Csor021143.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Cosmopolites sordidus
Gene Symbol
-
Assembly
GCA_031761425.1
Location
JARFXV010000597.1:922164-934023[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 43 0.0016 0.31 13.1 1.5 1 23 17 39 17 39 0.98
2 43 0.0074 1.4 11.0 0.1 3 23 77 98 75 98 0.96
3 43 9.5e-06 0.0018 20.0 0.1 1 23 102 125 102 125 0.97
4 43 1.7e-05 0.0034 19.2 1.5 1 23 149 171 149 171 0.98
5 43 0.32 62 5.8 0.9 1 23 177 199 174 199 0.91
6 43 1.7e-05 0.0032 19.3 2.3 1 23 205 227 205 227 0.98
7 43 3.9e-06 0.00075 21.3 0.8 1 23 233 255 233 255 0.96
8 43 0.00023 0.045 15.7 0.8 1 23 261 283 261 283 0.98
9 43 0.051 9.9 8.3 0.1 3 23 387 408 385 408 0.96
10 43 0.0064 1.2 11.2 0.4 2 23 413 435 412 435 0.94
11 43 0.096 19 7.5 0.6 7 23 471 487 471 487 0.94
12 43 0.001 0.2 13.6 0.7 3 23 491 515 490 515 0.87
13 43 3.6e-05 0.007 18.2 2.2 1 23 521 543 521 543 0.98
14 43 4.7e-07 9.2e-05 24.1 2.2 1 23 549 571 549 571 0.96
15 43 0.0011 0.21 13.6 0.9 1 23 577 599 577 599 0.98
16 43 0.24 46 6.2 1.3 1 23 605 627 605 627 0.96
17 43 0.0011 0.21 13.6 0.9 1 23 633 655 633 655 0.98
18 43 0.041 7.9 8.6 0.2 1 23 679 701 679 701 0.97
19 43 0.065 13 8.0 0.1 3 23 736 757 734 757 0.96
20 43 0.0012 0.23 13.4 0.4 1 23 761 784 761 784 0.93
21 43 7.9 1.5e+03 1.4 0.6 3 13 791 801 788 807 0.71
22 43 0.39 76 5.5 0.1 7 20 820 833 815 835 0.88
23 43 6.8e-06 0.0013 20.5 2.2 1 23 870 892 870 892 0.99
24 43 8.7e-07 0.00017 23.3 1.6 1 23 898 920 898 920 0.96
25 43 3.3 6.4e+02 2.6 3.9 1 23 926 948 926 948 0.79
26 43 0.00015 0.028 16.3 1.1 1 23 954 976 954 976 0.98
27 43 0.00051 0.098 14.6 0.6 1 23 982 1004 982 1004 0.97
28 43 0.58 1.1e+02 5.0 5.5 1 23 1010 1032 1010 1032 0.96
29 43 0.0083 1.6 10.8 3.6 1 23 1038 1060 1038 1060 0.98
30 43 0.0028 0.54 12.3 0.6 1 23 1066 1088 1066 1088 0.96
31 43 0.00028 0.054 15.4 0.4 1 23 1135 1157 1135 1157 0.98
32 43 0.1 20 7.4 0.0 3 23 1195 1216 1193 1216 0.96
33 43 2.8e-05 0.0055 18.6 0.2 1 23 1220 1243 1220 1243 0.97
34 43 0.046 8.9 8.5 0.5 3 23 1250 1267 1249 1267 0.87
35 43 2.7e-06 0.00051 21.8 1.5 1 23 1273 1295 1273 1295 0.98
36 43 0.25 49 6.1 1.1 1 23 1301 1323 1298 1323 0.91
37 43 1.4e-06 0.00027 22.7 3.5 1 23 1329 1351 1329 1351 0.99
38 43 1.2e-06 0.00024 22.8 1.4 1 23 1357 1379 1357 1379 0.96
39 43 0.001 0.2 13.6 1.4 1 23 1385 1407 1385 1407 0.96
40 43 0.0011 0.21 13.6 0.9 1 23 1413 1435 1413 1435 0.98
41 43 0.0051 0.99 11.5 3.3 1 23 1441 1463 1441 1463 0.97
42 43 0.057 11 8.2 4.6 1 23 1469 1491 1469 1491 0.97
43 43 0.00016 0.031 16.2 3.8 1 23 1497 1520 1497 1520 0.95

Sequence Information

Coding Sequence
ATGTATCATGATGAAGGACTACTATTAGATCGCAAGGATCTCATCAATTATGCCTGTTCCATCTGTTCCATTGAATTTTGTTCCAAACAAGACCTCTTCTTACACGAACAAACTCATTTAAAACAAAGTACAGTTAGATGTGAAGAGTGTAATCTTCATTTCGACTGTTTGAACGACTACAGTCAACATCAAAAAGATGTTCACGGCATTGATAACCCTCAGATCGCTTGTTATATCTGTGGCGTTATACTCATGAATCAGACGAGTTTCTTTAATCACATGAGAACTGTTCATGGTGAAAATTTCCCATGCGAAAGATGCGGGGAAACCTTTAACACGGCTGATGATCTAAATGAACATATCACGACTAATCATAGTGAGATATGCagtaaaaattttgaaaatttaacagATCACATGAAGATCAATTTAGATATTAAACCTTTTCAGTGCAATAGCTGCAATAAAGGTTTTAGTTCTGATCGCTCCTTGAAGAATCACATGAATATCCATACAGGCGAGTGTTCTTATGTTTGTATAGATTGTGGTAAAACTTTTCTCACTTTGAGGATCCTCACGGAGCACAGAAGAGTTCACACTAGTGAAAAACCATATACGTGTTATCAATGTGGAAAAGGTTTTACTAAAAGGCGGAATATGTCAGTGCATATGAGAAATCACACTGCTGAAAAGCCACACGCGTGTAAGGAATGCGGGAAAACTTTTGCAAGAAAAACGAATATGCTGGATCATATGGCCGTCCATTCTGATGAAAGACCCTACatttgtaaaatttgtaataaagGTTTTAGCTTGCGCAAAGTGCTGACGCGCCACGAAAAAATTCATACTGACGAAAATCCATTTATatTTGAGGATTCCTTTTATGAAACGAATTATATAAAAGATGAACATGTAGATTACAAAGATTGTTTTGAAACGTACCATGACGAGGAACTACGGTCAGATCGCAAGGATCCCATCAATTATGCCAATTCCATTGAATTTAATTCCAACGAAAATCTCTCTTTACACGATCAAACTCGTTCAAAAGAAAATAACTTTCAATGTGGAGAGTGTCATCTTGATTTCGACTGTTTAAACGATTACAGTCATCATCAAAAAGATGTTCACGGTATTGATAACCCCCAGATTGCTTGTTATATCTGTGGCATTATGCTCATGAATCGGGCGAGTTTCTACAGTCACATGAAATCCATGCATGGTGAAAATCTTCCATGCGAAAGGTGCAGGCAAACTTTTAACAAGGCTGATGATCTAAAGGAACATTTCGCAACTTATCATTGTGAAAACGGCGAACCTGGTGATATATGCAGTCAAGATTTTAACAATTTAAGAGATTACATGGATAGCCATTTAGATATTAAACCTTTTCAGTATAATCTCCCCAATAGAACTTTTACGTCGAATAACTCCTTGCAGAATCACATAAATTTGCATACAAGCGAGTGTTCTTATGGTTGTATAGATTGTGGTAAAATATTTCCCACTTCGAAGACCCTCACGGAACACAGAAAAGCCCACACCTATGCGAAACCCTATACATGCAACCAATGTGGAAGAGCTTTTACTAAAAGGCGATATATGTCATGGCACATGAAAAATCACACTGGTGATAAATCACACGCTTGTAAGGAATGCGAGAAAACTTTTGCTAGGAGATCGAATCTGTTGGAACATATGAAAACTCACTCCACTGAAAAATCCTATATTTGTAAGATTTGCAACAAAGGTTTTACCTTGGATAAAGTACTGAAACGTCACGAACAAACCCATTCTGATGGAGGACCCTACAGTTGTAAGATTTGTTATAAAGGTTATAGATTGCCTAGTATACGGAACCGTCACGAGAAAACTCATTTTGGCGAAAGACCCTATATCTGTAAGATTTGTAACAGAGGTTTTAGCTTGCGTAATGTGCTGAGGAGTCACGAAAAAACCCATTCTGATGAAAGACCCTATATTTATTTCGAAGATGAGGAACTACTGCCAGATCACAAGGATCTCATCAATTATGCCTGTTCCGTCTGTATGATTGAGTTTAGTTCCAAACAAGATCTCTCTTTACATGAACTAACTCATTCGAAAGTTAGATGTGAAGAGTGTAACCTTGATTTCGACTGTTTAAACGATTACAGTTATCATCAAAAAGATGTTCACGACATTGATAACCCTCAGATCGCTTGTTATATCTGTGGTGTTATGCTCATGAATCGGGCGGGTTTCTACAATCACATGAGATCCCTTCATGGTGAAAATTTTCCATGCGTTAAGTGCGGGCAAACCTTTAACAAGGCTGATGATCTAAAGGGACATTTCGTAACTTATCATAGTGAGAATTGTGAACCTTGCGACATATGCGgtggaaattttaaaaatttaggaGACCACATGAAGACCTATTTGGATATTAAACCTATTCAATGCAATATTAGCAATAAAACTTTTGTTTCGAATAACCACTTGCAGAATCACATAGATATGTCTGCAAGCGAGTCTTCTTATGTTTATACAGATTATGGTAAAGCATTTCTCAATTCAAGGACCCCCACGGAACATAAAAGAGTCCATAACTGTAAAAAACCATATACGTGTAACCAATGTGGAAAAGCTTTTACTAAAAGGCGGTATATGTCATGGCACATGAGAAATCACACTGGTAACAAACCACACGCGTGTAAGAACTGCGAGAAAACTTTTGCTAGAAGGTCGAATCTtttggcccatatggaaactCACTCCAATGAAAAACtccatatttgtaaaatttgcaacAAAGGTTTTACCTTAGGTAAAGTGCTGAAATGTCACGAAAAAACTCATTCTGATGAAAGACCCTACATTTGTAAGATTTGTAATAAAGGTTTTTACTTGCGTAGTGTACTGAACCGTCACGAAAAAACTCATTCTGATGAAAGACCCTACATTTgcaagatttgtaataaaagttttagcTGGCGTAGTGTACTGATCCGTCACGAAACAACTCATTCTGATGAAAGACCCTACACTTGCAAGATTTGCTATAAAAGTTTTGGTGTGCATAGTGTGCTGAAGTGTCACGAAAAAACTCATTCTAATGCAAAGCCCTATGTGTGTAAGATTTGTAATAAAGGTTTTAGTTTGAATACTACACTGAAGTGTCACGAAAAAACTCATTCTAATGAAAGACCCTACATTTGTAATATTTGTCATAGAGGTTTTAGCTTGCCTAATAGGCTGAAGTCTCATGAAATAATTCATACTGGCGAAAAACCTTTTATATTCGAAAATTCGTTTTATGAAACGAATTGTTTAAAAGACGAACCTATAGATTTCGAAGATTGTTCTGAAACCTACCATTATGAGGAACTACTGTTCGATCGCAAGGATTTCATCAATTATACCTGCTCCATTTGTACCATCGAGTTTAGTTCCAAACAAGATCTCTCTTTACATGAACTAACTCATTCAAAAGAAAGTACAGTTAGATGTGAAGAGTGTAACGTTGATTTCGACTGTTTGAATGATTACAGTCATCATCTAAAAGATGTTCACGACATTAATATCCCTCAGATCgcttgttatatatgtggcgtTATACTCATGAATCGGGAAGGTTTCTACAATCACATGAGATCCATTCATAGTGAAAACTTTCCATGCGAAACGTGCGGACAAACCTTTAACAAGTCTGGTGATCTAAATGAACATTTAGCAACTTATCATAGTGAGAATGGTGAACCTTGTGACATATGTGgtcgaaattttaaaaatttaggaGATCACATGAAGACTCATTTGTTTGTTAATACTTTTCAATGCGATGTCTGCAATAAAACTTTTACTTCGTACGACTCCTGGAAGAATCACATGAGTATGCATACAGGCGAGTGTTCTTATGTTTGTATAGATTGCGGTAAAACATTTCTCACTTCGACGATCCTTACGGAACACAGAAGATTACACACTACTGAGAAACCTTATACCTGTAACCAATGTGGAAAAACTTTTTCTAGGAGGCGGTATATGACACTGCACATGAGAAATCACAGTAGTGAAAAACCACACGCATGTAAGGAATGCGAGAAAACTTTTGCTAAAAGATCGAATCTGTTGGCACATATGAAAATTCATTCCAATGAAAAACCTTACATTTGTAAGATTTGTAATAAAGGTTTTAGCTTGCATAGTGTACTGAAGAATCACGAAAAAGCTCACTCTGATGAAAGACCCTTCACGTGTAAGATTTGTTATAAAGGTTTTAGCGCGAGTAATGTGTTGAAACGTCACGAAAAAATTCATTGCGATGAAAGACCCTACATTTGTAAGATTTGTAATAAAGGTTTTAACTTGAACAGTTCGCTGAAGTGTCACGAAAAAACTCATTCTAATGAAAAACCCCACATTTGTAAGATTTGTAATAGAGGTTTTAGCTTACTTAATAATCTGAAGTGTCACGAAAGAACTCATACTGGCGAAAGACCATTTATGTGTGATATATGTCACAAATATTTTGCTCGGAAATTTGATCTTAATCGACATAAAGAAAAAATGCATCTGAATGATTAA
Protein Sequence
MYHDEGLLLDRKDLINYACSICSIEFCSKQDLFLHEQTHLKQSTVRCEECNLHFDCLNDYSQHQKDVHGIDNPQIACYICGVILMNQTSFFNHMRTVHGENFPCERCGETFNTADDLNEHITTNHSEICSKNFENLTDHMKINLDIKPFQCNSCNKGFSSDRSLKNHMNIHTGECSYVCIDCGKTFLTLRILTEHRRVHTSEKPYTCYQCGKGFTKRRNMSVHMRNHTAEKPHACKECGKTFARKTNMLDHMAVHSDERPYICKICNKGFSLRKVLTRHEKIHTDENPFIFEDSFYETNYIKDEHVDYKDCFETYHDEELRSDRKDPINYANSIEFNSNENLSLHDQTRSKENNFQCGECHLDFDCLNDYSHHQKDVHGIDNPQIACYICGIMLMNRASFYSHMKSMHGENLPCERCRQTFNKADDLKEHFATYHCENGEPGDICSQDFNNLRDYMDSHLDIKPFQYNLPNRTFTSNNSLQNHINLHTSECSYGCIDCGKIFPTSKTLTEHRKAHTYAKPYTCNQCGRAFTKRRYMSWHMKNHTGDKSHACKECEKTFARRSNLLEHMKTHSTEKSYICKICNKGFTLDKVLKRHEQTHSDGGPYSCKICYKGYRLPSIRNRHEKTHFGERPYICKICNRGFSLRNVLRSHEKTHSDERPYIYFEDEELLPDHKDLINYACSVCMIEFSSKQDLSLHELTHSKVRCEECNLDFDCLNDYSYHQKDVHDIDNPQIACYICGVMLMNRAGFYNHMRSLHGENFPCVKCGQTFNKADDLKGHFVTYHSENCEPCDICGGNFKNLGDHMKTYLDIKPIQCNISNKTFVSNNHLQNHIDMSASESSYVYTDYGKAFLNSRTPTEHKRVHNCKKPYTCNQCGKAFTKRRYMSWHMRNHTGNKPHACKNCEKTFARRSNLLAHMETHSNEKLHICKICNKGFTLGKVLKCHEKTHSDERPYICKICNKGFYLRSVLNRHEKTHSDERPYICKICNKSFSWRSVLIRHETTHSDERPYTCKICYKSFGVHSVLKCHEKTHSNAKPYVCKICNKGFSLNTTLKCHEKTHSNERPYICNICHRGFSLPNRLKSHEIIHTGEKPFIFENSFYETNCLKDEPIDFEDCSETYHYEELLFDRKDFINYTCSICTIEFSSKQDLSLHELTHSKESTVRCEECNVDFDCLNDYSHHLKDVHDINIPQIACYICGVILMNREGFYNHMRSIHSENFPCETCGQTFNKSGDLNEHLATYHSENGEPCDICGRNFKNLGDHMKTHLFVNTFQCDVCNKTFTSYDSWKNHMSMHTGECSYVCIDCGKTFLTSTILTEHRRLHTTEKPYTCNQCGKTFSRRRYMTLHMRNHSSEKPHACKECEKTFAKRSNLLAHMKIHSNEKPYICKICNKGFSLHSVLKNHEKAHSDERPFTCKICYKGFSASNVLKRHEKIHCDERPYICKICNKGFNLNSSLKCHEKTHSNEKPHICKICNRGFSLLNNLKCHERTHTGERPFMCDICHKYFARKFDLNRHKEKMHLND

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-