Csor011998.1
Basic Information
- Insect
- Cosmopolites sordidus
- Gene Symbol
- -
- Assembly
- GCA_031761425.1
- Location
- JARFXV010000296.1:318692-319024[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.5e-09 5.7e-07 30.6 0.1 2 40 19 58 18 60 0.92
Sequence Information
- Coding Sequence
- ATGCCCAGgatttataagaagaaattaggaGTACGCCAGAACCGGAATTATTCTGACGATGTGCTCGCTCAAGCAGTAGCAGACATACAGAATGGTAAAATGTCAGCAAGGCAGGCTTCGCTTCACTACAAAATTCGTAGGAAAACACTGGACAATAAGATAGCACAGCGACATTCAAAAATTTTTGGTGGACAAACGATATTTTCgatagaagaagaaaaaactattttgcaTCAGATCTTAACGTGCCCAGATTGGGATATGCCGCTGGATTCCTTTGATATCAGATTAATTGTAAAAGAATATCTTGGTACCCTGGGACGTTTTGTATAA
- Protein Sequence
- MPRIYKKKLGVRQNRNYSDDVLAQAVADIQNGKMSARQASLHYKIRRKTLDNKIAQRHSKIFGGQTIFSIEEEKTILHQILTCPDWDMPLDSFDIRLIVKEYLGTLGRFV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00376196; iTF_00376176; iTF_00376190; iTF_00376221;
- 90% Identity
- iTF_00376196; iTF_00376176; iTF_00376221; iTF_00376190;
- 80% Identity
- -