Csor021126.1
Basic Information
- Insect
- Cosmopolites sordidus
- Gene Symbol
- -
- Assembly
- GCA_031761425.1
- Location
- JARFXV010000597.1:581430-588412[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0038 0.73 11.9 3.6 1 23 31 53 31 53 0.99 2 23 1.7 3.2e+02 3.6 2.7 2 23 60 82 59 82 0.93 3 23 0.00092 0.18 13.8 0.2 2 23 90 112 89 112 0.96 4 23 6.6e-05 0.013 17.4 2.7 1 23 116 139 116 139 0.94 5 23 0.01 1.9 10.5 1.5 2 23 145 163 145 163 0.88 6 23 1.3e-05 0.0026 19.6 2.3 1 23 169 191 169 191 0.97 7 23 3.3e-05 0.0064 18.3 2.0 1 23 197 219 197 219 0.99 8 23 5.8e-06 0.0011 20.7 1.0 1 23 225 247 225 247 0.98 9 23 1.6e-08 3e-06 28.8 1.1 1 23 253 275 253 275 0.99 10 23 0.017 3.2 9.8 0.5 1 23 281 303 281 303 0.92 11 23 1.3e-05 0.0025 19.6 2.5 1 23 309 332 309 332 0.96 12 23 0.19 38 6.5 0.2 6 23 368 385 367 385 0.97 13 23 8.2e-05 0.016 17.1 0.3 1 23 411 433 411 433 0.98 14 23 0.014 2.7 10.1 0.6 2 23 440 462 439 462 0.95 15 23 0.033 6.4 8.9 2.7 2 23 470 492 469 492 0.96 16 23 0.0065 1.3 11.1 0.6 1 23 496 519 496 519 0.93 17 23 7.3e-05 0.014 17.3 0.2 1 23 527 549 527 549 0.98 18 23 5.6e-06 0.0011 20.8 0.1 1 23 555 577 555 577 0.98 19 23 2.6e-07 4.9e-05 25.0 0.3 1 23 583 605 583 605 0.98 20 23 2.4e-07 4.7e-05 25.1 0.5 1 23 611 633 611 633 0.97 21 23 7.2e-08 1.4e-05 26.7 1.2 1 23 639 661 639 661 0.98 22 23 3.8e-05 0.0073 18.2 2.0 1 23 667 689 667 689 0.98 23 23 0.0003 0.057 15.4 3.9 1 23 695 718 695 718 0.96
Sequence Information
- Coding Sequence
- atgaattttgTAAAGAAAGAATCTCCCGAATACGATTCTGAGGCATCTTGTGAAGACAATCTACTGTCATTCCAGGATGATCTTACCAAATACACTTGTTCGATCTGTTTCACAGAATGTAGTTCCAGACAAAACCTCTTCTTGCATGAACAGACCCATTCGAAGAAAATCTCCATCAAATGTGAAGAGTGCAACATGGACTTTGATTGCTTGAATGATTACAATCATCATCAAAAAGATATTCACAATATTAATATATCTCAAATCGTTTGTTATATCTGCGGTGCCACACTTAACAGTCGCTATAGCTTCTACAGTCACATGAGATCCATTCACGACGAAAATTTTCCATGTGAGATGTGTGAAAAAACCTTTACCAACGCCTGTGatctaaaaaaacattttgttacTTATCATAATGAGAACGGTGAGACTTGCGATCTGTGTGgtcgaaattttaaaaatttacggGTTCACATGAAGAGCCATTCGTCTGCTAAACCATTTGCGTGcaaatattgtaataaaacattttcgtTAAATCGTTACTTGAACTATCATATCAAAATTCATACCGGTGGGTGTCGTTACGTTTGCCAATATTGCAACAAGGGATTTCGAACTTTCAGTGTTCTATCGGAACACAAAAGAACTCATACTGGCGAAAAACCATATGCGTGTTACGATTGTGGGAAAGCGTTTTCCAAAAGGCTGAATATGTTGAGGCACCTTAAAactcacactggtgaaaaaccgtACGTGTGCAACCAATGCGGCAAAGCTTTTtctcaaaagtcaaatatgttaACGCACATGAGAAGTCACTGTAGAGAAAAACCCTTCGTTTGTAAGATCTGTAATAAAGGTTTTAACTTGCTTCAGGGGCTGAAGTTTCACTTAATATCTCATAGTGGTGAAAAACCGTATGAATGCGAGATATGCCATAAGTTTTTCATTAGGAAACCCACTCTGACGCGCCATAAAAAGGAGGTACATCTGAAGGAGGTAACTAAAaatGAATTTCTCGATCCCGAAGCTTGTTCCGAAACCTACCGTGAGGAGAAACTACCATCAAATCACGAGAATCGCATCAATTATGCATGTTCCATTGAGTTTAGTTCTGAACAAAATCTTTCCTTACACAAACAAACTCATTCCGAAGAAAGTACCGTTAAGTGTGAAGAGTATCATGACGAGACATTATTCTCAGATTACAATGGTCTCCTCACTTACGTCTGTTCGATCTGTTCCATTGAGTTTAGTTCCAAGCAAAACCTCTCCTTACACGAAGAAACTCATAATAAAGAAACGACCGTCGAATGCGAAGACTGCCACATCAATTATAATTCTCTAAATGATTATATTCAACACCGAAAAAACGTTCACTATATTAATATCGCCCAAACAGTCTGTTCTATTTGTGGTAACATCCTCACTAATCACCGTTGCTTCTACAACCACATGAGAGTCATTCACGGAGAACATTTCCCATGTGTAAAGTGCGGGGCAACTTTTAGGAAGCGTTTGGGTCTAAAGGAACATTTCGTCACTTATCACAGTGAGAATGATAAAACTGCATTTGTTTGTACAGATTGTGGTAAGGGATTTCTCTCTTCAGGTCTACTCACGGAACATAAAAGGATTCACATCGGTGAAAAACCATTTGCGTGTAACGAATGCGGAGCAGTGTTTGCACAAAGACTCAATATGTTGGCGCACATGAGAACTCATACTGGTGAACAACCGTACGCGTGCAGCGAATGCGGAAAAGCTTTTAACCAAAGGGAAAATATGTTGGTCCACATGAAAACTCATACTGCTAAAAAATCCCACGTATGTAGtgaatgtgggaaagcttttcCTCGTCGACAAAATCTGTCGGTGCACATGCAAATTCAtactggtgaaaaaccacacGTATGTAACGAATGCGGGAAAGCGTTTATTCAAAAACCGACCTTGATGAGGCATATGAAAACGCACACAGGCGAAAAACCGTTCCGTTGTAAGGTTtgtaataaaacttttattggaCGTAGAGAACTGAATTATCATGAAAAAACACATGCTGATGTACAAGGGTTTATATGTCAGATATGTCACCAATGCTTCTCTCAGAAAAGTGCATTGGgtgatcataaaaataaagaacattcAAAGGAGCAACCTTGA
- Protein Sequence
- MNFVKKESPEYDSEASCEDNLLSFQDDLTKYTCSICFTECSSRQNLFLHEQTHSKKISIKCEECNMDFDCLNDYNHHQKDIHNINISQIVCYICGATLNSRYSFYSHMRSIHDENFPCEMCEKTFTNACDLKKHFVTYHNENGETCDLCGRNFKNLRVHMKSHSSAKPFACKYCNKTFSLNRYLNYHIKIHTGGCRYVCQYCNKGFRTFSVLSEHKRTHTGEKPYACYDCGKAFSKRLNMLRHLKTHTGEKPYVCNQCGKAFSQKSNMLTHMRSHCREKPFVCKICNKGFNLLQGLKFHLISHSGEKPYECEICHKFFIRKPTLTRHKKEVHLKEVTKNEFLDPEACSETYREEKLPSNHENRINYACSIEFSSEQNLSLHKQTHSEESTVKCEEYHDETLFSDYNGLLTYVCSICSIEFSSKQNLSLHEETHNKETTVECEDCHINYNSLNDYIQHRKNVHYINIAQTVCSICGNILTNHRCFYNHMRVIHGEHFPCVKCGATFRKRLGLKEHFVTYHSENDKTAFVCTDCGKGFLSSGLLTEHKRIHIGEKPFACNECGAVFAQRLNMLAHMRTHTGEQPYACSECGKAFNQRENMLVHMKTHTAKKSHVCSECGKAFPRRQNLSVHMQIHTGEKPHVCNECGKAFIQKPTLMRHMKTHTGEKPFRCKVCNKTFIGRRELNYHEKTHADVQGFICQICHQCFSQKSALGDHKNKEHSKEQP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -