Csor005364.1
Basic Information
- Insect
- Cosmopolites sordidus
- Gene Symbol
- -
- Assembly
- GCA_031761425.1
- Location
- JARFXV010000120.1:248356-256098[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.3e-07 0.00031 21.9 0.0 3 39 12 48 10 52 0.83 2 2 0.91 3.4e+02 2.5 0.0 22 30 103 111 100 117 0.85
Sequence Information
- Coding Sequence
- ATGGCGAAGAGAAAGTACAATACTTGGAAACAGGAGAATATGGACAAAGCTTTATTGAAACATCGGAATTGTGAAATTGAATTTAATGAAGCATGTAGAAGATATAATATACCAAAGCCTACACTACGACGACATTCGAAAGAACAAGGAAATATAGAAGATTCCGCAGGAAACACAGTAGAAACGACTAGCCAGGCCATAGTTACATCGCAAGATCTTCATTCAAACAAAGAAGTGACTGATCAGACCGAAAATTATTCTCAATCCGTCAGGACTGAACTACAAACGGTATTTGAAACTCGTATAGCCGCCACTCACTACGACTTACCTAAAGCAAATATCTCAAAATCAAATCCTAGTGTCATTCAAGTATCTACGTTCCATCCTAAACCAAACACTGTTAATGCCCAATTTCCCCAATCGAGTCTATACACGAATTCTGATTATATTATAACTACAAATACGGATATAATGCATCCTTCTACTTCAACAAATGTAGAATACTCACACGATGTGTCCATCTctgataaaatacaaaatattaaacctttccCTAAATCTCAGACAAAAAGCTGCACTAAAAGAAAACGCATGAAATCTGAAATAATCAGTTTTCGTACAAATTAA
- Protein Sequence
- MAKRKYNTWKQENMDKALLKHRNCEIEFNEACRRYNIPKPTLRRHSKEQGNIEDSAGNTVETTSQAIVTSQDLHSNKEVTDQTENYSQSVRTELQTVFETRIAATHYDLPKANISKSNPSVIQVSTFHPKPNTVNAQFPQSSLYTNSDYIITTNTDIMHPSTSTNVEYSHDVSISDKIQNIKPFPKSQTKSCTKRKRMKSEIISFRTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -