Ctra043234.1
Basic Information
- Insect
- Cosmia trapezina
- Gene Symbol
- -
- Assembly
- GCA_905163495.1
- Location
- LR991046.1:12185120-12200754[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 5.9 8e+02 2.3 0.4 5 22 293 310 291 310 0.91 2 12 0.0096 1.3 11.1 0.2 1 23 320 343 320 343 0.92 3 12 0.044 6 9.0 0.6 2 21 381 400 380 401 0.92 4 12 5 6.8e+02 2.6 3.5 1 20 698 716 698 718 0.81 5 12 0.0095 1.3 11.1 0.2 2 23 758 779 757 779 0.95 6 12 0.87 1.2e+02 4.9 0.4 1 9 802 810 802 823 0.85 7 12 0.0014 0.19 13.8 0.2 2 23 900 921 899 921 0.97 8 12 5.9e-07 8e-05 24.4 2.7 1 23 927 949 927 949 0.99 9 12 2.1e-05 0.0028 19.5 0.3 2 23 955 976 954 976 0.96 10 12 0.0063 0.85 11.7 1.8 2 23 983 1005 982 1005 0.96 11 12 1.7 2.3e+02 4.1 0.1 1 20 1012 1031 1012 1031 0.82 12 12 0.0017 0.24 13.4 2.0 3 23 1044 1065 1043 1065 0.96
Sequence Information
- Coding Sequence
- ATGGCGGATACATCCAGAAAAAGGTCGAGAAAGTCGAAATTAGTGCCTCGAGACTGTGCTGTAGACGAAGGTGATCTTGAATTGCAGATTCCAGAGACGAAGTTACCTAAAAGCATGAAACTCACCACCTACAGACAACAACCATCAAAAAAGATAGTAAAGCCGCCAGAGCTAACCATTTCGAAACCAGAAGAAGTTTACGATACAAGtgtcctaaaaaaaatcaacgcaTCAGCTAAAGAAGACATTGAGGCACAATCTAAGATATCACCcagaaaatttgaaattaatatagaaGTAGAATCTTGTGATGATGACGAAGACGAATTTGCTGGAATTGAGACTCGCAAAGATGATGAGCGATTCATCACGACAAAACTACAAACCAAACCTATAGAACTGTCTCGTGAAAACATACTTGAAGCTGCCGATAATATACTCCAGACTTCAACGGATATTGCTGATAAAATCCTTAACGTATACGTTAGGAATACTATAGGTTATGAAGGTAAAAAGAATCTAGTATTTGATTGTCAGGAGAGGAGAATACAAAAAACATTAGATGAGTGGCGAACGTGGCAATTCCGTAGCTTTCACAGAGAAGCCCCTCTATTCTACAAATGCTATATCTGTATGAAGTCCTGGTGGCATTTAACAGACTTCCGCAATCATTTGTCTGCAGAACATGCTGATGATTTAACTGTTATAATTTCTTTGGAAAAATATGAAATGCATGAAGCAAATTTGATAGCACACCACAAAAAGCTTATTGTAATAAAAGATATATATACAGAAGGGCCGTGTTACCGCTGCGGTAAGGATTATAGTGCTCATGAGTTAGAGTCGAGGCTCCATCTGAAATATTACAAAAACAGCGGTTGCTCGAAACAATTTTTCAGCTGTATGGGTTTGAGAGACCACTTGAGTACCTGCCCTGTCTGTGATCAGGATAAACCTTTCAAATGTGATATATGTAAGTCAAGATTTAATACAGTAGAGGAGTTAATCGACCATTTAGTATTGTCTCATTCTGTTCGGTCCGATGTACCGATAATGGCTCACTATAAAAACTGCAAGCGTTGCTTGGAAAGGTATTCCTGTCATTATTTGCATAAATGTAACCAAAAGGAACCTCATTGTGAGTGTCCCAATTGTTTAAAGAGCTTCTCAAATATCATGTCTTTCGATATTCATATGGAACGGTCCAATAAACCGTACAAATGTGAAGTTTGTGGGGCGGAGATGATGTATAACTGTAAGAAATATGAACATATGTTGGAACATACAGACAAGTATATGCTAGTAAGGAAATGCGTTACGTGTGAGGGTTTGAACGTGTTTATAAATAATCAAGATGCAGTAGCACATCGCTCGTTGAAACATGACTTCAGAGAAATGAAACGTCAAACCTATTTTCCTAAAATTATAGTACCGTCTTCCTGCGTATATCAAAGTTTAGCAGACTCAGTATCCAAGGATCAGGAATTGTTATCAGAAGAGCAAGAATCGGTACCTGAACAAGAAGAAACCAAGGAAGAGAAATACTCCATACCTGTTAAAGAGGAACCCGTACTGAAAGAAAAAGAATTGGcattgaaaaaaaagaaatttgtaTCAAAAAGTGAAAGAGAATCAGTTTTAGTATGTGAACAGAAATTGTTGCAAGCAGAACTTGAATCAGCAACAGAATTTTTATTGGGAACTGTTGCTGTCAAACAAGAGCCAGAAGACTCGGAAGATAGCCCACGGCTTGTAATCAAAGAAGAAATATTCGAAGAATTTGAAAACCAATTGCATGAAAACGATGAGCAAATTGAGAATTATGAGCACAAAGTAAGTGTCAAAGAAGAATATGTGGAGGAAGAGTTTGATGAATATGAAGGAGATATTATCAAACTCAACTTCAATATAGAAGACTTATTAGTGAAACAAGAATCAAATCAAGAAGATAACGATTATACTTTAGAACACACAGAAGAGAACCAAGAATCAGAAGGTAACGATGATTCAGAAGAATTTCCACAAAGAAGAGATTCCATGCTAGAACCAGAAGTTATTATAGATGGgaataagaaaaaaatcagaaaagtATACAAATGTACTAAATGTGGATTCACAGCAAAACATAGACAATATAAACACCACATAGACTATGACTGTGGTCATAACCCTATGAGGCATAAAAGCTATACATGCACGAAATGTCATAATAAATTTATGtctatgaaaaaatatttgacacatTTCAAAGAACATGGATACAAACACCTTTCTTGTCCTGATTGCTTAAAAGAATTTGGCACATACACAAATCTTGGACAACATTTAACTCAACatgtaaaacaaaattttgtccGAGTTAAATTGATCACACATGCTGGTAAGGCCATGACTAAACCTGATTATCAGTGTAAAAAGTGTGGAAAAATTATAGTTATTgataaattttttgaacattggGAGTTGCATATAAATGCACAGCCTACACACTCTATTAAGGTGACATCGAGACCGAAGCGGGAGCATGGAGAATTGCATGAAACTATTATAAAGGAGTGCATTGCCCGCTTATCGAAACAGCCAAAAGAATGCAACCATTGTCATCGTTGGTTCAAACGAATCAACGAATGCAAGAGACACATCATTGAACATCTACTAGCTGACGCTTACAACCAAAAACACATCTATAAAGAACTCAAATGCCAAATCTGTGAAGAAGGTTTTGATGTACCGGAGAAATACAAACAACATATGCGAGACCATGCCTCGCTACCCGTGTATAAGTGTGAACTGTGTGACCGTACGTTTAGTGATTCAAGTAACTTTACTAAACATAAAAAAGTCCATAATTTGACAGTGATTGTCTGTGATCTGTGTGGTAAAAAGTTCCAGTCGAAAGTGTCTTTGGAAAAGCATATTGAGaaacacaaaaacacaaatccAATTACCTGCAAGGTTTGCAACAAAATCTTCTACTTTGACACTTCATACCGGCGCCACGTCAGATACTTTCAcgaaaaaacctttttcggttACCGCTGTGTTATCTGCAGTCAACGTTTCGACAGTATAAGATTGAAGTGGGACCATATGTGGGAGGTACATAAGGAAAGGAAGCAGAAGGCAGATTGTCCTATATGCCATCAATCCTTCAGGAAGTACACCGATGTGCGTCGCCATGCAAGGCAAAACCATTTGACGGAAGTGTCagttttaaatgtaaaaaaaaattcaatgaaATCCAATTTAAATATTGATAAGTATTTAAATGATCCTACTAAGATAAAAACTGGGAGGATGGAGACTTTGGTTGTTTATGATTCCGATTGA
- Protein Sequence
- MADTSRKRSRKSKLVPRDCAVDEGDLELQIPETKLPKSMKLTTYRQQPSKKIVKPPELTISKPEEVYDTSVLKKINASAKEDIEAQSKISPRKFEINIEVESCDDDEDEFAGIETRKDDERFITTKLQTKPIELSRENILEAADNILQTSTDIADKILNVYVRNTIGYEGKKNLVFDCQERRIQKTLDEWRTWQFRSFHREAPLFYKCYICMKSWWHLTDFRNHLSAEHADDLTVIISLEKYEMHEANLIAHHKKLIVIKDIYTEGPCYRCGKDYSAHELESRLHLKYYKNSGCSKQFFSCMGLRDHLSTCPVCDQDKPFKCDICKSRFNTVEELIDHLVLSHSVRSDVPIMAHYKNCKRCLERYSCHYLHKCNQKEPHCECPNCLKSFSNIMSFDIHMERSNKPYKCEVCGAEMMYNCKKYEHMLEHTDKYMLVRKCVTCEGLNVFINNQDAVAHRSLKHDFREMKRQTYFPKIIVPSSCVYQSLADSVSKDQELLSEEQESVPEQEETKEEKYSIPVKEEPVLKEKELALKKKKFVSKSERESVLVCEQKLLQAELESATEFLLGTVAVKQEPEDSEDSPRLVIKEEIFEEFENQLHENDEQIENYEHKVSVKEEYVEEEFDEYEGDIIKLNFNIEDLLVKQESNQEDNDYTLEHTEENQESEGNDDSEEFPQRRDSMLEPEVIIDGNKKKIRKVYKCTKCGFTAKHRQYKHHIDYDCGHNPMRHKSYTCTKCHNKFMSMKKYLTHFKEHGYKHLSCPDCLKEFGTYTNLGQHLTQHVKQNFVRVKLITHAGKAMTKPDYQCKKCGKIIVIDKFFEHWELHINAQPTHSIKVTSRPKREHGELHETIIKECIARLSKQPKECNHCHRWFKRINECKRHIIEHLLADAYNQKHIYKELKCQICEEGFDVPEKYKQHMRDHASLPVYKCELCDRTFSDSSNFTKHKKVHNLTVIVCDLCGKKFQSKVSLEKHIEKHKNTNPITCKVCNKIFYFDTSYRRHVRYFHEKTFFGYRCVICSQRFDSIRLKWDHMWEVHKERKQKADCPICHQSFRKYTDVRRHARQNHLTEVSVLNVKKNSMKSNLNIDKYLNDPTKIKTGRMETLVVYDSD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00374709;
- 90% Identity
- -
- 80% Identity
- -