Csor021123.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Cosmopolites sordidus
Gene Symbol
RTase_2
Assembly
GCA_031761425.1
Location
JARFXV010000597.1:524886-571622[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 49 0.013 2.5 10.2 0.9 1 23 72 94 72 94 0.98
2 49 8.5 1.6e+03 1.3 2.3 2 23 101 123 100 123 0.91
3 49 0.033 6.4 8.9 0.4 2 23 131 153 130 153 0.95
4 49 0.0026 0.5 12.4 0.2 1 23 157 180 157 180 0.94
5 49 2.3 4.4e+02 3.1 3.4 2 23 186 204 186 204 0.95
6 49 5e-06 0.00098 20.9 7.4 1 23 210 232 210 232 0.99
7 49 5.8e-06 0.0011 20.7 0.8 1 23 238 260 238 260 0.98
8 49 9.3e-06 0.0018 20.1 0.5 1 23 266 288 266 288 0.97
9 49 3e-06 0.00058 21.6 4.3 1 23 294 316 294 316 0.98
10 49 0.012 2.3 10.3 0.3 1 17 322 338 322 339 0.92
11 49 0.0004 0.077 15.0 1.6 1 23 376 398 376 398 0.99
12 49 0.23 44 6.3 3.1 2 23 405 427 404 427 0.94
13 49 0.087 17 7.6 0.3 2 23 435 457 434 457 0.96
14 49 0.0049 0.95 11.5 4.6 1 23 461 484 461 484 0.96
15 49 0.046 8.9 8.5 0.5 3 23 491 508 489 508 0.87
16 49 5.7e-05 0.011 17.6 4.9 1 23 514 536 514 536 0.99
17 49 0.00084 0.16 13.9 4.3 1 23 542 564 542 564 0.98
18 49 3.4e-06 0.00067 21.4 0.5 1 23 570 592 570 592 0.99
19 49 3.1e-06 0.00061 21.6 0.8 1 23 598 620 598 620 0.98
20 49 0.00074 0.14 14.1 0.4 1 23 626 648 626 648 0.98
21 49 0.00031 0.061 15.3 0.4 1 23 686 708 686 708 0.98
22 49 0.0029 0.56 12.2 0.1 2 23 745 767 744 767 0.96
23 49 0.00017 0.034 16.1 1.9 1 23 771 794 771 794 0.92
24 49 0.086 17 7.6 0.6 3 23 801 818 800 818 0.86
25 49 3.6e-06 0.00069 21.4 5.9 1 23 824 846 824 846 0.98
26 49 0.0023 0.45 12.6 0.3 1 23 852 874 852 874 0.98
27 49 5.7e-06 0.0011 20.8 0.2 1 23 880 902 880 902 0.98
28 49 2.1e-06 0.0004 22.1 0.2 1 23 908 930 908 930 0.98
29 49 0.0016 0.32 13.0 0.5 2 23 940 962 936 962 0.87
30 49 2.3e-05 0.0045 18.8 1.7 1 23 968 990 968 990 0.98
31 49 3.2e-05 0.0061 18.4 0.6 1 23 996 1018 996 1018 0.96
32 49 0.00011 0.021 16.7 0.5 1 23 1032 1054 1032 1054 0.97
33 49 0.023 4.5 9.4 0.3 1 13 1060 1072 1060 1073 0.91
34 49 4.4e-05 0.0086 17.9 1.0 1 23 1113 1135 1113 1135 0.99
35 49 0.32 61 5.8 0.6 2 21 1172 1191 1171 1194 0.94
36 49 0.0022 0.43 12.6 4.8 1 23 1198 1221 1198 1221 0.94
37 49 0.0026 0.5 12.4 0.4 3 23 1228 1245 1226 1245 0.93
38 49 2.2e-05 0.0043 18.9 8.2 1 23 1251 1273 1251 1273 0.99
39 49 0.0052 1 11.4 0.1 1 23 1279 1301 1279 1301 0.96
40 49 0.013 2.4 10.2 0.1 1 23 1307 1329 1307 1329 0.94
41 49 0.00011 0.02 16.8 0.0 1 20 1335 1354 1335 1356 0.92
42 49 0.028 5.5 9.1 1.4 1 23 1911 1933 1911 1933 0.96
43 49 0.012 2.4 10.3 0.2 2 23 1970 1992 1969 1992 0.96
44 49 0.00038 0.074 15.0 2.4 1 23 1996 2019 1996 2019 0.94
45 49 0.094 18 7.5 0.2 6 23 2026 2043 2025 2043 0.87
46 49 1.8e-05 0.0034 19.2 6.0 1 23 2049 2071 2049 2071 0.98
47 49 6.9e-05 0.013 17.3 1.0 1 23 2077 2099 2077 2099 0.97
48 49 0.002 0.39 12.7 0.1 1 23 2105 2127 2105 2127 0.96
49 49 1.6e-06 0.00031 22.5 0.1 1 23 2133 2155 2133 2155 0.99

Sequence Information

Coding Sequence
ATGTTAGACGCCGTCTTCTGGGCGCGGCTAACCGTCCGGCGAGCCGACCGTCCGAGGAATCCGATCGGCGAGGACCAGATTCAGTgcaatttattcttaaaattggTaTTCAAGGACCCATTGTACATAGGGAATTATTTAAAGATAGAATCTCCATGTTCTGAAGAGGAGTCTTACCGTGATGACATATCAGATGGCAATGATCCCGTAAATTATACCTGTTCGATCTGTTCCGTTGAATGTAGTTCCAGACAGGACCTTTCCGTACATGAAGAAACCCATTTCAAGGAAATCACTATCAGTTGTGAAGAGTGCAACATGAACTTCGCCTGCTTGAATGATTACAGTCATCATCAAAAAGATGTTCACAATATTAATAACCCTCAAAttgtttgttatatttgtggTGAAATACTGAAAAATCGCCCCTGCTTCTACAACCACATGAGAGCCATACACGGTGAAAATTTCCCGTGTGAAAGGTGCGGGGTAACTTTTACAAACGCTTTGGATCTAAAGGAACATTTTGTCACGTATCACAACAAAAATGATGAAACCTGCGACGTATGCGGCctgaattttaaatgtttaagaGATCACATGAAGACTCATTCCGGTGTTAAGCCTTATCAGTGTCATTACTGCAACAAAACCTTTACTTCGAATCATTATCTGAAGAATCACCTGAATATCCATACTGGTGAGCGACCTTACGTCTGTACAGAGTGTGGTAAGGGATATCGAACTTCAAGTTTCCTCACGGAACATAAAAGGATTCATACGGGTGAAAAACCACATGTTTGTAACGAATGCGGTAAAGCTTTTACAAAAAGACCTAATATGTTGGCTCACATGAAAGCTCACACAGGTGAAAAACCTCACAGGTGTAACGAATGCGGTAAAGCTTTTACTCACAGGCAAAATATGTTGGCGCACATGAAGACACACACAGACGCAAAACCCTACAGTTGTAAAGTTTGCAATAAAAGTTTTAGCGTACCTAGGCTCTTGAAACTGGAAGATCCACTATACActgtgaattatttaaagaaagaatacGTCGAGGAAGATTCTGAATCATACAATGAAGATAATCTACTGTCAGTTCGAGATGAGCTCACCAGATACACTTGTTCGATCTGTTTCACAGAATATAGTTCCAAACAAAACCTCTCCTTACATGAACGGACCCATTCCAAGGAAATTTCCATCAAATGTAAGGAGTGTAACCAGAACTTCAGTTGCTTAGATGATTATAGTCGTCATCAAAAAGACATGCACAATTTTAATAACGCCCAAATCGTTTGTTATATCTGCGGGGTCATACTTGAGTCACGCACGTGCTTCTATAATCACATGAGAGTCATTCACGATGAAAATTTTCCGTGCGAAATGTGCTCAAAAACTTTTAGCAAGGCTTGTGATCTAAAAGAGCATTTTATCACTTGTCACAACGAGAAGGGTAAACCTTGCGATATTTGTGGtcgaaattttaaaagtttaagcGCTCACATGAAAAGCCACGTGACTGCTAAACCGTATCAGTGTAAATATTGCAGTAAAACTTTTTCGTTAAATTGTTACTTGAAAGATCATATTAGAATTCATACCGGCGAACGTCCTTACGTTTGTACACATTGTAATAAGGCCTTTAGAACTTCGAGTATCTTTACGGAACATAAAAAAACTCACACTGGTGAAAGACCGTATACTTGTCAGGATTGCGGGAAAGCTTTTGCCAGAAGGTTGAATATGTTAACGCatatgaaaattcacactggtgaaagATCGTACGTTTGTAACGAATGCGGAAGAGCTTTTACTCATAGAGCAAATATGTTGTCGCACATGAAAGGTCATAATGTTAACAAACCCTTTGTTTGTAAGGTGTGTAATAAAGGTTTTAGCTTTCTTGGGAGACTGAATGATCACTTAATATCCCATAGTGATGAAAAACCTCATGAATTGAATTACTTAAAGAAAGAATCTCCATGTCCTGAAGACGAATCTTACCATGACCAGATGTTATTATCAGTTCGCAATGATCTCATCAATTACGCCTGTTCAATCTGTTCCATTGAGTTTAGTTCTAAGCAGAACCTCTCCTTGCACGAACAAACTCATTCCAAGGAAATCACCATCAAATGCGAAGAGTGCAATCTTGATTTCGACTGCTTGAATGATTATAGTCATCATCAAAAAAACATTCACAATATTAATAACCCTCAGATTGTTTGTTATGTTTGCGGTATTATTCTTAACAATCGTTCGAGCTTCTATAACCACATGAGATCCATTCACGGTGAGAATTTTCCTTGTGAAATGTGCGGAAAAACTTTTAGTAAGCCTTGCGATCTAAAAGAACATTTCATCAATTATCACAACGAGAACGGTGAACCTTGCGATATATGCGgtcgaaattttaaaaacttaaaagaACACGTGAAGAGTCATCTGGGCATTAAACCTTTTCAGTGCAAATACTGCAAAAAAACTTTTACCTCAAATCATTATTTGAAGAATCATATTAATATCCATACAGGGGAGCGCCCTTACGTTTGTACAGATTGTGGTAAGGGATTTCTAACTTCGAGTATCCTCAAAGAACATAAAAGGATTCACACTGGCGAAAAACCATATGCTTGTAATGAATGCGGAAGAGCTTTTGCTCAAAGACGAAACATGTTGGCGCACCTAAAAAcccacactggtgaaaaaccataCGCGTGTAATAAATGCGGAAAAGCTTTTGCCCAAAAACCAAATATGTCGGCGCACATGAAAAgtcacactggtgaaaaaccctTCGTTTGTAACGTTTGCAATAAAGATTGTGGTAAGGGATTCCGAAGCGTAAGTGCCCTTGCGGAACACAAAACAATTCACACTGGTGTAAAACCGTATGCTTGTAACGAATGCGGAAAACATTTTGCTCAAAGACGATCTATGTTGAGACATCTGAAGGTCCACACTGGTAGAAAACCACACGCGTGTAATGAATGCGGGAAAGAATTTGCTGACAAACGAAATATGGTAGCGCACGTGAAACGGCACAGTGGTCAAAGGATTTCATTTCACACTGGTGAATGGCCTCACGTTTGTACAGATTGTGGTAGAGGATTCCGAAGCTTAAGTGTTCTTGCGGAACACAAAAGAATTCATACTGGTGAAAGACCATATACTTGTAACGAATGCGGAAAAGCTTTCGCTCAAAGACGAATTATattcgAAGACCCATTGTATACAGCCAGTTATATAAAGAAAGAACCTGCGTGTTCTGAAGACGAAACTTATCATGACGAGACACTATTTTCAGTTCGCAACGATCTCGTCACTTATGTATGTTCGATCTGTTCCACTGAGTTTAATTCCAAGCAAAACCTCTCCTTACACCAACAAACTCATTCCAAGAAGATCACCATCAAATGTGAAGTGTGCAATGTCGATTTCCACTGTTTAAAGGATTATAGCCATCATCAAAGAGATATTCATTATAGTAATAATCGTCCAATAGTTTGTTTTATATGCGGCGTCATACTTAACAATCGTTCCGGCTTCTATAATCATATGAAGTGCATCCACGGTGAAAATTTTCCATGTGAAATGTGCggaaaaacttttaacaagtcttgtGATCTAAAGGAGCATTTCGTCACATGTCACGATGAGAATGCTAAACCTTGCGATGTTTGTGGACGGAATTTCGATAATTTAAAAGCGCATATGAAGACACACGTTGATATTAAACAATTTCAGTGCAAATACTGCTATAAAAAGTTTAGGACCAGTTATTACTTGAGGCATCACATCAAAACTCATACCGGTGAATGGCCTTACGTTTGTACAGATTGCGGTAGGGGATTCCTAAACTTGAGTGCCCTTGCGGAACACAAAACAATTCACAGTGGTGAAAAACCTTATGCTTGTAACGAATGCGGAAAAGCTTTTGCTTTAAGATACATTATGTTGGCACATTTGAAAGTTCACACTGGTAGAAAGCCGTATGCGTGCGATGAATGCGGCAAAGCATTTGCTGACAAATCAAATATGTTGGCGCACaataaaataatacaagtagAACCACCAAGAAAAACCAGAGGTATAGCTCAATGTATGCGATGCCAAAACTACGGACACACAAAAACATACTGCAATCGACCGTATGTATGTGTAAAATGTGGTGGACCACACAGTACATCCAGCTGCAAGAAAAGTAAGAACGTACCCGCAAAGTGTGCTCATTGTGGAGGCCCACATACAGCAAGCTACAGAGGATGTGAATTCTACCATAGAATtacagaaaaaccaaataatgcaaataacagaCTCAACATCCAACATAATACAACCCAATCAACAGCTCACATTCGACAAAATATCAGCTATGCAAATGTAACAGGCAATAGAAACATCAATCAAACTAACAACGAAGACAACTCAAATATAATCAGCACATTCTTAGAGGAATTCAAGGCGATGTTTCAGCAACTCGTTCAACAAAATAGCATGGTACTTAACATGCTCACAACGTTGATAAGTGGAGACTACAATAGCAAACATACTCTGTGGGGATCACGGCTGACGACTACTAAAGGCAGAGAACTATCAAATCTGATACATGAACAGAATTACTCGTTCCTGTCAACAGGCACTCCTACGTATTGGCCATCTGATCATAACAAAATACCAGACCTATTAGACTTCTTTATCACCAATGGAATTTCCTCAGAATACATGGACGTTGTATCAAGTTATGACTTATCATCAGATCACTCACCAATAATCGCAACACttagtaattttgttattaataaatacacaattcctggattacacaacaaaaacacaaattggtctaaataccaaaataaaatcgatGAGAAAATAGACCTAAAAGTATCCCTTAAAAATCCGAACGAAATCGATTCGGCAGTAACAAGGCTAACCAGTATCCTAATAGAGGCAGCACAACATGCAACACCTCAATCTGACATGCCAAATCAAGGATATAATATACCGTTACagataaaaaaacttatagctATAAAACGGAAAGCGAGAGCCAAGTGGCATCGAAGCCAGGCTCCGTCAGATAAAACTATCTTAAATAAagcgattaataatttgaaattaaaactaaaagaagctcgagaaagatcatttcaagaatatgttacAAAGCTCAACAGATTTGACAATACAATTTGGAAACCAATCAAACATAAGAGAAAACCTAAAATACAAGCTACACCAATTCGCAACGAAGAAATGCCAAATTGTAACTGGGCCAGAAGCGACGAAGAAAAAGCGACCgtgcttgctaaatattttgctgaagtatttactccaaacgacgaggaactagatgaggaaatagaaagagaattggctgccatcatgacggacataccatccattcaggttgctactccaaaagaagtcaaaagagaaattagtttactgaatacaaaaaaagctccagATAAGCAGCTGTATTTGTGCTCTGAAATTTCAACAGcggaacaaattttaaatactgCACGCAGTAATGAAGACCATGTTTTTAACCAGCATAGTATTTGTCAACGGCGTGAAGATTTATTTGCTATAGAAGTGAGattcgAAGATCCATTGTTTGAACCTATTTATTTGAAGAAAGAATCTCCATATACTGAAGACGAGACTTATCACGACGAGACACTTTTCTCAGTTTGCAATGATCTCATTACTTATGCCTGTTCGATATGTTCCACTGAGTTTAATTCCaagcaaaaccttttttttCATGAACAAACACATTCCAAGAAAATTACCATCAAATGTGAAGAGTGCAACCTCGATTTCCTCTGTTTGAAAGATTATAGCCATCATCAAAAAGATATTCACAATATTAAAACGTCTCAAATCGTTTGTTATATCTGCGGAGTCATACTTAGAAATCGCACCAGTTTCTACAATCACATGAAATCTATTCACGGTGAAAATTTCCCATGCGAAATGTGCggaaaaacttttaacaagtcATGTGATCTTAAGGAGCACTTTGTGACATCTCACAATGAGAACGCTGAACCTTGCGATATTTGTGGacggaatttaaaaaatttaaaagctcATATGGAGAGACATATTGGTATTAAACCATTTCAGTGCAAATACTGCTTCAAGACGTTTACGGACAATCAGTACTTGAAGCATCACATTAAAATTCACAAGGGTGAATGGCCTCACGTTTGTACAGATTGTGGTAAGGGATTTCGAAACGCGAGTATCCTCACGGAACACAAAAGAATGCATACTGGTGAAAAACCATATGCTTGTAATGAATGCGGAAAAGCTTTTGCCCAAAGACGAATTATGTTGGCGCACCTGAAAATCCACACTGGGAGAAAACCATACACGTGCAATGAATGCGGTAAAGCCTTTGCTAACAAAGCAAATATGGTAGCGCACGTGAAACGTCACAGCGCTGGAACAACTGCAACAACGAAACCATACTCCCTTGTCCCGGCTGAATTCTCCACATATAACCGCAAAAGTTATTGCATCATCATCAATTTCGTTGTCTGTGTCCGCGCCATCATAATCGTCTTTACCACTGCATTCTTTATGGATCCAGCTGGAACAACTGCAACAACGAAACCATACTCCCTTGTCCCGGCTGAATTCGCCACATATAACCGCAAAGGTTATTGCATCATCATCAATTTCGTTGTCTGTGTCCGTGCCCTCATAATCGTCGCCATTGCATAA
Protein Sequence
MLDAVFWARLTVRRADRPRNPIGEDQIQCNLFLKLVFKDPLYIGNYLKIESPCSEEESYRDDISDGNDPVNYTCSICSVECSSRQDLSVHEETHFKEITISCEECNMNFACLNDYSHHQKDVHNINNPQIVCYICGEILKNRPCFYNHMRAIHGENFPCERCGVTFTNALDLKEHFVTYHNKNDETCDVCGLNFKCLRDHMKTHSGVKPYQCHYCNKTFTSNHYLKNHLNIHTGERPYVCTECGKGYRTSSFLTEHKRIHTGEKPHVCNECGKAFTKRPNMLAHMKAHTGEKPHRCNECGKAFTHRQNMLAHMKTHTDAKPYSCKVCNKSFSVPRLLKLEDPLYTVNYLKKEYVEEDSESYNEDNLLSVRDELTRYTCSICFTEYSSKQNLSLHERTHSKEISIKCKECNQNFSCLDDYSRHQKDMHNFNNAQIVCYICGVILESRTCFYNHMRVIHDENFPCEMCSKTFSKACDLKEHFITCHNEKGKPCDICGRNFKSLSAHMKSHVTAKPYQCKYCSKTFSLNCYLKDHIRIHTGERPYVCTHCNKAFRTSSIFTEHKKTHTGERPYTCQDCGKAFARRLNMLTHMKIHTGERSYVCNECGRAFTHRANMLSHMKGHNVNKPFVCKVCNKGFSFLGRLNDHLISHSDEKPHELNYLKKESPCPEDESYHDQMLLSVRNDLINYACSICSIEFSSKQNLSLHEQTHSKEITIKCEECNLDFDCLNDYSHHQKNIHNINNPQIVCYVCGIILNNRSSFYNHMRSIHGENFPCEMCGKTFSKPCDLKEHFINYHNENGEPCDICGRNFKNLKEHVKSHLGIKPFQCKYCKKTFTSNHYLKNHINIHTGERPYVCTDCGKGFLTSSILKEHKRIHTGEKPYACNECGRAFAQRRNMLAHLKTHTGEKPYACNKCGKAFAQKPNMSAHMKSHTGEKPFVCNVCNKDCGKGFRSVSALAEHKTIHTGVKPYACNECGKHFAQRRSMLRHLKVHTGRKPHACNECGKEFADKRNMVAHVKRHSGQRISFHTGEWPHVCTDCGRGFRSLSVLAEHKRIHTGERPYTCNECGKAFAQRRIIFEDPLYTASYIKKEPACSEDETYHDETLFSVRNDLVTYVCSICSTEFNSKQNLSLHQQTHSKKITIKCEVCNVDFHCLKDYSHHQRDIHYSNNRPIVCFICGVILNNRSGFYNHMKCIHGENFPCEMCGKTFNKSCDLKEHFVTCHDENAKPCDVCGRNFDNLKAHMKTHVDIKQFQCKYCYKKFRTSYYLRHHIKTHTGEWPYVCTDCGRGFLNLSALAEHKTIHSGEKPYACNECGKAFALRYIMLAHLKVHTGRKPYACDECGKAFADKSNMLAHNKIIQVEPPRKTRGIAQCMRCQNYGHTKTYCNRPYVCVKCGGPHSTSSCKKSKNVPAKCAHCGGPHTASYRGCEFYHRITEKPNNANNRLNIQHNTTQSTAHIRQNISYANVTGNRNINQTNNEDNSNIISTFLEEFKAMFQQLVQQNSMVLNMLTTLISGDYNSKHTLWGSRLTTTKGRELSNLIHEQNYSFLSTGTPTYWPSDHNKIPDLLDFFITNGISSEYMDVVSSYDLSSDHSPIIATLSNFVINKYTIPGLHNKNTNWSKYQNKIDEKIDLKVSLKNPNEIDSAVTRLTSILIEAAQHATPQSDMPNQGYNIPLQIKKLIAIKRKARAKWHRSQAPSDKTILNKAINNLKLKLKEARERSFQEYVTKLNRFDNTIWKPIKHKRKPKIQATPIRNEEMPNCNWARSDEEKATVLAKYFAEVFTPNDEELDEEIERELAAIMTDIPSIQVATPKEVKREISLLNTKKAPDKQLYLCSEISTAEQILNTARSNEDHVFNQHSICQRREDLFAIEVRFEDPLFEPIYLKKESPYTEDETYHDETLFSVCNDLITYACSICSTEFNSKQNLFFHEQTHSKKITIKCEECNLDFLCLKDYSHHQKDIHNIKTSQIVCYICGVILRNRTSFYNHMKSIHGENFPCEMCGKTFNKSCDLKEHFVTSHNENAEPCDICGRNLKNLKAHMERHIGIKPFQCKYCFKTFTDNQYLKHHIKIHKGEWPHVCTDCGKGFRNASILTEHKRMHTGEKPYACNECGKAFAQRRIMLAHLKIHTGRKPYTCNECGKAFANKANMVAHVKRHSAGTTATTKPYSLVPAEFSTYNRKSYCIIINFVVCVRAIIIVFTTAFFMDPAGTTATTKPYSLVPAEFATYNRKGYCIIINFVVCVRALIIVAIA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-