Csor021130.1
Basic Information
- Insect
- Cosmopolites sordidus
- Gene Symbol
- -
- Assembly
- GCA_031761425.1
- Location
- JARFXV010000597.1:612504-640123[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 55 8.5 1.6e+03 1.3 0.3 10 23 16 29 14 29 0.94 2 55 0.00017 0.032 16.1 0.2 1 23 55 77 55 77 0.98 3 55 0.93 1.8e+02 4.3 0.2 7 23 126 142 126 142 0.90 4 55 5.6e-06 0.0011 20.8 2.3 1 23 148 170 148 170 0.98 5 55 2.4e-06 0.00046 21.9 2.7 1 23 176 198 176 198 0.98 6 55 0.00017 0.032 16.1 0.8 1 23 204 226 204 226 0.93 7 55 4.5e-06 0.00087 21.1 1.7 2 23 233 254 233 254 0.98 8 55 3.4e-07 6.6e-05 24.6 2.3 1 23 260 282 260 282 0.98 9 55 2.2e-06 0.00043 22.1 2.2 1 23 288 310 288 310 0.96 10 55 2e-07 3.8e-05 25.3 1.1 1 23 316 338 316 338 0.98 11 55 0.00015 0.028 16.3 0.2 1 23 344 366 344 366 0.93 12 55 4.5e-06 0.00087 21.1 1.7 2 23 373 394 373 394 0.98 13 55 0.0015 0.29 13.1 0.2 1 23 481 503 481 503 0.98 14 55 0.096 19 7.4 0.3 2 22 543 560 542 560 0.89 15 55 0.13 24 7.1 1.9 1 23 570 590 570 590 0.93 16 55 0.41 79 5.5 0.4 7 23 602 618 602 618 0.95 17 55 0.0065 1.3 11.1 0.6 4 23 624 643 624 643 0.96 18 55 2.5e-07 4.8e-05 25.0 0.5 1 23 649 671 649 671 0.98 19 55 5.5e-07 0.00011 23.9 1.1 1 23 677 699 677 699 0.98 20 55 4e-07 7.8e-05 24.4 3.0 1 23 705 727 705 727 0.98 21 55 4.9e-07 9.5e-05 24.1 0.8 1 23 733 755 733 755 0.98 22 55 9.4e-06 0.0018 20.1 3.3 1 23 761 783 761 783 0.96 23 55 8.4e-07 0.00016 23.4 0.5 1 23 789 811 789 811 0.98 24 55 1.6e-06 0.00032 22.5 0.6 1 23 817 839 817 839 0.96 25 55 1.4e-05 0.0028 19.5 0.1 1 23 845 867 845 867 0.97 26 55 0.2 38 6.5 0.2 1 13 873 885 873 887 0.91 27 55 0.00013 0.025 16.5 0.4 1 23 1029 1051 1029 1051 0.98 28 55 0.11 21 7.3 1.1 2 23 1088 1110 1087 1110 0.95 29 55 0.026 5 9.2 1.6 1 23 1114 1137 1114 1137 0.94 30 55 0.1 20 7.4 0.7 1 23 1165 1187 1165 1187 0.95 31 55 1.1 2.1e+02 4.2 0.1 8 23 1200 1214 1195 1214 0.88 32 55 1.4 2.7e+02 3.8 0.1 5 15 1224 1234 1223 1236 0.87 33 55 0.00013 0.025 16.5 0.4 1 23 1315 1337 1315 1337 0.98 34 55 4.8 9.3e+02 2.1 1.4 2 23 1374 1396 1373 1396 0.94 35 55 0.036 7 8.8 1.2 1 23 1400 1423 1400 1423 0.94 36 55 2.7 5.3e+02 2.9 0.5 11 23 1433 1445 1431 1445 0.89 37 55 0.19 37 6.5 0.1 5 23 1458 1476 1457 1476 0.96 38 55 5.3e-06 0.001 20.9 1.1 1 23 1482 1504 1482 1504 0.97 39 55 5.3 1e+03 2.0 0.0 5 16 1514 1525 1513 1527 0.87 40 55 8.8e-07 0.00017 23.3 1.3 1 23 1561 1583 1561 1583 0.98 41 55 3.2e-06 0.00062 21.5 0.2 1 23 1589 1611 1589 1611 0.98 42 55 4.3e-06 0.00084 21.1 1.6 1 23 1617 1639 1617 1639 0.98 43 55 7.1e-06 0.0014 20.5 2.4 1 23 1645 1667 1645 1667 0.96 44 55 1.3e-05 0.0026 19.6 2.4 1 23 1673 1695 1673 1695 0.96 45 55 0.45 87 5.3 5.9 1 23 1740 1762 1740 1762 0.98 46 55 2.9 5.5e+02 2.8 2.4 2 23 1769 1791 1768 1791 0.93 47 55 0.0052 1 11.4 0.1 2 23 1799 1821 1798 1821 0.96 48 55 0.0053 1 11.4 1.7 1 23 1825 1848 1825 1848 0.94 49 55 0.0048 0.94 11.5 2.7 3 23 1852 1872 1851 1872 0.93 50 55 2.3e-05 0.0045 18.8 2.8 1 23 1878 1900 1878 1900 0.98 51 55 0.00011 0.021 16.8 2.0 1 23 1906 1928 1906 1928 0.99 52 55 5.7e-05 0.011 17.6 0.9 1 23 1934 1956 1934 1956 0.98 53 55 3.9e-07 7.6e-05 24.4 4.5 1 23 1962 1984 1962 1984 0.98 54 55 0.1 20 7.3 0.3 1 23 1990 2012 1990 2012 0.84 55 55 7.4e-06 0.0014 20.4 4.1 1 23 2018 2041 2018 2041 0.96
Sequence Information
- Coding Sequence
- ATGTCAGATCACGACGATCGCATCAATTATGACAATTCCTTTGAGTTTAGTTCCAAACAAGACCTTTCCTTACACGAACAAActcattccgaagaaaataccGTTAAATGTGAAGAGTATCATGACGAGACCCTGTTTTCAGTTTGCAATGGTCTCACCACTTATGTCTGTTCGATCTGTTCCATTGAGTTTAATTCCAAAGAGAATCTCTCTTTACACGTAGAAACTCATAAGAATGAAACTGCCATCAAATGTGAAGAGTGCAATCTTGATTTCGATTGCACGACTGATTATAGGCTTCACTGGAAAAACGTTCATATATTGGTACACATGAAAACTCATACCGTTGAAAAATCGCACGAATGGGGCGAATATGGGAAAGGTCTTCCTCGTCGACATAATCTGTCGGAccacatgaaaattcacactggtgaaaaaccataTGTATGTAACaaatgtgggaaagctttttctcatcaaaaatatctatcgATGCATGTGAAAATTCACATTGATGAAAAACCACACACATGTAAggaatgtgggaaagcttttgctCGTCAAAACCATCTGTCAGATCACATAaaaattcacactggtgaaaaaccataCGCGTGTATcgaatgtgggaaagcttttaTTCATCGAGACTTTCTGTTGAAGCACATGAAAATTCACTCTGGTGAAAAACCACCAAcatgtaacgaatgtgggaGAGCTTTTGCTCATAAACAAAGTCTGTTAAAGCATATGAAAATTCACACCGGTGAAAAACCACACACATGTAACGAATGCGGGAAAGCTTTTGCTCGTCAAAACTATCTGTTTAGGCACATGAAAATTCACGCTGATGAAAAACCACACGCATGTAACGAATGTGGAAAAACTTTTACTTATAAACAATATCTGTTGATGCATATGAgaattcacactggtgaaaagCCATACGCATGTAACGAATGTGGAAAAGCTTTTACTCGTCAATACCATCTGTCGGATCACATAaaaattcacactggtgaaaaaccataCGCATGTATCGAATGTGGAAAAGCTTTTATTCGTCGAGACTTTCTGTTGaatcacatgaaaattcacTCTGGTGAAAAACCACCAAcatgtaacgaatgtgggaGAGCTTTTGCTCATAAACAAAGTTTATTAAAGCATATGAAAATTCACACCGGTGAAAAACCAGAcatatttgaaaATTCGTTTTGTGAAAAAACTTTTCTTGATCCGGAAGACTGTTCGGAAACGTACCTCAAGGAGGAACTAATACCAGATCTCGAGGATCTCATCAATTATACACATTCCTTTGAGTTTAGTTCCAAACAAAATCTTTCCTTAGACGAACAAACTCAATCCGAAGATAATACCGTCAAATGTGAAGAGTATCATGACGAGACCCTATTCTCAAATTGCAATGGTCTTATCACTTATGTCTGTTCGATCTGTTCCATTGAGTTTAATTCCAAACAAGATCTCTCTTTACACGAAGAAACTCATATGAAAGAAACTACCATCAAATGTGAAGAGTGTAACCTTGATTTCGATTGTACTATTGATTATAGGCGTCACTGGGAAAACGTTCACtatattataaaactaaatcataattataaaacTTGCAATATATGCGGTCggaattttgaatatttaaacgcCCACATGAAAACTAATTCTGATGTTAAGCTAGGGAGACCGTTTGTTTGTACGGATTGTGATAAGAAAAAGAAATCTAATATGTCAGAGCACATGAGAACTCACTCTGGTGAAAATCAATATGCTGGCAACGAATACGGAGAAGCTTTTAACCACAAAAAAGATATGTTGATACACATGAAAACTCATACCGTTGAAAAATCGCACGAATGTGGGAAAGATCTTTCTAGTCGACAAAATCTGTCTGACCatatgaaaattcacactgaTGGAAAACCATATGTTTGTAACaaatgtgggaaagcttttgtTCAGCAACAAAATCTGTCGATGCATATGAAAATCCATACTGGTAAAAAACCACACACTTGCAAtgaatgtgggaaagcttttgtTCAGCAACAAAATCTGTTGATGCATATGAAAATCCACACTGTTAAAAAACCACACACATGCAAtgaatgtgggaaagcttttaCTCGTCAACAATATCTGTCGAagcacatgaaaattcacactaGTGAAAAACCATACgcatgtaacgaatgtgggaGGGCTTTCGCCCATCGAGATACTCTAATGAAACACATGAAAATTCACATTGGTGCAAAACCACACGCATGCAACGAATGTGGGAACACTTTTACTCGTCAACACAATCTGTCGgagcacatgaaaattcacactggtgaaaaaccataCGCCTGCAACGACTGTGGGAAAGCTTTTATTAGTCGATACAAGCTGTCGCagcacatgaaaattcacactggtgaaaaaccacacGCATGCAACGACTGTGGGAAAGCTTTTATTAGTCCATACAAGCTGTCGCagcacatgaaaattcacactaGTGAAAAACCATTTGCATGTAACGAATGTGGAAGAGCTTTTGCTCGTCGACAGTATCTATTGGAACACATAAACATTCACGCTAGTGAAAAACTATACGCATGTAACCAATGTGAGAAATCTTTTGCTCGTCGAGAAGTTTTTCCTCAAAAATTACTTGTTTTATCAGAAGATGATATTATGTCAAGGGGTGAAAGACTGCAAACCAAATACAAAACTGATACTGATCCCACTCTGCATTTAGAACTGGTTTCACTCCGGATGGGCCTAGAATTTGAAATAGCACAGTTAGGTTCAGCTTATgatctttttattgtttttggtaAattcgaagattggttttgtgaaaaaaaaatccttgatCCCAAAGACTGTTCTGAAACGTACCGCGAGGAGGAACTAATGTCAGATCATGAGGATCACATCAAATATGCACATTCCATTGAGTGTAGTCCCAAACAAAACCTTTCCTTACACGAACAAACTCATTCCGAAGAATGCGCCGTTAAATGTGAAGAGTATCATGACGAGGCCCTATTCTCAGTTTGCAATGGTCTCATCACTTATGTCTGTTCGATCTGTTCCATTGAGTTTAGTTCCAAGCAAAACCTTTCGTTACACGAACAAACTCATACCAAAGAAACTACCATAAAATGTGAAGAGTGCAACCTTGATTTCGATTGTGTGAGTGATTATAGCCATCACCAGAAAAACGAGCACCATATTAAGAAGAACCAAAtagtttgtttaatttgtgGTAACACCATCAAAGATCGTCGCTGCTTCTATAACCATATGAGATTAATTCACAGAGAACATTTCCCATGTGAAAGGTGCGGAGCAACTTTTAGGAAGCATTTAGATCTAAAGGAACATTTCGTCACCTATCATAATTATAAAACTTACAATATATGCGGTCGTAATTTAATATCCTTAAACGCTCATATCACGACTCATTCAGGTTCTAAGCCTTTCGTTTGTATAGATTGTGGTAAGGAATTTCTATCTTCGAGTCGATTCACGGAACACAAAAGAATTCACACCGGTGAAAAACCATTAGTGTGTAACGAATACGGGACAGCATTTTCAAGATATAATATGTTAGCGCACATGAGAACTCACACTGGAGAAAAGCAATATGCCGGCAATGAATGCGGAaaagtttttaaccaaaaaGAACATATattcgaaaattcattttatgaaCAAAAAATTCTTGATCCCGAAGTCTGTTCTGAAACGTACCGCAAGGAGGAACTAATGTCAGATCATGTGGATCGTAGGAATTATGAACATTCCATTGAGTTTAGTTCTAAACAAAACCTTTCCTTACTCGAACAAACTTATTCCGAAGAAAGCACCGTTAAATGTGAAGAGTATCATGACGAAGCCCTATTCTCAGTTTGCAATGGTCTCATCACTTATGTTTGTTCGATCTGTTCCATTGAGTTTAGTTCCAAACAAAACCTTTCGTTACACGAACAAACTCATACCAAAGAAACCCCCGTCAACTGTGAAGAGTGCAACCTTGAATTTGATTGTGTAATTGATTATAGTCATCACCAAAAAAACGTGcactatattaataaaaaccaaatGGTCTGTTTAATTTGTGGTAACATCCTCGAAGATCACCTTTGCTTTTACAAACACATGAGATTAATTCACAAAGAACATTTTCCCTGTGAAAGGTGCGGAGGAACATTTAGGAAGCCTTTAGATCTAAAGGAACATTTCGTCACCTGTCATAATTATATAACTAACAATATATACAGTCGTAATTTAAAATCCTTAAACGTTCATATGAAGACTCATTCAGGTGCTAAGCTAGGGAGGCCTGTCGTTTCTACAGATTGTGGTAAGGAATTTCTCTCTTCAAGTCTATTCGCGGAACACAAAAGGATTCACACCGGCGAAAAACCATTCGCGTGTACCGAATGCGGGACAGCATTTTCAAAAAGATATAATATGTTAACGCACATGAAAACTCACGCTGATGAAAAGCAATATGCCGACAATGAATGCgaaaaagtttttaaccaaaaaGAACATATGTTAGTAAACATAAAAACTCATACCGGTGAAAAATCTGTGGTCTGTAAAAACTCTCGTCGAGACAATCTGTCGGAGgacatgaaaattcacactgaTGGAAAAACATACGTATGTAACGACTGTGGAAAATATTTTGCTCGTCAACACAATCTGTCTGAGCACATGAcaattcacactggtgaaaaaccatacgcatgtaacgaatgtgggaGAGCTTTTGCCCGTCGAAACTATCTGTTAGAGCACATGAAAATTCAtactggtgaaaaaccacatACATGTAACCAATGTGGAAAAGCTTTTGCTTATCAACAAAGTCTGTCGATGCATATGAGAATTCACACAGGCGAAAAACCACATGCTTGTAACcaatgtgggaaagcttttgctCATCGAAAAAGTCTGACGGAGCACATGAATgttcacactggtgaaaaaccacatGCTTGTAACGAATGTGGAAAAGCTTTTGCTCATCGACAAAGTTTGTCGGAGCACATGAAAAGTCACACTGATGAAAAACCATACGCATTGGAGGATCCATTGTATATAGTGAATTTTGTAAAGAAAGAATCTCCCGAATACGATTCTGAGGTATCCTTTGAAGAGAATCTACTGTCATTCCAGGATGATCTTACCAAATACACTTGTTTAATCTGTTTCACAGAATGTAGTTCCAGACAAAACCTCTCCTTGCATAAACATACCCATTCGAAGAAAATCTCCATCAAATGTGAAGAGTGCAACATGGACTTCGCTTGCTTGAATGATTACAATCATCATCAAAAAGATATTCACAATATTAATATATCTCAAATCGTTTGTTATATCTGCGGTGCCATACTTAATAGTCGCTCCAGCTTCTACAGTCACATGAGATCCATTCACGATGAAAATTTTCCATGTGTGTTGTGCGAAAAAACGTTTGGCAACGCCTGTGacctaaaaaaacattttgttacTTATCACGATGAGAACTGTGAGACTTGCGATCTGTGTGgtcgaaattttaaaaatttacaagCTCACATGAAGAGTCATTCGTCTGCTAAACCATTTGAGTGCAAATATTGTAACAAAACATTTTCGTTAAATCGTTACTTGAACTATCATATCAAAATTCATACCGGTGAGTGTCGTTACGTTTGCCAATATTGCAACAAGGGATTTCGAACTTTCAGTGTTCTATCGGAACACAAAAGAACTCATACAGGCGAAAAACCATATGCGTGTTACGATTGTGGGAAAGCTTTTTCCAAAAGGCTTAATATGTTGACGCACCTGAAAACCCATACTGGTGAAAAACCGCACGTGTGCAACCACTGCGGCAAAGCTTTTtctcaaaagtcaaatatgttgACGCACATGAGAAGTCACAGTAGTGAAAAACCCTTCGTTTGTAAGATCTGCAATAAAGGTTTTAACTTGCTTCAGGGTCTAAAGTTTCATTTAATAGCTCATAGTGGTGAAAAACCGTATGAATGCGAGATATGCCACAAGTTTTTCAGTAGGAAAACCACTCTGACGCGCCATAAAAGGGAGGTACATCTGAAGGAAGTAACTAAAGCAAGATTGAAGAGTAAAACTGATCAATAA
- Protein Sequence
- MSDHDDRINYDNSFEFSSKQDLSLHEQTHSEENTVKCEEYHDETLFSVCNGLTTYVCSICSIEFNSKENLSLHVETHKNETAIKCEECNLDFDCTTDYRLHWKNVHILVHMKTHTVEKSHEWGEYGKGLPRRHNLSDHMKIHTGEKPYVCNKCGKAFSHQKYLSMHVKIHIDEKPHTCKECGKAFARQNHLSDHIKIHTGEKPYACIECGKAFIHRDFLLKHMKIHSGEKPPTCNECGRAFAHKQSLLKHMKIHTGEKPHTCNECGKAFARQNYLFRHMKIHADEKPHACNECGKTFTYKQYLLMHMRIHTGEKPYACNECGKAFTRQYHLSDHIKIHTGEKPYACIECGKAFIRRDFLLNHMKIHSGEKPPTCNECGRAFAHKQSLLKHMKIHTGEKPDIFENSFCEKTFLDPEDCSETYLKEELIPDLEDLINYTHSFEFSSKQNLSLDEQTQSEDNTVKCEEYHDETLFSNCNGLITYVCSICSIEFNSKQDLSLHEETHMKETTIKCEECNLDFDCTIDYRRHWENVHYIIKLNHNYKTCNICGRNFEYLNAHMKTNSDVKLGRPFVCTDCDKKKKSNMSEHMRTHSGENQYAGNEYGEAFNHKKDMLIHMKTHTVEKSHECGKDLSSRQNLSDHMKIHTDGKPYVCNKCGKAFVQQQNLSMHMKIHTGKKPHTCNECGKAFVQQQNLLMHMKIHTVKKPHTCNECGKAFTRQQYLSKHMKIHTSEKPYACNECGRAFAHRDTLMKHMKIHIGAKPHACNECGNTFTRQHNLSEHMKIHTGEKPYACNDCGKAFISRYKLSQHMKIHTGEKPHACNDCGKAFISPYKLSQHMKIHTSEKPFACNECGRAFARRQYLLEHINIHASEKLYACNQCEKSFARREVFPQKLLVLSEDDIMSRGERLQTKYKTDTDPTLHLELVSLRMGLEFEIAQLGSAYDLFIVFGKFEDWFCEKKILDPKDCSETYREEELMSDHEDHIKYAHSIECSPKQNLSLHEQTHSEECAVKCEEYHDEALFSVCNGLITYVCSICSIEFSSKQNLSLHEQTHTKETTIKCEECNLDFDCVSDYSHHQKNEHHIKKNQIVCLICGNTIKDRRCFYNHMRLIHREHFPCERCGATFRKHLDLKEHFVTYHNYKTYNICGRNLISLNAHITTHSGSKPFVCIDCGKEFLSSSRFTEHKRIHTGEKPLVCNEYGTAFSRYNMLAHMRTHTGEKQYAGNECGKVFNQKEHIFENSFYEQKILDPEVCSETYRKEELMSDHVDRRNYEHSIEFSSKQNLSLLEQTYSEESTVKCEEYHDEALFSVCNGLITYVCSICSIEFSSKQNLSLHEQTHTKETPVNCEECNLEFDCVIDYSHHQKNVHYINKNQMVCLICGNILEDHLCFYKHMRLIHKEHFPCERCGGTFRKPLDLKEHFVTCHNYITNNIYSRNLKSLNVHMKTHSGAKLGRPVVSTDCGKEFLSSSLFAEHKRIHTGEKPFACTECGTAFSKRYNMLTHMKTHADEKQYADNECEKVFNQKEHMLVNIKTHTGEKSVVCKNSRRDNLSEDMKIHTDGKTYVCNDCGKYFARQHNLSEHMTIHTGEKPYACNECGRAFARRNYLLEHMKIHTGEKPHTCNQCGKAFAYQQSLSMHMRIHTGEKPHACNQCGKAFAHRKSLTEHMNVHTGEKPHACNECGKAFAHRQSLSEHMKSHTDEKPYALEDPLYIVNFVKKESPEYDSEVSFEENLLSFQDDLTKYTCLICFTECSSRQNLSLHKHTHSKKISIKCEECNMDFACLNDYNHHQKDIHNINISQIVCYICGAILNSRSSFYSHMRSIHDENFPCVLCEKTFGNACDLKKHFVTYHDENCETCDLCGRNFKNLQAHMKSHSSAKPFECKYCNKTFSLNRYLNYHIKIHTGECRYVCQYCNKGFRTFSVLSEHKRTHTGEKPYACYDCGKAFSKRLNMLTHLKTHTGEKPHVCNHCGKAFSQKSNMLTHMRSHSSEKPFVCKICNKGFNLLQGLKFHLIAHSGEKPYECEICHKFFSRKTTLTRHKREVHLKEVTKARLKSKTDQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -