Csor007153.1
Basic Information
- Insect
- Cosmopolites sordidus
- Gene Symbol
- -
- Assembly
- GCA_031761425.1
- Location
- JARFXV010000169.1:648926-649246[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.5e-07 0.00024 22.2 0.0 5 38 3 36 2 41 0.91 2 2 5.5 2.1e+03 0.0 0.0 5 18 38 51 36 52 0.85
Sequence Information
- Coding Sequence
- ATGATGCTGAAAAAAGCTGTTGAAGCTGTACGAACGAAAAAAATGGATTATAACAATGCAGTTAAGTTATTTAACGTTCCGAGAGCTACTTTGAAAGATTACttaaaaaactttgaaaaatctATAGAAGATGTAGTTTTTgggaaaatgggaaaaaaaacagttttaccAGTAAAATTAGAAGAAAAGTTGGTAAACTATTGCTTGCAAATGGAGAAGAATTACTATGGTGTCACCACTTCTGATTTGAAAGGAATGGCCAGTTTCCAATTGCCATCAGGAATAATATTCctcacccattttcacagaccAAAAAAATGA
- Protein Sequence
- MMLKKAVEAVRTKKMDYNNAVKLFNVPRATLKDYLKNFEKSIEDVVFGKMGKKTVLPVKLEEKLVNYCLQMEKNYYGVTTSDLKGMASFQLPSGIIFLTHFHRPKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -