Csor021117.1
Basic Information
- Insect
- Cosmopolites sordidus
- Gene Symbol
- ZNF711_1
- Assembly
- GCA_031761425.1
- Location
- JARFXV010000597.1:457592-471106[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2.1e-05 0.0041 19.0 0.3 2 23 186 207 185 207 0.98 2 20 0.00032 0.063 15.2 2.4 1 19 213 231 213 236 0.92 3 20 0.016 3.2 9.9 0.8 1 23 242 264 242 264 0.98 4 20 0.003 0.59 12.2 0.1 2 23 271 293 270 293 0.94 5 20 4.1e-05 0.0079 18.1 2.2 1 23 298 320 298 320 0.97 6 20 0.0083 1.6 10.8 2.6 2 23 331 353 330 353 0.95 7 20 6.7e-05 0.013 17.4 0.6 1 23 360 382 360 382 0.97 8 20 3e-05 0.0059 18.5 0.4 2 23 389 410 388 410 0.97 9 20 9e-08 1.7e-05 26.4 2.3 1 23 416 438 416 438 0.99 10 20 1.9 3.6e+02 3.4 0.3 1 11 444 454 444 455 0.92 11 20 0.018 3.6 9.7 0.2 3 20 580 597 578 599 0.94 12 20 1.7e-05 0.0034 19.2 0.8 2 23 612 634 612 634 0.96 13 20 0.98 1.9e+02 4.3 0.8 6 23 644 662 644 662 0.97 14 20 0.21 41 6.4 1.4 1 23 674 697 674 697 0.91 15 20 0.0012 0.22 13.5 2.0 1 23 703 725 703 725 0.96 16 20 0.00032 0.061 15.3 0.2 1 23 737 760 737 760 0.96 17 20 0.029 5.6 9.1 0.3 1 23 772 795 772 795 0.92 18 20 8.7e-05 0.017 17.0 3.1 1 23 801 823 801 823 0.92 19 20 1.7e-05 0.0032 19.3 0.9 1 23 829 852 829 852 0.97 20 20 0.013 2.5 10.2 5.1 2 23 860 882 859 882 0.94
Sequence Information
- Coding Sequence
- ATGCGGAAGGTGGCGAAAGAGCTCGGCGTTGATGAGAAAAGCATCCGTCACATCATTAGGAGGAAGCTGGGACTGCGCAGCTGCAAGATCGCTCGCGTCCATTTTCTCAACGACGTGCTGAAGACGAAACGACTCGAGAAATCTCGTCGGATGCTTCGTCGGCTCGGTGGTGCTCGCCTGTCGAACGTGCTCTTGACCGACGAGCCGCTCCACAATCGTCAGAATCGCCGTCAACTGCTCAGGAAAGGTCAGCAGAAGACCGCGGCTGCAAAAACCATCGGCCGCAACCATTTTACGGCCTCCGTCATGGTCTGGGCCGGGATGTGCGCTACCGGAGAGACGCCACTGTTCTTCATCGAGCGGATCGTCAAGATCAATGTTGCCAGCTACCAGCAGCGTGTTCTCCGCGACGTACTGGAGCCGTGGGCGGCGCAGCACTTTGGCTCAGCTGGATTCACGCTTCAgATAATAAAAGTCGAAATAAAGGAAGAAAAGTACGATTACGATTATCAAAACCCGAAAAGAACGAAAAAATCTCTCAGGaacaaagaaaaacaatgtCCGATCTGTCCGAAAATCCTAAAAGACAATTGGTATCTGAAAAAACATTTACTCACTCATTCGGAGGAACGGCCGCATCCTTGTCCGAAGTGCGACAAGAAATTCAAAACTCAGTATCAAGTAAAAACACATGATTTACGTATGCACGGTGAACAGCAGTACTTTGAGTGCGATTTCTGTACGGCGAAACTGAGGTCGAAAGGTTCTTGGATGATACACAGGAGAAGACATCTCAAAGAATATGTTGTGAAATGCGAACTATGTAACATAGGATTCGTAACAAATCAGGAATATATTAATCACATGGGTTCTAAGCATGGTTCTAGCAGTCACATGTGCAATGTATGTGGTCGAACTTGTTATGATAAAGCAGCGCTTCAAAGTCATATGGCTCGACATGCAGAAGGGTACAATGAAAACACCAACATTCGTTGTGAAATATGCAACAAGACGTTCCTTCAAGAACGATACTTGCGTCACCATTTCCAACGCATCCATCAAAACGGCGGTCAGAGATTTATCTGCGATTTGTGCGGCAAAAAAGTGAATTCGAAGCGATCCCTCAGAGACCACATGTATATTCACCAAGGCATCAAGCCGTTGGAATGCGCCCAATGTGGTAAATCATTTGGTCTAAGAACAACCTTGAAACTCCATATTAGAACTCACACGGGACAGAGACCGTATCAGTGTAGTGTTTGCGGGAAAACATTTACTCAACGAAGTCCACTTACTGTCCACATGAGACACCACACTGGAGAAAAACCGTACGAATGCGAGATATGCGATAATAAGTTTAGTATCGTCAATGGATTTGAAGCAACGGGAATTTCTCCGTTTAATCCGGATGTTTTGGCGGAATGCGACTTTATACAAGCCGTTATCAGTGGTGAAAATGAGGCAGCTGTAGCGACTAAATGGGAAGGCATCGATGGTGATATTCAGCGTGGTATTGTGATTGGTGATGTTCCAGAAGAGGTTACTGCTCATGAGACAACATCTGAGACACCATCAACATCTATgTTTGAAAGCAAGAAGAACTACATCAGACGAAAAATATTCAACTCGAGGAGAACCCGAGAGGATATCGATACTCAATCCGAAAGTTCATCTAATTCCACCACTAAAACTGATAACGACTACGtggaaatcaaaattaaaaccatAACTTTTTGGTGTCAGAACTGTAATACCAAATTTTCAGGCGAAAATGATCTTCAAGCTCACATCGACAAGAAAACGTGTCAACACGAACCAGAACCCAACGAGAACGTTTGTAATCTTTGCGGAAAGTACTTCAAGGATCTTAAGTATCTTCGTATTCATATGAAAAATCTTCACGAAAATCCCAAACCTCGGTATGTTTGCTGTAACAGAATTTATTCGATTAAAGATAAATATGAGAAGCACAAGAGGAAGTTTCATAACGAGCAACTGGATCGACAGGCTGATGGTTCGTACCTGTGTAAGTTCTGCAATAAGACCTTTCAGGCATTTCAGAGTATCAACGGTCATATCAATACATACCACACTAAAGAAACTTCCTATTTGTGCAATGTATGTGGAAGAAAATACTACTCCCTCACCGTTCTTCGTCATCATGCTCGCACTCATACCCAATCAGAGGAAATGAAGATCAAAGTGGTGTTTGCTTGTCCGTTTTGCACCCGGGAGTTTCCAACAGAAGATTCTCTGGAAGCCCATAAAACCACTTCTCACACTCAACACTACGACAAACTGGAAGACGGGCGATTCAAATGCAAACATTGCGAGAGAATATTCGTGGCTCGAATATCAGTAGAGGATCACGTTAGTGTAGCTCATCTCCAAGACAAAATCTTCCTTTGCGACCACTGCGGCCGAAATTTCTTCACACAATCCTCACTGAAAAAACATGAAGTCTCGCACATCACCGAGCGAAACTTTCCATGTCCgcattgtttgaaaaagttcaGAATCAAAGCAGAATTGACTAAGCATATTAAAGTGGTCCATCCGGCTAATTCCACCAAGACGACATGCAGATTCTGTTTTAAAACTTTCAAGAACAATACATGTTTAAAGAACCACGTGGCCGTCAAACACAAAATAGAAGAGAATGGTGATAAATCGAACTCGACCAATGCTGAGGGTGAAGATGTGGAAAGCAATATGGAAGCGCTGTTTCGTGATGATACCATTGAAGGTGATGAAGCTGAAGAACAAGTGAACCAAGTATTTGAGCTGACTGGTGAGATGTTCGAGGAAGAAGAAGATTTGGAAGAGGGAAAcgaaaatgaagaaataatgaTTTATGAGATATACAACTGTTGA
- Protein Sequence
- MRKVAKELGVDEKSIRHIIRRKLGLRSCKIARVHFLNDVLKTKRLEKSRRMLRRLGGARLSNVLLTDEPLHNRQNRRQLLRKGQQKTAAAKTIGRNHFTASVMVWAGMCATGETPLFFIERIVKINVASYQQRVLRDVLEPWAAQHFGSAGFTLQIIKVEIKEEKYDYDYQNPKRTKKSLRNKEKQCPICPKILKDNWYLKKHLLTHSEERPHPCPKCDKKFKTQYQVKTHDLRMHGEQQYFECDFCTAKLRSKGSWMIHRRRHLKEYVVKCELCNIGFVTNQEYINHMGSKHGSSSHMCNVCGRTCYDKAALQSHMARHAEGYNENTNIRCEICNKTFLQERYLRHHFQRIHQNGGQRFICDLCGKKVNSKRSLRDHMYIHQGIKPLECAQCGKSFGLRTTLKLHIRTHTGQRPYQCSVCGKTFTQRSPLTVHMRHHTGEKPYECEICDNKFSIVNGFEATGISPFNPDVLAECDFIQAVISGENEAAVATKWEGIDGDIQRGIVIGDVPEEVTAHETTSETPSTSMFESKKNYIRRKIFNSRRTREDIDTQSESSSNSTTKTDNDYVEIKIKTITFWCQNCNTKFSGENDLQAHIDKKTCQHEPEPNENVCNLCGKYFKDLKYLRIHMKNLHENPKPRYVCCNRIYSIKDKYEKHKRKFHNEQLDRQADGSYLCKFCNKTFQAFQSINGHINTYHTKETSYLCNVCGRKYYSLTVLRHHARTHTQSEEMKIKVVFACPFCTREFPTEDSLEAHKTTSHTQHYDKLEDGRFKCKHCERIFVARISVEDHVSVAHLQDKIFLCDHCGRNFFTQSSLKKHEVSHITERNFPCPHCLKKFRIKAELTKHIKVVHPANSTKTTCRFCFKTFKNNTCLKNHVAVKHKIEENGDKSNSTNAEGEDVESNMEALFRDDTIEGDEAEEQVNQVFELTGEMFEEEEDLEEGNENEEIMIYEIYNC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -