Csor040310.2
Basic Information
- Insect
- Cosmopolites sordidus
- Gene Symbol
- pita_1
- Assembly
- GCA_031761425.1
- Location
- JARFXV010001517.1:260463-272033[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0018 0.35 12.9 0.1 1 23 191 213 191 213 0.97 2 18 0.00072 0.14 14.1 0.8 1 23 219 241 219 241 0.97 3 18 1.1e-05 0.0021 19.9 0.8 1 23 247 269 247 269 0.97 4 18 4.2e-06 0.00081 21.2 0.4 1 23 275 297 275 297 0.98 5 18 3.1e-06 0.0006 21.6 1.9 1 23 303 326 303 326 0.97 6 18 6.1e-05 0.012 17.5 2.8 1 23 332 354 332 354 0.98 7 18 5.1e-05 0.0099 17.8 4.5 1 23 360 382 360 382 0.98 8 18 4.6e-05 0.0089 17.9 1.0 1 23 398 420 398 420 0.95 9 18 0.0015 0.3 13.1 0.1 2 23 426 447 425 447 0.96 10 18 0.00018 0.035 16.0 0.8 1 23 453 475 453 475 0.95 11 18 0.00019 0.037 16.0 0.5 1 23 523 545 523 545 0.92 12 18 0.0013 0.26 13.3 1.0 1 23 551 573 551 573 0.98 13 18 2e-05 0.0038 19.0 3.4 1 23 579 602 579 602 0.97 14 18 0.00012 0.023 16.6 3.4 1 23 608 630 608 630 0.98 15 18 2.8e-05 0.0054 18.6 4.5 1 23 636 658 636 658 0.98 16 18 1.2e-05 0.0024 19.7 1.3 1 23 674 696 674 696 0.95 17 18 0.00068 0.13 14.2 0.2 2 23 702 723 701 723 0.97 18 18 4.2e-05 0.0081 18.0 0.4 1 23 729 751 729 751 0.95
Sequence Information
- Coding Sequence
- ATGGACCGACGAAAGGAAACTCTTCGGGACTTGAAAATATGTCGCTTCTGTCTGTCCAGCGACGAAAAGAACCTGACCAGTATTTATCAGAGAGATGTTAAAATGGCCCCGCTAACTGTCCAGATTATGTCTTGTATATCAATCGAGGTATTTCCGAGCGATGGTCTTCCACAGTTTATTTGTACCATTTGTAAACTTCAAACAAATCAGTcttatattttcaaaactaattgTAAAAAAGCTGATGATGCCTTAAAAAATTTTCTTCAAACAGGTGACCTGATTAAACCTGAACGATCTAAACTAATCAGAAAACCCACTACCCCAATCTTTCCAGTGAAAGATGTCAAAATTGTGGAAAGTTCAGAACCAGAATCTAATTCCTCTAAGAGAATTAAGCTCAAGGATGGTACTGAAATCATAACATTGTGCATCACAAATATAGAAAACAGCACACAAGATGATTCAAGTCAGGATTCACTTCCCAATGATGAAGATTTAGGGGATACTTTTCAAGAAGATGACTTAAACCAATGTCAGGAATCGATAAAGCAAGTTGAAACTGATATTTTTCCTTGTGAACAGTGCGATAGAAGTTTTCCATTAAAGCAACTGCTGGATATACATGTACAGAATCATTCAAGAGAGAGGATTTTTTCTTGTGCCACTTGTGGTAATGAATTTTTCACTAAATATGACCTGCAAATTCATGAAAAGAGTCATTCTGATGTTAAACCATTTAATTGTGGTGTAtgtggtaaggatttttttagagaatCCTTACTGAGAAGACATGAACAGACTCATTCTGATGCAAAGAAATATGTGTGCAATTATTGTAATAAGACATTCATActtcaggaagatctttctaTACATATAATGAAACATGAAAAAAAGAGACCTTTTACATGTAAGGAGTGTGATAAAAGTTTTGTATTTAAACAGGGACTGGAGCGACATATGACATCATTTCACACACAGGATAAACCGCACAAGTGCAACTACTGTGAAGCATCCTTCAGTTCACAAATTAGACTGACTAGACATATAACCACTCATGCCGGATTAAGACCTTATCCTTGCAAGatatGCGGAAGAACGTTTCTTTTGAGTCATCATTTAACTCGTCACATGCGCAATCATTATGCCGCTGACCAAACTGTTAAGCCTGAAGGAATCACTGGTCAGCACAAGTGTGATATTTGCAGCATGTCCTTCAGAAGAAATGACAGTCTCATCAATCACAGTGCTATTCATAGCATGGTCAATTTACGATGTGTGATATGCAACACTTCCTTTGAAACAGCTGATATGGTGAAAGAACATATCACATCCCACTTAGAAGATCTCCCTTACCCATGCGAAAAATGCGACTATAGCTTTGAAAATGAACATCAACTGGAAGAGCATGAAGTTAAACATGCCGAAATGGAATATGAGGACCAGATCGAGAAAGAGGTTCTGTCAGAAGTGCAAGAAGTCATCACTGAGCCCATACTGAACGAGTTTTGCACTGAACATGGCCAGGAGGCCTCTGATAAGACCAACTCTAATATTAAACCATTTAATTGTATTGTCTGTGGTAAGGAGTTTATCAGAGAATCGTTACTGAAAAAACACAAACAGATTCATTCTGAGACAAAGGAATACATATGTAATTATTGCAGCAAGTCGTTTTTGTTCAAGGAAGATCTCTCAGTTCACGTGAtgaaacacgaaaaaaaaatacccttCACATGTAAGGAATGTGATAAGAGCTTTGTTTTTAAACAGGGGTTAGAGCATCACATGACATCGTTTCACACCCAGGATAAACCTCACAAATGTAACTATTGCGAAGCGACTTTTAGTACACAAATTAGACTTACCAGACACCTGACCACTCATGCTGGATTGAGACCGTATCCTTGCAAGatCTGCGGAAGAACTTTCCTGTTAAGTCACCATTTAACTCGTCACATGCGCAGTCATTACGCCGCCGAACAAAATATGAATCCTGAAGAGGTTATTGGTCAGCACAAGTGTGATATTTGCAGCATGTCCTTCAGAAGAAAAGACAACCTTATAAATCACAGTGCTATTCATAGCATGGTCAATTTACGATGTGTCATATGCAACACTTCCTTTGAAACAGCTGATATGGTGAAGGAACATATAACAACTCACTTACAAGGACTTCCTTTCCCGTGCGAAAAATGCGATTATAGCTTCGAAAACCAATATCAACTGGAGGAGCATGAAGTTAAACATGCCGAAATGGAATACGAAGACCAGATCGAGAAAGAAGTCTTGTCGGAAGCGAAGCATATCATGAATGAGTCCGCTGATACTGATGAAGAATATGCTGAAGATGAAAGTGAAGTGGCTCAATATCACATAACGGACATAAATAATCCAGAATTAATTCCAGCTGGTTCTCAAACAGAACTTAAACAAGTTGATACAGCAGGTGCTTCCGTATCCACAAAACAATTAAACAGATATTTTAAACCTTCAACGGATGTTCAGGGAAGCCCTAGCACTGAAGATGATGAAAATCACACCATTAAACCTATTTTCAGGACGGAAGGAACCAAAATGTACGAACGAAAAGGTCCAATTCAGCGGAAACTACCTAAAGTACCCACCGAGAAGGTAAAAACTGCACCCTTAGAGCAAATCAATGAGAAACCGAGAATAGAAAGAAGGGGCATCACATCAGATTTAAGTAATTTACCCTCAAAGAAGCCGGTCAATGTTAAAGTGGGGGATAAAGTTGTAAAGGTACAAAAGTTCATCATTACCAAAGAAGAGATGAAACAAATGGCCAAATTGGGCATTTTAGAAGTTAAAAATGGTCAAGTGACCATGAAGAACCCTGGGCAACCTATTTTAAACGCCACTATTAAGCCAGTACAGCCTAGCGATATCGAAAATCTCATTAATATCCAAAAACAGAAAACTCCCATCAAACAGTATGATAGGAAATCGAAACAGTCTTCGTCATCAGCCGTTGACTCAGTCATCGAAGATTTTTCATAA
- Protein Sequence
- MDRRKETLRDLKICRFCLSSDEKNLTSIYQRDVKMAPLTVQIMSCISIEVFPSDGLPQFICTICKLQTNQSYIFKTNCKKADDALKNFLQTGDLIKPERSKLIRKPTTPIFPVKDVKIVESSEPESNSSKRIKLKDGTEIITLCITNIENSTQDDSSQDSLPNDEDLGDTFQEDDLNQCQESIKQVETDIFPCEQCDRSFPLKQLLDIHVQNHSRERIFSCATCGNEFFTKYDLQIHEKSHSDVKPFNCGVCGKDFFRESLLRRHEQTHSDAKKYVCNYCNKTFILQEDLSIHIMKHEKKRPFTCKECDKSFVFKQGLERHMTSFHTQDKPHKCNYCEASFSSQIRLTRHITTHAGLRPYPCKICGRTFLLSHHLTRHMRNHYAADQTVKPEGITGQHKCDICSMSFRRNDSLINHSAIHSMVNLRCVICNTSFETADMVKEHITSHLEDLPYPCEKCDYSFENEHQLEEHEVKHAEMEYEDQIEKEVLSEVQEVITEPILNEFCTEHGQEASDKTNSNIKPFNCIVCGKEFIRESLLKKHKQIHSETKEYICNYCSKSFLFKEDLSVHVMKHEKKIPFTCKECDKSFVFKQGLEHHMTSFHTQDKPHKCNYCEATFSTQIRLTRHLTTHAGLRPYPCKICGRTFLLSHHLTRHMRSHYAAEQNMNPEEVIGQHKCDICSMSFRRKDNLINHSAIHSMVNLRCVICNTSFETADMVKEHITTHLQGLPFPCEKCDYSFENQYQLEEHEVKHAEMEYEDQIEKEVLSEAKHIMNESADTDEEYAEDESEVAQYHITDINNPELIPAGSQTELKQVDTAGASVSTKQLNRYFKPSTDVQGSPSTEDDENHTIKPIFRTEGTKMYERKGPIQRKLPKVPTEKVKTAPLEQINEKPRIERRGITSDLSNLPSKKPVNVKVGDKVVKVQKFIITKEEMKQMAKLGILEVKNGQVTMKNPGQPILNATIKPVQPSDIENLINIQKQKTPIKQYDRKSKQSSSSAVDSVIEDFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -