Csor046142.1
Basic Information
- Insect
- Cosmopolites sordidus
- Gene Symbol
- X-element\ORF2_1
- Assembly
- GCA_031761425.1
- Location
- JARFXV010002091.1:115230-134084[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.1e-09 4.1e-07 31.1 0.0 1 39 383 422 383 426 0.90 2 4 2.2e-12 8.3e-10 39.7 0.1 1 39 437 475 437 478 0.95 3 4 7.7e-18 2.9e-15 57.2 0.0 1 45 492 537 492 537 0.98 4 4 1.1e-15 4e-13 50.3 0.0 1 39 544 583 544 587 0.94
Sequence Information
- Coding Sequence
- ATGGCAGATAACCTTAGAATTATGGAATGGAATGCCAATGGACTCTTGCAACACCAACAAGAACTGCAAGTAGTCCTAGATATGGAAAAGATTGATATATGCATCATTTCTGAGACTCATTTTACTAATGAATCATACATTAAACTCAAGGGATATAAAGTATACCATACCATACATCCCGAAAATACCGCCAAAGGTGGAAGTGCCATCGTAATTAAGGAATCAATCAAGCATCACCAAGAAATGGGATATAAAACAGAACAGTTTCAAGCTGCCTctgtaaacattaaaactaaaacatatgAGATCATAGTCTCCGTAGTTTACTGTCCGCCTAGACATGCtctgaaaaaacaacaatatttagacTTTCTAAATAGTCACGGATATAGGTTTATCATTGGAGGTGATATCAATGCCAAACACGTTCAGTGGGGATCCAGACGCTTAGAAAATCAAAACGCAACAAACGAAGAATCAAAATCAAAAGACTTGATATTAAAAGGCACAAGTGAAGATTCTAAAAGCATATTTGAGCACTCTGATATCGAACATGAAATGCCTATAGCTCTTGATGAAAACAAGAACCACAATCAAAAACGGCAGGGCAGACTTGAGGCAACCCAAGTCACTCCACTCAACATGAGCAGTAATGGTCTCATGGCGGGGCAGgcaattttttcaacttttgacTCGGATGATTTCCCCCCGGAACCACCTGCCCCCACCGCAGTCCCCGTTGGCCACGTGGACATGGCAGACCACACGGCAACCATGTTAACAAACGCACCCATCCATCGAACCGATCTATCTGACGCTACAACTAAATATACCATGGAAATAAAGAAAGAAGTGGATaTCAAATTTGAAACTTTGAGGTCATTTGATCAAGACAGTCTTCTGGAAATGGATTCTCACATGAGCGGCGATCATTCGATAGGTTCCCATGAAGACGTAGCTGATATGCGCCATCAAGGTATGATGAATCCAGACTTTACACAACTACAAGCAGGATTATCTAACCGAATAGATATGAACGATGCCGGTGATAACGGAGATTTATCGAGCATTAAAACAAATGGACACAACGACAATATGCACCAAAATAGTCAAAGACCTCACTCTGGAGGAGGACCGAAAACTTGGACGCAGGAAGATATGGACATGGCGCTAGATGCATTGAAGAACCACAATATGAGCTTAACCAAAGCATCAGCAACATACGGAATTCCATCCACAACTCTCTGGCAAAGGGCTCATCGATTAGGCATTGATACGCCCAAGAAGGAAGGGCCCACAAAGTCATGGACTGAAGAAAATTTGAACAATGCGCTTGAAGCACTGCGAACGGGTACCATATCAGCTAACAAAGCCAGCAAAGCGTATGgaATTCCAAGCAGTACCTTATATAAAATAGCTAGGAGGGAAGGAATAAGACTAGCAGCCCCTTTTAATGCCGCTCCAACTACATGGACTCCAGAAGACTTAGAAAAAGCTTTAGAATCTATTCGAACAGGTCAGACCTCCGTCCAGAAAGCCTCCACTGAATTCGGAATACCAACCGGTACTCTGTATGGTAGATGTAAGAGAGAAGGCATTGAACTATCCCGATCGAATCCGACACCATGGTCAGAAGACGCCATGGGCGAGGCCTTAGAGGCGGTGAGATTAGGTCACATGTCCATAAATCAAGCAGCCATCCACTATAATTTGCCTTACTCGTCGTTATATGGACGATTTAAGAGAGGAATCAAGTACGATTCAGATAACATAGAGGTACATCAAGAAAATAGTCAAGCTCACATGGACGTCCATCCGTTTGCCGGAATTGAATTCAACAACGGCCAACCGCACATCCAATACCACAGTCAACCAAACAGCTGA
- Protein Sequence
- MADNLRIMEWNANGLLQHQQELQVVLDMEKIDICIISETHFTNESYIKLKGYKVYHTIHPENTAKGGSAIVIKESIKHHQEMGYKTEQFQAASVNIKTKTYEIIVSVVYCPPRHALKKQQYLDFLNSHGYRFIIGGDINAKHVQWGSRRLENQNATNEESKSKDLILKGTSEDSKSIFEHSDIEHEMPIALDENKNHNQKRQGRLEATQVTPLNMSSNGLMAGQAIFSTFDSDDFPPEPPAPTAVPVGHVDMADHTATMLTNAPIHRTDLSDATTKYTMEIKKEVDIKFETLRSFDQDSLLEMDSHMSGDHSIGSHEDVADMRHQGMMNPDFTQLQAGLSNRIDMNDAGDNGDLSSIKTNGHNDNMHQNSQRPHSGGGPKTWTQEDMDMALDALKNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNNALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRTGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYDSDNIEVHQENSQAHMDVHPFAGIEFNNGQPHIQYHSQPNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -