Csor016557.1
Basic Information
- Insect
- Cosmopolites sordidus
- Gene Symbol
- bab1_2
- Assembly
- GCA_031761425.1
- Location
- JARFXV010000433.1:126289-131226[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.4e-13 2.8e-10 41.2 0.1 1 45 355 399 355 399 0.95 2 2 3.9 1.5e+03 0.5 0.4 6 18 464 477 460 479 0.81
Sequence Information
- Coding Sequence
- ATGGCTCAAGCCCAGCAATACTGTCTTCGATGGAACAACCATCGGTCAAATCTGCTTACGGTGTTCGATGAACTTCTCCAAAATGAATCGTTTACTGATGTCACACTAGCTTGTGATGGAGGAAGCCCGATTAAATGTCACAGAATGGTGTTAGCTGCGTGTTCCCCATATTTTCAGagtCTTTTTACTGAACTACCATGCAAACACCCCGTAGTAGTGTTAAAAGACGTAAAATATTGCGAAATCAAAGCAATATTAGAATATATGTACAGAGGTGAAGTAAATGTCGCTCAAGATCAATTGGCAGCTCTCTTAAAAGTAGCAGAAGCACTTAAAGTTAAAGGATTAGTTGAAGAAAACAGGTCCTGCAAAAGTCCAAAAGAAGAACctacattagtaaataattcACCTTCAATTTCAACGTCAAACTCCATTATTCATAATCCAGTTCACAGCAGCAGTAACCACTCACCACCCCATTCCACAAAATCAATGTACAAAGCTGCTTACAATACCTACGAAAGAAAAACCCAAGACCACAATTCCAGGATGAATTTACCAATTTGGGCTGTTCCAGGGTTGCCTCTTCCACCCCATACAGCATCGgTACCCAGTCCGACTCCTCATACTGCCGCAACCACTGCAGCTGCCATGTTGAGTAGCGCATACGAAGCTGTTAGCTCAGACATGTCACCATTAAAGCGGAAAAAGTTAAGCAGTTTACTGATGCAAAGAGATACGCCCATTTTAAGAACCGTCTTGGGGCAGGGTCAAGCAGATTCATCACAACCCGTCAGCTTGGTTTGCCATCCCGACAGTGGCGAACATACTGCCAATGAAGAAAGATTTccaaaaCACTTCAAAAATGAACCTTCTGAAGATGCCCAATCACCATACAGCGATTTTATGGAAAGAATGAATGATGAAGAAGAAAAGTCAAAATTGGCTATTCCATCGTCCTCACCCCAATCGCTTACGCCTAATGGAAGAACTGCAGTTAGTTCAGGTATAGCTACATATGTTCCACCTCAAAAACCCGAATGGAGAAGATATAAACTATATACAAGGGACCATATCATGTCGGCCATTGAAGCTGTAAGAACAGGAACATCTGCTTTACAAGCTGCTAAAAAATATGGAGTGCCTTCTAGGACTCTATACGATAAAGTAAAGAAATTAGGGATTACTACTAGCAGACCCTTTAAAAGAGGAACAAACGGAAGTTCCACCTGTGTTCAATATTCCAGTGGTTCACCTTACGGTGGACATCTtgcagaaaatgaaaatataaacaacaattCCGCTCTGTTGGAAGCAAGCACTTTTTTACAACACGCCTTAGATAGTAGAGGAGGTGATGAAAGAGAAGCTCTCGCAGCTATGGCTGCAGCTGCGGCGGCTCATGCAGTAGCGTCAGGTCATTCTACTAGTCCTAATAATATGGGACAAGCAAGAAGCCCCAGTCCCAGTCCCACTATGCTCAAATACATGCGACATAGCAGTCTAACACCATCACCAGCCCCTGGCAGTGATCACCATCACAGCGATCAAACTAACGGCAGTTCAGAAAGGGAACGTGATGAAGATGAAGACCAAGTAGAAGATTTGTCAATTAATAGAAAACATGAAGCTTTCGAGTCGAGAGTTATCATGGCTCCCATGAATCAAGTGTCCgccataattaaaaaagaagacACGCTAATCGATAGCATTAAAGACGATATAAGGAGAGAGATGCGAGTAGATGGAGAAGCTGATTAA
- Protein Sequence
- MAQAQQYCLRWNNHRSNLLTVFDELLQNESFTDVTLACDGGSPIKCHRMVLAACSPYFQSLFTELPCKHPVVVLKDVKYCEIKAILEYMYRGEVNVAQDQLAALLKVAEALKVKGLVEENRSCKSPKEEPTLVNNSPSISTSNSIIHNPVHSSSNHSPPHSTKSMYKAAYNTYERKTQDHNSRMNLPIWAVPGLPLPPHTASVPSPTPHTAATTAAAMLSSAYEAVSSDMSPLKRKKLSSLLMQRDTPILRTVLGQGQADSSQPVSLVCHPDSGEHTANEERFPKHFKNEPSEDAQSPYSDFMERMNDEEEKSKLAIPSSSPQSLTPNGRTAVSSGIATYVPPQKPEWRRYKLYTRDHIMSAIEAVRTGTSALQAAKKYGVPSRTLYDKVKKLGITTSRPFKRGTNGSSTCVQYSSGSPYGGHLAENENINNNSALLEASTFLQHALDSRGGDEREALAAMAAAAAAHAVASGHSTSPNNMGQARSPSPSPTMLKYMRHSSLTPSPAPGSDHHHSDQTNGSSERERDEDEDQVEDLSINRKHEAFESRVIMAPMNQVSAIIKKEDTLIDSIKDDIRREMRVDGEAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01107693;
- 90% Identity
- iTF_00376419;
- 80% Identity
- iTF_00376419;