 255 278 255 278 0.96 5 15 0.047 9.1 8.4 0.3 1 23 328 350 328 350 0.95 6 15 9.6e-05 0.019 16.9 5.2 1 23 968 990 968 990 0.99 7 15 0.00011 0.022 16.6 0.1 2 23 997 1018 996 1018 0.97 8 15 9.5e-05 0.018 16.9 6.1 1 23 1023 1045 1023 1045 0.99 9 15 0.043 8.3 8.5 1.6 3 23 1053 1074 1052 1074 0.97 10 15 0.0054 1.1 11.4 0.1 3 23 1081 1101 1080 1101 0.97 11 15 4.4e-06 0.00085 21.1 1.2 1 23 1111 1133 1111 1133 0.96 12 15 1.2e-05 0.0024 19.7 0.4 1 23 1139 1161 1139 1161 0.98 13 15 2.1e-07 4e-05 25.3 0.2 3 23 1169 1189 1167 1189 0.97 14 15 8e-07 0.00015 23.4 4.1 1 23 1195 1217 1195 1217 0.98 15 15 3.9e-05 0.0075 18.1 3.2 5 23 1226 1244 1223 1244 0.95
Sequence Information
- Coding Sequence
- ATGATTAGAGTACATAATGCATTATACCTCCCAACTTTGACATATGGTTCCGAAATGTGGAAGCTAAATGAACATCAGAGAGGAAGAATACAGGTCTGTGAGATGAGAGTATTGAGAAGAAAAGGACGGAAAAAGAAGGAAATTAGGAAAAGATTGGGGGAAAAATCTGTAGAAGAAAGGATAAGGGAAAATACACTGCGATGGTTTCATCTCTGGAGCAAAGAAGAACAACAAAAATACATTGCTCTTcatttcaataaacaatgtCGAGTTCTTCTAACGGACGTAGTAAATACCGATGAATATAAGAAATTTGTAATCAAGAGCAGAAAGCATCAAGATACTGGAAGGAGAAGATTTATTTGCTACATTTGCTTTAGCAAATTTTTCGATAAGACAGATTTGGAAGCTCACAAGGCATACGCCCATCGAGAAGACCGTGATATTTCAAGCGCTGAGAGCAGCTCTGAATCATTTGATGATATCGAGGAAATCGAATCTGATTCAGATGATTCCGATGCTGAGACAAAAAAGAATGACAATGAACAGGAACGACTGAAGGAAGACGTTTCTAATCAGAACAAGTACAAATGTATGACTTGTAATGTGTTTTTTGTCGATCAGCGTGAAGTTAATACTCATCACCACGTGCAAAATTCgtgcaaatatttttgtgttaAGTGTGGTAGACAGTTTAATACAAGAGGTGGATTTGTAGTACACGTGTTGCAACACGACATTAAAGCTTGCACGAAATTTTCTTATAAATGCGCAATCTGCTCGGACTCTTTTGATGATTGTTATCAGTTGAAGAGACATTACGCTTCTGTTCACGACGTTCTAACTAAAATCGGAACTCCTTCGAAATCAACAACAGAAACATCTTCAACAAGCGGGGTTTCAACTTCTTCAAATCCCAGTACTAGCACTAGAGCTACTGCGTCAAGGAAGCCCCCACTGATTTTGCCGAAAATTACTGTGTTTGACTGTGACGTCTGCTATGATGTGTTTAATACAAATGAAGCCCTGTCCAAACACAAAGAATTGCACAAGGTACTGCAAGAGAAAACGGCAAAAGTTCGGGCTAAGGCGGCTTTGAAATTAAAGGAGCGTCGCATCATCGTGCAAAACGATAGTAAAATGACTTCGAACAAAGTGGTATCTAACTTCACCATTAAGACCAAGCCCGCGGAAGGGGCCAGTCCGCCTGTACAATTGTTTCTTCGATCGGTTAAGTCAAAAACTGGGCTTCCTCATTTGGTACCAACTTCTCAACAGGCCGAAACTAAAACAAGGGGAAACGTCGCTACTGTCACTAGCAAAGCTGTGACTGGTCGAACGAGAACTAAAAATTTCAAGTACACCAAAAACATGCATCCTACAAATAGCATTACAACGACAATCAATGCTTTATCAACTCCACAAACGTCAGTTGGTGCTGTACCCACTACTAAATCTCAAGTCCCGTTTGTGATTAACTCATCAATCAATGCTTCATCAACTCCACAAACGTCAGTTGGTGCTGTACCCACTGCTAACTCTCAAGTCCCATTTGTGATTAACTCATCAATCAATGCATTATCAACTCCACAAACATCAGTTGGTGCTGTATCCACCACTAAACCTCAGGCTCCGTTTGTGATTAACTCGTCAATCAGTGCTATATCGACTCCGCAAGCGTCAGTTGGTGCTGTATCCATTGCTAAACCTCAGGCTCCGTTCGTGATTAACTCGTCAATCAATCCTTTATCAACTTCACAAGCGTCAGTTGGTGCAGCTGCTACCACTGAATCTCAAGCTCCGTTTGTAATGAACTCGTCAGTCACCACCACTGAACCTCAATCTCAGTTTGGATTAATCAATCCACAAATTAATACTGGTTCGGTTATGCTTAATCCTCAGCAGCCAGACCCATCAGCCAATAGTCTGCTTATTAACAGACCGGATAGTACTCCTATCTTTTATATAGTATTACCACCCAATTCTGGCGATGTAGGGGTTGAAAATTCACCAATTGCCGAAAGTTCCAACTCAAGTGTGACTGTCACGCCGGAAACTCAGAAAGGTTCTACTTCCAGGAATCCCGATCAACAAAAACCAGTAGTTGGTTTTAGTATGCCGTTGATTACTAATGTGGGAACGGTTGTAGAAGATTCTTGTAATCTTAATGAGAAAATGAACAGTGCACCGACCTCGCAGTTTGAGGGAGAGTTTGCGAAATTTTTGGAACAAGTTAATTCAGCTAGCcagaaaaatagatttattttacCCAAACCGTCAACGCCTGAACTACAAACTAATTCTACCTCTCAATCTGCTGATATTATTGTTATTGATGAAGATTCGGAAAATGAAGATGATGATGCTGTCACATTTACAGTTAATGTCGGTCCCAGTACAGATTCGACCACAACTAATACTGAGGGAAGTAATATTTGTACAGTGACATCTGTGGTTGCTTCCACCAGCAGTGCTACACCTGACAAAATTAGTGAAAATAAGCCAAAAATTTACGTTAAAAAACTCAGTGAACTAATCGATAAGCctaagacaatattaaatttatcgTTGCCAGTTCCTCAGATGCAACTGGACCAACTGCTATGTCCCTTGCTCTACAACGACCAACtctatttaaactttaatatggTCACGTTACCGAACAACCTGAACTTGATGGAAAACTTTGACTGTCAAAAATCGGAAAATATTCCCGCCAGTTCTGTGGTCGATCAACTCAATGCAACTGACGATCTGTTGAATCTTTTATCGACCGAAGAAGAATGCACTGCTATCTTAAATAACATAGCTACTAATGAGCAATTTCAACGATTGATGGACAATGATCAGGCGTTTGCCGTGAATAACGAGGGTGTGGGAAATGGAGTGAAGCAGATTGGTTTTAAATGCGATATTTGCAAGAGGATTTGTACGACGAAgaaactgttaaaaaaacaCTTGATGCGTCACACTGAAGATCGGAAGATACCCTGTAAAATATGCGGGAAACTATTCAGATATAATTATGAAGTAACCGCGCATGCTCGGTCTCACGAAAAGCCGTCCTTTCAGTGTGATATGTGCACGAAACTATTTGTTCACAAGTCACACCTCAATGCTCATCGCAAACGACACTTGGCCGAATATGTCGCCTTTTGCGATGTGTGTAATAAAGGCTTCATCTCTCAGGCTGAATGTACCAATCATAAGAATACGATACACGAAAATCTCGGTCGGATTTGTGAAACGTGTGGTTTGAAATTGAGCAGTCTCTCCGCATTAAAAGAACACCGATTAATTCATGATCCTCATCACGGGCAAACTCGAGATCACATTTGTGACATTTGCGGTAAAAGTTACATGACCAAACGCAACTTGAAAAGTCACATGGTGGTTCATTCGCGAAGCAAGCCTTACGTATGTAGAATCTGCGGTAAAACAGTGAGCAGCAAAAATACTTTGGAAACTCATGTAAAAATGCATACAGGGGTTAAAGATATCATTTGTGAAATATGCGACAAGAGTTTTGCTTCGAAAGAGTATCTCCAAGTACATCAAAGGACTCACACTGGGCACAAACCGTTTCAATGTCACATTTGTCCGAAAAAGTTCACTCAGAAAACCTCTCTGACTGTCCATTTAAGATACCACACTGGTGAGAAACCGTACAAGTGCGAGTGTGGAAAAAATTTTACTACCAAAAGTCATCTCATGGCGCATTATAAAACTCATGATGTAGGTGGGGTTGAAATCGATTATCTAGCTTATCATTTACACGATTCATTAAAACCATGTTAA
- Protein Sequence
- MIRVHNALYLPTLTYGSEMWKLNEHQRGRIQVCEMRVLRRKGRKKKEIRKRLGEKSVEERIRENTLRWFHLWSKEEQQKYIALHFNKQCRVLLTDVVNTDEYKKFVIKSRKHQDTGRRRFICYICFSKFFDKTDLEAHKAYAHREDRDISSAESSSESFDDIEEIESDSDDSDAETKKNDNEQERLKEDVSNQNKYKCMTCNVFFVDQREVNTHHHVQNSCKYFCVKCGRQFNTRGGFVVHVLQHDIKACTKFSYKCAICSDSFDDCYQLKRHYASVHDVLTKIGTPSKSTTETSSTSGVSTSSNPSTSTRATASRKPPLILPKITVFDCDVCYDVFNTNEALSKHKELHKVLQEKTAKVRAKAALKLKERRIIVQNDSKMTSNKVVSNFTIKTKPAEGASPPVQLFLRSVKSKTGLPHLVPTSQQAETKTRGNVATVTSKAVTGRTRTKNFKYTKNMHPTNSITTTINALSTPQTSVGAVPTTKSQVPFVINSSINASSTPQTSVGAVPTANSQVPFVINSSINALSTPQTSVGAVSTTKPQAPFVINSSISAISTPQASVGAVSIAKPQAPFVINSSINPLSTSQASVGAAATTESQAPFVMNSSVTTTEPQSQFGLINPQINTGSVMLNPQQPDPSANSLLINRPDSTPIFYIVLPPNSGDVGVENSPIAESSNSSVTVTPETQKGSTSRNPDQQKPVVGFSMPLITNVGTVVEDSCNLNEKMNSAPTSQFEGEFAKFLEQVNSASQKNRFILPKPSTPELQTNSTSQSADIIVIDEDSENEDDDAVTFTVNVGPSTDSTTTNTEGSNICTVTSVVASTSSATPDKISENKPKIYVKKLSELIDKPKTILNLSLPVPQMQLDQLLCPLLYNDQLYLNFNMVTLPNNLNLMENFDCQKSENIPASSVVDQLNATDDLLNLLSTEEECTAILNNIATNEQFQRLMDNDQAFAVNNEGVGNGVKQIGFKCDICKRICTTKKLLKKHLMRHTEDRKIPCKICGKLFRYNYEVTAHARSHEKPSFQCDMCTKLFVHKSHLNAHRKRHLAEYVAFCDVCNKGFISQAECTNHKNTIHENLGRICETCGLKLSSLSALKEHRLIHDPHHGQTRDHICDICGKSYMTKRNLKSHMVVHSRSKPYVCRICGKTVSSKNTLETHVKMHTGVKDIICEICDKSFASKEYLQVHQRTHTGHKPFQCHICPKKFTQKTSLTVHLRYHTGEKPYKCECGKNFTTKSHLMAHYKTHDVGGVEIDYLAYHLHDSLKPC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -