Basic Information

Insect: Cosmopolites sordidus
Gene Symbol: -
Assembly: GCA_031761425.1
Location: JARFXV010000597.1:773310-784924[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 3.1e-08 6.1e-06 27.9 1.4 1 21 10 30 10 31 0.95

2 26 4.9 9.6e+02 2.1 0.0 5 20 42 57 41 59 0.86

3 26 7.6e-05 0.015 17.2 1.4 1 23 149 171 149 171 0.98

4 26 0.00013 0.025 16.5 2.4 1 23 177 199 177 199 0.96

5 26 3.1e-07 5.9e-05 24.7 1.5 1 23 205 227 205 227 0.98

6 26 8.8e-07 0.00017 23.3 0.8 1 23 233 255 233 255 0.96

7 26 5.2e-07 0.0001 24.0 2.8 1 23 261 283 261 283 0.97

8 26 3.5e-06 0.00067 21.4 1.6 1 23 289 311 289 311 0.97

9 26 3.8e-08 7.4e-06 27.6 2.2 1 23 317 339 317 339 0.96

10 26 7.1e-07 0.00014 23.6 2.4 1 23 345 367 345 367 0.96

11 26 1.8e-07 3.4e-05 25.5 0.7 1 23 373 395 373 395 0.96

12 26 0.0017 0.32 13.0 0.4 1 23 484 506 484 506 0.98

13 26 7.6e-07 0.00015 23.5 2.0 1 23 528 550 528 550 0.96

14 26 0.0021 0.41 12.7 0.4 1 16 556 571 556 573 0.91

15 26 2.7 5.3e+02 2.9 0.4 9 23 610 624 608 624 0.93

16 26 6e-05 0.012 17.5 0.7 1 23 650 672 650 672 0.98

17 26 1.3e-07 2.6e-05 25.9 4.1 1 23 678 700 678 700 0.98

18 26 1.3e-05 0.0024 19.7 0.5 1 23 706 728 706 728 0.96

19 26 1.1e-06 0.00021 23.0 2.0 1 23 734 756 734 756 0.96

20 26 0.0001 0.02 16.8 1.1 1 23 762 784 762 784 0.97

21 26 2.5e-05 0.0048 18.7 0.4 1 23 790 812 790 812 0.97

22 26 1.7e-06 0.00032 22.4 1.9 1 23 818 840 818 840 0.96

23 26 1.5e-07 3e-05 25.7 1.3 1 23 846 868 846 868 0.97

24 26 1.5e-05 0.0029 19.4 1.5 1 23 874 896 874 896 0.96

25 26 1.6e-06 0.00031 22.5 0.3 1 23 902 924 902 924 0.98

26 26 2.2e-06 0.00043 22.0 1.3 1 23 930 952 930 952 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	3.1e-08	6.1e-06	27.9	1.4	1	21	10	30	10	31	0.95
2	26	4.9	9.6e+02	2.1	0.0	5	20	42	57	41	59	0.86
3	26	7.6e-05	0.015	17.2	1.4	1	23	149	171	149	171	0.98
4	26	0.00013	0.025	16.5	2.4	1	23	177	199	177	199	0.96
5	26	3.1e-07	5.9e-05	24.7	1.5	1	23	205	227	205	227	0.98
6	26	8.8e-07	0.00017	23.3	0.8	1	23	233	255	233	255	0.96
7	26	5.2e-07	0.0001	24.0	2.8	1	23	261	283	261	283	0.97
8	26	3.5e-06	0.00067	21.4	1.6	1	23	289	311	289	311	0.97
9	26	3.8e-08	7.4e-06	27.6	2.2	1	23	317	339	317	339	0.96
10	26	7.1e-07	0.00014	23.6	2.4	1	23	345	367	345	367	0.96
11	26	1.8e-07	3.4e-05	25.5	0.7	1	23	373	395	373	395	0.96
12	26	0.0017	0.32	13.0	0.4	1	23	484	506	484	506	0.98
13	26	7.6e-07	0.00015	23.5	2.0	1	23	528	550	528	550	0.96
14	26	0.0021	0.41	12.7	0.4	1	16	556	571	556	573	0.91
15	26	2.7	5.3e+02	2.9	0.4	9	23	610	624	608	624	0.93
16	26	6e-05	0.012	17.5	0.7	1	23	650	672	650	672	0.98
17	26	1.3e-07	2.6e-05	25.9	4.1	1	23	678	700	678	700	0.98
18	26	1.3e-05	0.0024	19.7	0.5	1	23	706	728	706	728	0.96
19	26	1.1e-06	0.00021	23.0	2.0	1	23	734	756	734	756	0.96
20	26	0.0001	0.02	16.8	1.1	1	23	762	784	762	784	0.97
21	26	2.5e-05	0.0048	18.7	0.4	1	23	790	812	790	812	0.97
22	26	1.7e-06	0.00032	22.4	1.9	1	23	818	840	818	840	0.96
23	26	1.5e-07	3e-05	25.7	1.3	1	23	846	868	846	868	0.97
24	26	1.5e-05	0.0029	19.4	1.5	1	23	874	896	874	896	0.96
25	26	1.6e-06	0.00031	22.5	0.3	1	23	902	924	902	924	0.98
26	26	2.2e-06	0.00043	22.0	1.3	1	23	930	952	930	952	0.98

Sequence Information

Coding Sequence: atgaaaattcacactggtgaaaaaccacacAGATGCAACGAATGTGGGAAAACTTTTTCTCGTCAAGACAATCTGTCGAAGCACATGAAAATTTACACTGGTGAAAAATCACACGCATATAACGAATGTGGGAATACTTTTGCACGGAAACCGATCTTGATGAGGCATAATAAAATGCCCACAGACGAAAGACCGACCGTACCGTTATCCGAAAATTCGTTctgtaaaaaacattttcttgatCCCGAAGACTATTCTGAAACGTACCATGAGGAGGAACTACTGCCAGATTACGAGGATCGCATCAATGATGAATGTTCAATTGAGTCCAGTTCCAAACAAAACCTTTTCTTACAGGAACAAACTCATTTCGAAGAAAGTACCGCTAGATGTGAAGAGTATCATGATGAGGCCCTATTCTCAGTTTGCAATGGCCTCATCACTTATGTTTGTTCGATCTGTTCCATCCAGTTTGCTCATCGACAAAGTTTATCAACGCACATGAAAATTCATACAGATGAAAATTTACACGCATGTAAtgaatgtgggaaagcttttaCTGGTCGACACTATCTGTTGGAGCACAAGAAAATTCACACAGTTCAAAAACCATACGCATGTAACGAGTGTGGAAAATCTTTTGTTCGTCGACACACCCTATCTGAACATATGAAAATTCATACTGGTGAAGAACTACACGCATGTAAGGAATGTGGAAAAACTTTTGTTCGTCGACAAAGTCTGTCTGCGCACATGATAATTCACACTAATGAAAAACCACACTcatgtaacgaatgtgggaaagcttttgctCGTCGATACCATTTGTTGGAccacatgaaaattcacactgaTGAAAAACCATACGCATGTAGCGAGTGTGGGAAAGCTTTTGTTCATCGACAAAGTCTGTCGCATCACATGAtaattcacactggtgaaagACCACACgcatgtaacgaatgtgggaaAACTTTTACTCGTCAAGACAGTCTTTCGAagcacatgaaaattcacactggtgaaaaaccacacGCATGTAACGAGTGTGACAAAGCTTTTACTCGTCGATACAAGCTCCGGGAGCACATGAATATGCACACCGGTGATAAACCACACGCATGTGACGAATGTGGGAAAGTTTTTGCTCGAAAACCGACCTTGATGAGGCATATTAAAACGCACGCAGGCGAAAGAGCGACTATACCATTgtttgaaAATTccttttgcgaaaaaaaaaattttgatcGCGAAGGCTGTTCTGAAAGGTACCGCGAGGAGAAATTATTGTCAAATAACGAGGATCGCATCAATTATGCATGTTCCATTCAGTCTAGTtccaaacaaaacttttcctTACTCGAACAAACCCATTTCGAAGATAGTGCCGTTAAATGTGAAGAGTATCATGACGAGGCCTTATTCTCAGTTTGCAATGGTCTCATCACTTATGTCTGTTCGATCTGTTCCGTCGAGTTTGCTCATGGACAAAGTTTGTCGatgcacatgaaaattcacactgaTGATAAACCACACGGATGTGTGTCAGATCACATGAAAATTCATACTGGTCAAAGACCACACGCATGTAGCGAGTGTGGAAAATCTTTTACTCGTCGACTCAACTTATTTGAGCatatgaaaattcacactggtgaaaaactaCACTCATGTAACGAATGTGGAAAAACTTTTGTTCATCGACAAAGTCTATCCGAAAACTCGTTCCGTGAAAACAGTTTTCTTGATCCCGAAGACTCCTCCGAAACGTACCGCGGGAAGGGACTATCAGATCACGGAGATCGCATCAATTATGTAAGTTCCATTGAGTTCAGTTCcaaacaaaattttttcttACACGAACAGACTCATATCGAAGAAAGTACCGTTAAATATGAAGAGTATCATGACGAGGCCCTATTCTCAGTTTCCAATGGTCTCACCACTTATGTTTGTTCGATCTGTTCCATTGAGTTTCCTCATCAACAAAGTTTGTCGATGCACATGAAAATTCATACCGATGAAAAACCACACGAATGCAATGAATGTGGGAAATCTTTTAGTCGTCGACACAACCTATCTGAACACATGAAAATTCACAGTTGTGAAAAACGACATGCATGTAACaaatgtgggaaagcttttgtTCATCGACAAGGTCTGTGGGCGCACATCATAATTCACACTAATGAAAAACCACACgcatgtaacgaatgtgggaaagcttATGCTCGTCGAGATCATTTGTCGAACCACATGAAAATTCACCGTGATGAAAAACCACACGTATGTAGcgaatgtgggaaagcttttgtTCATCGAAAAAGTTTGTTACCTCACATGTTAATTCACACTGGAGAAAAACCACACACGTGTaacgaatgtgggaaagcttttgctCTTCGACAAGGTCTATCGCAGCACATGCTAATTCACGCTCGTGAAAAACCACACGCATGTAGcgaatgtgggaaagcttttgtTCGTCGACGCCATCTGGCATTGCACATGAAAATTCAtactggtgaaaaaccacacGTATGTAACGCATGTGGGAAGACTTTTGCTCGTCAAGACAATTTGTCGAagcacatgaaaattcacactggtgaaaaaccacacGCATGTAACGAATGCGAGAAAGCTTTTGCTCATCGACAAAGTCTGGCACAGCACATGATAACTCACACTGGTGAAAAGCCATACGTatgtaacgaatgtgggaaAGGTTTTGCTCGTCGATACAGACTGTCAGACCACATGAATATTCACACTGGTGTAAAACCTCACTcatgtaacgaatgtgggaaAGTTTATGCTCTGAAATCGACTTTGGTGAAGCATATTAAAACGCATGCAAGCAAAGGGCCAACAGTGCCATTGTAA
Protein Sequence: MKIHTGEKPHRCNECGKTFSRQDNLSKHMKIYTGEKSHAYNECGNTFARKPILMRHNKMPTDERPTVPLSENSFCKKHFLDPEDYSETYHEEELLPDYEDRINDECSIESSSKQNLFLQEQTHFEESTARCEEYHDEALFSVCNGLITYVCSICSIQFAHRQSLSTHMKIHTDENLHACNECGKAFTGRHYLLEHKKIHTVQKPYACNECGKSFVRRHTLSEHMKIHTGEELHACKECGKTFVRRQSLSAHMIIHTNEKPHSCNECGKAFARRYHLLDHMKIHTDEKPYACSECGKAFVHRQSLSHHMIIHTGERPHACNECGKTFTRQDSLSKHMKIHTGEKPHACNECDKAFTRRYKLREHMNMHTGDKPHACDECGKVFARKPTLMRHIKTHAGERATIPLFENSFCEKKNFDREGCSERYREEKLLSNNEDRINYACSIQSSSKQNFSLLEQTHFEDSAVKCEEYHDEALFSVCNGLITYVCSICSVEFAHGQSLSMHMKIHTDDKPHGCVSDHMKIHTGQRPHACSECGKSFTRRLNLFEHMKIHTGEKLHSCNECGKTFVHRQSLSENSFRENSFLDPEDSSETYRGKGLSDHGDRINYVSSIEFSSKQNFFLHEQTHIEESTVKYEEYHDEALFSVSNGLTTYVCSICSIEFPHQQSLSMHMKIHTDEKPHECNECGKSFSRRHNLSEHMKIHSCEKRHACNKCGKAFVHRQGLWAHIIIHTNEKPHACNECGKAYARRDHLSNHMKIHRDEKPHVCSECGKAFVHRKSLLPHMLIHTGEKPHTCNECGKAFALRQGLSQHMLIHAREKPHACSECGKAFVRRRHLALHMKIHTGEKPHVCNACGKTFARQDNLSKHMKIHTGEKPHACNECEKAFAHRQSLAQHMITHTGEKPYVCNECGKGFARRYRLSDHMNIHTGVKPHSCNECGKVYALKSTLVKHIKTHASKGPTVPL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -