Basic Information

Insect: Cosmopolites sordidus
Gene Symbol: -
Assembly: GCA_031761425.1
Location: JARFXV010001195.1:422089-432497[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 9.3e-05 0.018 16.9 0.8 2 23 137 158 136 158 0.97

2 16 7.2e-05 0.014 17.3 0.9 2 23 165 186 165 186 0.97

3 16 0.11 21 7.3 0.8 2 23 194 215 193 215 0.96

4 16 0.00019 0.037 15.9 2.6 1 23 361 383 361 383 0.99

5 16 2.1e-06 0.00041 22.1 7.3 2 23 390 411 390 411 0.97

6 16 0.00033 0.064 15.2 3.1 2 23 428 450 428 450 0.96

7 16 0.0018 0.34 12.9 3.8 1 23 521 543 521 543 0.96

8 16 0.0003 0.059 15.3 1.4 1 23 549 572 549 572 0.95

9 16 6.4e-06 0.0012 20.6 1.6 1 23 577 599 577 599 0.98

10 16 7.3e-05 0.014 17.3 1.6 1 23 608 630 608 630 0.98

11 16 5e-06 0.00096 20.9 1.0 1 23 637 659 637 659 0.93

12 16 1.8e-06 0.00034 22.4 1.6 3 23 671 691 669 691 0.96

13 16 0.0001 0.02 16.8 4.4 1 23 697 719 697 719 0.99

14 16 3.5e-05 0.0067 18.3 1.7 1 23 725 747 725 747 0.96

15 16 7.6e-07 0.00015 23.5 0.4 1 23 753 775 753 775 0.99

16 16 0.00041 0.079 14.9 0.1 1 22 781 802 781 805 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	9.3e-05	0.018	16.9	0.8	2	23	137	158	136	158	0.97
2	16	7.2e-05	0.014	17.3	0.9	2	23	165	186	165	186	0.97
3	16	0.11	21	7.3	0.8	2	23	194	215	193	215	0.96
4	16	0.00019	0.037	15.9	2.6	1	23	361	383	361	383	0.99
5	16	2.1e-06	0.00041	22.1	7.3	2	23	390	411	390	411	0.97
6	16	0.00033	0.064	15.2	3.1	2	23	428	450	428	450	0.96
7	16	0.0018	0.34	12.9	3.8	1	23	521	543	521	543	0.96
8	16	0.0003	0.059	15.3	1.4	1	23	549	572	549	572	0.95
9	16	6.4e-06	0.0012	20.6	1.6	1	23	577	599	577	599	0.98
10	16	7.3e-05	0.014	17.3	1.6	1	23	608	630	608	630	0.98
11	16	5e-06	0.00096	20.9	1.0	1	23	637	659	637	659	0.93
12	16	1.8e-06	0.00034	22.4	1.6	3	23	671	691	669	691	0.96
13	16	0.0001	0.02	16.8	4.4	1	23	697	719	697	719	0.99
14	16	3.5e-05	0.0067	18.3	1.7	1	23	725	747	725	747	0.96
15	16	7.6e-07	0.00015	23.5	0.4	1	23	753	775	753	775	0.99
16	16	0.00041	0.079	14.9	0.1	1	22	781	802	781	805	0.91

Sequence Information

Coding Sequence: ATGATTCCTGAGGATATTCAATTAATAATAGATAAAATTTGCCGATCTTGTATGTGTCAAAGTGCTGAAATGACCAATCTTTTCGAAAAGACTGCGGGGTCATCCGATGAACCAATGCTTCTTTCAGATATGCTCACGGCTTGTACCTCTATTGAGGTGGTAGCAGGGGATGGTTTACCATATTTACTTTGCAGTACATGTGAATCTAAATTAAATTCTGCTTTTGAGTTCAaacaacaatttgaaaaatcaaacttagctttAAGAGAAATAGCAAGTAAACAagaatttaaatcaaaaaaagaagaaagtaTGGTCATTCAACCTACTTTACATGAAGAGCTTTATGATGAGGATGAAGATGATTTACCTTTAGCTAAAAGATTTAGAGATGAAACGGCTGAATTAACTTGTCCATATTGTACAAGAGTTCTAAATAGTAAAAAAGGGTTGCGTACGCACATTAAAAGTCATATAGGTGATGGACTCAGGTATTGTCCACTATGTCCTGTAAAATATTATCGAGCAAATCATTTAATGAGGCATATAAAAACTCATGATAATAAAGGAAACAAACAATCATGTAAGATCTGCTCAGAAAAGTTTCTTTTAACCATAGATTTATTCAAACATATGAAGATACATATTGATGAGGCTGAAAGAAAATGTCAGaaagaacaagaaaaagaaaaaatcattttagagATTAAAGAGGAAAAGGAAGATGTTTCAGTAAAGAATGAAGAAGAGAAAGTAACTGAACAAAAAACTGGAGCAAAAGACcttgaatataatattgaagCGAAATCCACTGATCAAACAGATGAAGAACTTATTATTAATCATCCTGAAGAAGTTAATGATGACCAATATGATAAATTAAAGGATGATGATTCAATGGACATTCCCCTTAGTCAGTTTCCTTTTAGTGATGATGATCATGATAATGACAATGGCCCTATTGAACatgataattataataaggATGATGAATttagagaaaataaaaactgtGAGGAATCTGGTGAAATCcaaccaaaaaagaaaagaggaaGACCAAAGAAAAAgGATTCTACATTATATGAATGTAAAGAATGTAGTAAAATACTTACCACTTATTGTGGTCTCCGAATACATATGAGAAGACACACAGGTGCAGACTTAGCCAGCTGCAAGCACTGCGACAAATCCTTTACAAAGAAAAGCCATCTCAATAGGCATTTAAGGGCCCATGGTATTTTAAGcactaaaaataaatcaaaaggaGATAAAAAGGTTAGGGAGTGTGAATTTTGTGATagaaagtttaaatataaaaaaagttttgtacATCATATGCAAGTGGAACATGGTATGTCTGATATTGAAAGTGAACTTGAGAAGAATGAACTGGACGATTCCGCTAACCAAAATGAATTAAGATTAAATCAAGAAGGAAATGATGAAAATAGACATACAAATGGAGAAGCATTAAATGATGCAATAGAAAATCTAAATGGAGCTGAAGAATTTGATGTATCTGGTTTGGATGATATCAACTCGAAACGTAAAATAAAAGTGCATTCTTGCCACGTGTGTGCGGCTCAATTTGCCAGAGCGAATCATCTCACAAGACATATGACACTACACAGAGCTGTATTGACTCATAAATGCGATCGATGTGATCAGGCATTTTATACAGAAGATCTTTTAAAGCAGCACATAGAGCAACAGCATATTAATAAACCTTATGTCTGTACAACCTGTAACAAACCATTTAGCAGAGGAGAACATCTGATACGTCATCTAAAACTTCACCAAGCTCTTACAGATGAAGGTCAACATAAATGTTCAATTTGTGAAACTCTATTTGCAAGGTCTGATTTGTTAGCAAGACACACAAAGACTCATCTGATGCAAGACAAAAGACATGTCTGTATCGAATGTGGAAAAGCTTTTAACCGTTTAGATAACCTGAAAACTCACCAGAGAATACATACAGGGTTGAAAGACAATTCGAAATTGCACTTGTGCGTTTATTGCGGTAAAGAATTTAATAATTCCAGTAATATGattGTTCACATGAGGAGGCATACAGGTGAAAGGCCCTATAAATGTACGGTGTGTGGTAAAGGATTTCCGAGATCTCATGATCTCAAATGCCATGAAAGGACCCATTCTGGAGAGAAACCATACTTGTGTACTCTTTGTGGAAAATCTTTCAATAAGAGTAATAAATTGCTTAGACATAGTAGAGTTCATACTGGCGAAAGACCTTATGTGTGTAGCATTTGCACTAGGGCATTTACACAGTCAAATGATCTTGCATTGCATATGAGAAGACACACAGGGGCTAGGCCATATGCGTGTGGCGTGTGTCCTGCAAGATTTATACAATCAGGGCAACTGAAAAATCATCGCAGGGCTACCGGTCATTGGATGGAAACACAGCCTGATTTAAAGGGCGGTCACagAGTTGAACCAGTTACTACAGCAGTGGAACCAATGCCgattaaatttaaaacttttggCAAAAATAGACCGGTGAAAATAGAAGATGAAGCCCTTCAACAGCAACTTCAACAACAACAGGTAGAACAGAGGATGGAACAACCGCAACTAACTCAATTACAAGCTCAACCTCAAAGAATATTGATGGGCATTATGGGTAATATCAAAATACAGAATGACGGCTCACCGTTGATAATAGATGGTAACAAATTAGTAGAATTGCCTGGTGGGCAGTTAGGTTTAGTAACCCTGCCCACTGTCATACAGGGGGCTAATGGagaagaaattaaattaaaaacagaaatagGTAGTTTTAATATAACACAAGTAGACGACTTAGATAAGAACGAGATAGTTAGTACCTCAGGTACCTTCCATGAAGGTGATTCGGTCACATTTTCTACAGTACAAACCTCAACAACATATACCTCAGCCGAAAATTTTACGTTTCAAAcctttaattaa
Protein Sequence: MIPEDIQLIIDKICRSCMCQSAEMTNLFEKTAGSSDEPMLLSDMLTACTSIEVVAGDGLPYLLCSTCESKLNSAFEFKQQFEKSNLALREIASKQEFKSKKEESMVIQPTLHEELYDEDEDDLPLAKRFRDETAELTCPYCTRVLNSKKGLRTHIKSHIGDGLRYCPLCPVKYYRANHLMRHIKTHDNKGNKQSCKICSEKFLLTIDLFKHMKIHIDEAERKCQKEQEKEKIILEIKEEKEDVSVKNEEEKVTEQKTGAKDLEYNIEAKSTDQTDEELIINHPEEVNDDQYDKLKDDDSMDIPLSQFPFSDDDHDNDNGPIEHDNYNKDDEFRENKNCEESGEIQPKKKRGRPKKKDSTLYECKECSKILTTYCGLRIHMRRHTGADLASCKHCDKSFTKKSHLNRHLRAHGILSTKNKSKGDKKVRECEFCDRKFKYKKSFVHHMQVEHGMSDIESELEKNELDDSANQNELRLNQEGNDENRHTNGEALNDAIENLNGAEEFDVSGLDDINSKRKIKVHSCHVCAAQFARANHLTRHMTLHRAVLTHKCDRCDQAFYTEDLLKQHIEQQHINKPYVCTTCNKPFSRGEHLIRHLKLHQALTDEGQHKCSICETLFARSDLLARHTKTHLMQDKRHVCIECGKAFNRLDNLKTHQRIHTGLKDNSKLHLCVYCGKEFNNSSNMIVHMRRHTGERPYKCTVCGKGFPRSHDLKCHERTHSGEKPYLCTLCGKSFNKSNKLLRHSRVHTGERPYVCSICTRAFTQSNDLALHMRRHTGARPYACGVCPARFIQSGQLKNHRRATGHWMETQPDLKGGHRVEPVTTAVEPMPIKFKTFGKNRPVKIEDEALQQQLQQQQVEQRMEQPQLTQLQAQPQRILMGIMGNIKIQNDGSPLIIDGNKLVELPGGQLGLVTLPTVIQGANGEEIKLKTEIGSFNITQVDDLDKNEIVSTSGTFHEGDSVTFSTVQTSTTYTSAENFTFQTFN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -