Csor041388.1
Basic Information
- Insect
- Cosmopolites sordidus
- Gene Symbol
- -
- Assembly
- GCA_031761425.1
- Location
- JARFXV010001587.1:536743-542316[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0011 0.21 13.6 0.1 1 23 298 320 298 320 0.94 2 12 1.6e-05 0.003 19.4 1.6 1 23 328 350 328 350 0.99 3 12 1.2e-05 0.0023 19.8 0.5 2 23 358 379 357 379 0.97 4 12 6.4e-06 0.0012 20.6 0.8 1 23 385 407 385 407 0.98 5 12 4.2e-06 0.00082 21.2 1.6 1 23 414 436 414 436 0.99 6 12 0.00024 0.047 15.6 0.5 1 23 442 464 442 464 0.94 7 12 3.3e-06 0.00063 21.5 0.2 1 23 470 492 470 492 0.98 8 12 7.2e-07 0.00014 23.6 1.2 1 23 498 521 498 521 0.96 9 12 3.8e-06 0.00073 21.3 2.3 1 23 527 550 527 550 0.96 10 12 9.7e-06 0.0019 20.0 2.0 1 23 556 578 556 578 0.99 11 12 0.00011 0.021 16.7 0.4 1 23 584 606 584 606 0.94 12 12 0.0015 0.28 13.2 0.1 1 23 612 636 612 636 0.92
Sequence Information
- Coding Sequence
- ATGACGGCAAGTGCCAACACAAGTATTTGTCTTATATGCAATGCAAGTTGTTCCTCTAGCagaaatacatttcaaatatttaacaaaGATCCTTCAGTTCCTAGTGAAATAAACATCCCCACAATCTTAcaacaaattttagaaaaagaaatcaaacaagATAACATACATTCAGATATATTATGTAAAAAGTGTTTTAAACTCATTGATGAATATGATGAAGTAAGAAATAGAATGTCCGAAATCAGTAGAGAACTACAAGATAATTATAAAGCCAATTTAGAAACCAGACAAAATGAACAGATTGAAGACCATCAGACAGGGAAGCTTCAAGAGACATGCAGCAGGCAAAGTAATGAATTGCCTaagaaaattttagatattccTTCAAGTGATGAAGAATCTGGACATGTGATAGAAAAACCTCTAGAATCCCTGGATGATATTGAAATGGCTTTGGTAAAGATGCATGGAGGATCAATGGAGGATATTGAAGGTGAAGGACAGGCCTTTCATGCTTTAGTTGGGTCAGATTGTGAGGAATTAGAAGTAAATCCAGATATTCcagagaaaataaaaataatcaaaatagaACCAAATCAAAAAGATGAATCTTATGTTTCTGCTCAAAGCTCGTCAAGTATGGCAGATGGAAATAAACccaatatattaaagaaaaggGCATCTTTAAATGGTATAGCATATACTAACAACATTATTATACAACAATCTACCAATAAGTTTAAAAATACTGACGAGGAGTCTTCAAATCCTATTGTTAATAGGGATGGCAATATTTATACCTGCCTTTTGTGTCCTGATGATGAATCTATTTCTGGTGGAGCCAAGATGATAATTGCTCACATGAAAGAGGTACATGTTAGTCGTTTATATATTTGCGACGTGTGTGGAATGGATTTCCGGAAACGGAATCTACTCTCAGCTCACGTAGATGAACACGTCGCTAACGAAGAAGGAGACTTTCAATGCGAAGTATGCAACAGGATTTTTACCAATCTCCGTCTGTTCCGGATACATCGCAGgaTGCACTTACCTCCAGCTAAGGCGTGGTCGTGTTCAACTTGCGGCAAGAGGTTCAGCAGCAAGAACTTACTGGACGAACATATCAATATGCACTTGGGCGTCAGGCCGTACGTTTGCGGCACGTGCGGCAAGGATTTTGCCAGCAAATATACCTTTAAAGCCCACGAGAAGACTCACGAGAACAGACCAAGACCTTATCGATGCGAACAGTGTGGAAAATCATTCTTGAGTCAGCAAAATCTGACTCAACACGAGCGAACTCATTCCACTGTCAAAGAGTATCAGTGTCACCTTTGCGAAAAACAATTTGGATCGGCGAACAATCTCGAGGTACATTCTGTGGTTCATACCGGGTATAAGCCTTTCGTTTGCGGGCTGTGCGGAAAAACGTTCGCCAGGAAAGCGGAAGTGAAGGATCACGAGAGGACGCACACTGGAGAGAGACCTTACCAGTGCGAGTTTTGTGGGGCGACCTTTAGTCAAAGGTCCAATCTTCAGTCACACAAAAGAGCTACACATTATGATGACAAGAGATACAGATGTGAGGACTGTGGCAAATGCTTCAAACGTCGGAGATTGTTGGACTATCACATCAAAGCCGCCCACACTGGCGAACGTCCCTTTAAGTGTGAAATCTGCGAGGCCACCTTCGTTTATCCTGAGCACTTTAAAAAACACAGACGAATTCACACGGGAGAAAAACCGTTCTTGTGCGAGGTCTGCGGCAAAGCCTTCAATTCCAGAGACAATCGTAACGCCCACCGTTTCGTCCATTCAGACAAGAAACCTTACGAATGTCTTGTTTGCGGTGCCGGTTTCATGAGGAAACCACTTTTGTACCAGCACATGCAATCCCAAGGTCATCTGAACGATACCATAGTGGTCAATCAACCAAGACTGACCTTAGATGATAAACTATCAATCGGAGCTGAAACCCATCTGGTTAGGATGCAGGAAGATCAGGAGGTTAACGACTCGAAATTGTTCATCGCCGGTGAGGACGGATCAGAACACATCATCATCGACGGATGTCCTGTTGCCCTGGCTAGTTCGGAAAATGAAGACGAAGATGGTGAGGTGATCGACGAGATCGAGCAGATCGTCGGAGCCGAAGACGCAGACTACGATGAGATTCTGACCACAGAGGCCATTTCTAGCAGCGAGACGCAGATTATTCAAACTCCCGAAGGTCCCATCCAGCTGGTCAAAGTGAAAATACCACAAGAGAACGGCGAAGAAGAGGAAGCCTGGATCAAGATCATTCCTGAATAG
- Protein Sequence
- MTASANTSICLICNASCSSSRNTFQIFNKDPSVPSEINIPTILQQILEKEIKQDNIHSDILCKKCFKLIDEYDEVRNRMSEISRELQDNYKANLETRQNEQIEDHQTGKLQETCSRQSNELPKKILDIPSSDEESGHVIEKPLESLDDIEMALVKMHGGSMEDIEGEGQAFHALVGSDCEELEVNPDIPEKIKIIKIEPNQKDESYVSAQSSSSMADGNKPNILKKRASLNGIAYTNNIIIQQSTNKFKNTDEESSNPIVNRDGNIYTCLLCPDDESISGGAKMIIAHMKEVHVSRLYICDVCGMDFRKRNLLSAHVDEHVANEEGDFQCEVCNRIFTNLRLFRIHRRMHLPPAKAWSCSTCGKRFSSKNLLDEHINMHLGVRPYVCGTCGKDFASKYTFKAHEKTHENRPRPYRCEQCGKSFLSQQNLTQHERTHSTVKEYQCHLCEKQFGSANNLEVHSVVHTGYKPFVCGLCGKTFARKAEVKDHERTHTGERPYQCEFCGATFSQRSNLQSHKRATHYDDKRYRCEDCGKCFKRRRLLDYHIKAAHTGERPFKCEICEATFVYPEHFKKHRRIHTGEKPFLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGAGFMRKPLLYQHMQSQGHLNDTIVVNQPRLTLDDKLSIGAETHLVRMQEDQEVNDSKLFIAGEDGSEHIIIDGCPVALASSENEDEDGEVIDEIEQIVGAEDADYDEILTTEAISSSETQIIQTPEGPIQLVKVKIPQENGEEEEAWIKIIPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01307417;
- 90% Identity
- -
- 80% Identity
- -