Ctra042140.1
Basic Information
- Insect
- Cosmia trapezina
- Gene Symbol
- -
- Assembly
- GCA_905163495.1
- Location
- LR991045.1:16697759-16719295[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0025 0.34 12.9 5.6 2 23 553 574 552 574 0.96 2 16 0.7 94 5.2 2.0 2 23 578 599 577 599 0.97 3 16 0.015 2 10.5 2.0 2 23 685 706 684 707 0.95 4 16 0.00013 0.018 16.9 2.0 1 23 713 736 713 736 0.97 5 16 0.032 4.4 9.5 0.2 1 20 740 759 740 761 0.93 6 16 0.0055 0.75 11.9 1.7 1 21 769 789 769 792 0.96 7 16 1.6 2.1e+02 4.1 1.0 1 23 797 820 797 820 0.85 8 16 0.00046 0.063 15.2 0.1 2 23 833 854 832 854 0.97 9 16 0.013 1.8 10.7 1.6 1 23 860 882 860 882 0.98 10 16 0.61 82 5.4 2.4 2 23 888 908 888 908 0.96 11 16 0.00054 0.073 15.0 1.7 2 23 914 935 914 935 0.97 12 16 0.073 9.9 8.3 0.1 2 23 940 960 939 960 0.95 13 16 4.6e-05 0.0063 18.4 3.1 1 23 1007 1029 1007 1029 0.98 14 16 0.002 0.27 13.3 1.4 2 23 1035 1056 1034 1056 0.96 15 16 0.085 11 8.1 0.8 1 23 1062 1085 1062 1085 0.93 16 16 0.0017 0.24 13.4 0.7 1 23 1090 1113 1090 1113 0.96
Sequence Information
- Coding Sequence
- ATGTCGAATGCAAGCCAGATAAGTCTGTGCGTGTCCAAGATCGCCACTAATCGTGGACCACTATCCATATCAAAATTTACCCACCCCCATAAAATACCCTTTAGAGAAGTTGAAAATTTACCATCTACATCTAAAGAATCTAGTGGTAGTGCAACTCCATCAACATCAGACAAACATACACAATCAGAAGAAAACGACAAGAACTCAACTGACGAGGATAATCTCCCGAAGAAAAATCGCGAATCAGCCATATGTTCTGGACCAGAATCTCTACCAGAATTTACTTCCAAAACCCGAGAACCATTAGCAGAAATTGAAAATGTGCCATCACAAGAATCTAGTTCTAGAGCAACTCCATCAACATCAGGTAAACATACACAATCAGAAGAAAACGACAAGAACTCAACTGACGAGGATAATCTCTCGAAGAAAAATCGCGAATCAGCTGTATGTTCTGAATCTAGTGGTAGTGCAACTCCATCAACATCAGACAAACATACACAATCAGAAGAAAACGACAAGAACTCAACTGACGAGGATAATCTCCCGAAGAAAAATCGCGAATCAGCCGTATGTTCTGGACCAGAATCTCTACCAGAATTTACTTCCAAAACCCGAGAACCATTAGCAGAAATTGAAAATGTGCCATCACAAGGTCTTGAAAAGATGGACAGTTTCAAGTTGAAGCTCAAAAATGTCCTTCACAGTACAAGTTATTGTGGGTTATGCTTGGAAAATGACGTTAATATTAGCACCATTAACGAAAATCTGGAGATCATAGTGAATGAACGGACTCACACGAAAACTTTGAAGGCTATAATTGATGTAGTGTTTAAAGAGAAACCCACACCGAGGCGTAACCCGCGGCGCACCAACGTCCCCGGGTATAAACGCCTCCTAGCTTCACTACTAGCTAGGCACCTTTCAAGGGTAGCCATAAGAGATCAGGCACAATTAGAATATACCGTGACTAAACTATCAGAATACCTAATTGAAGCATACCATGCATGCTGCAAGCTAAGGGCGCCACAAACCAAGAAGGATAGGAACCCCTGGTGGAATGCCGAACTTGGTAAACTCAGAGATGCACTACGTAAGCAATTTAACAGAGCTAAAAACACTAGACTTCCGGAAGACTGGGAGGTATACAAGGAGacacaatacacatacaaaaagAAGATCAGAATTGCCAGGAGAGCTGCCTGGCGGAAATTCTGTGAATCCATTGAAACGAACAATGAAGCCGCAAGGACTCATTGCACCCTAGCAAGTTCACTCATATGCAATAGTTGTGAAGAAAAACTGATTCAGTCATATATTTTCATAGAAAATGCAAAGGAAACATATAAGATATTAGACAACTATGTTAACGATTTGTTTAGCAAATCAGATGATATTTTCAATAATTTGCCGGAGTCAAGCATTGGAAGTACAAATGTTGTTATTGTATTAGAAAATAATATCCATGATCCTCCTGATAAAAGGAAAATAAAAGATGAGTTTAACATAATAGCGGAAGAAAATAATGAAATCTTGGAAGCAAGAAAAGAATTTACtccaaaaagaaagaaattcaAATGTGTGAAATGTCTAGTATTGCTACCGTCACTCAGAGCGTTAAAGATGCATAGAATGAAATGTAAGAAGCAGATATTACGATGTAGACAATGTTTTaggacatttaaaaataaacaacatttaaaTGTACATTACAAACTGCATTTCAAAGTGAAATGCAAATTTTGTCCTGAAATACTTCATAAAAAGGAATTACTGGACCATCTTAAAACTAAACATGGAGATTCTTTACTGAAATGTTTGAAATGTGAACTGTTTTACCCCTTAAAAACTTGTCAAACTCACACTAACGTCTGCcaacaaataaaagaaaaaaaacctcaATGCTTGATGTGTCTAAAGACCTATACTGAGAAGGAATTTAAGTCCCACACCTGCAAGTACGGCTGTACAGAATGTACTGAAATACCTTGCATGCATTATAAGTATTTGAAGTCTTATAGAGAACAGACTTTAAATAACGCATACAAGATCAAATGTGTTGACTGCTACTATGTTTGTGCAAGAAAAGAGAATTTACTTGGACATGTGAATAAGcatcatttaaataatcatccataTACTTGTCATAAATGCGGACAAGAGTTTTATTCTAAAGTAGTTTTAAAAGCTCATATTCTTAGGTTCCatgaaaactgttttgtgtgcCAGTATTGTGATTCAGAATTTAGAAATATCAACAACTACGAAAGTCATGTAATATCCTGTGAGGATATCAAAAGGAAGTTTACTTGTGCCAATTGTCCAGCCTCTTTTGATTCCTACGATGGTTTGAAGAACCATATGAAATGTAGACATAGCTCGGATATTTTCCCATGTGGCCTTTGCAATAAAAAGTTCCTGAAAGATTCTAAAAGAAAAGAACATATGGTTAAAGTCCATAGCAGTATCAAAATTAAGaataaagataaaaatgtaGAATGTGTTGTGTGTCAAGAGAAGTTTGGTGATAAAGGAGAATTGCTGCAGCATATGAAATCTCATGGTCCGCATACTATGTATCCATGCAGAATATGCAATACAGAGTATCAGACCCTGAGACAGTTTCGGGCACATAATCGCAAACACAACGGACCATTCGCTACATGCCATGTTTGTGGTAAACAGATGAGAGAAATCCTACTAAAGAAACATCTGACTACCCACTCAGATTCTGTAGAAACATGCAAGACTTGTGGCAGGTCTTTTCAAAACATAACTCTACTAAAATACCACCAGAAAGTTCATTTAGAAAGTGTCCCATGTCCTAAATGTAAGAAAATGATCAACCCAGCACGACTACGGCGGCATTGGAGAGGGCATCTAAAGGAAGAGAATCCTGCTCGAAAAGGAATTAGGAAACAACAGCCAAACTTGAAATGTGAACTGTGTGAGTATAAGACATGGAACAACACACTTCTAGAATGTCACATGAATCGCCATCATTTGAAAATAAAACCATACGTCTGCCATATATGCAGCAAAGACTTCATAGGAAAACATTTACTGAAAAAGCATATTGAAACCCATGACATGAAAAGCGTTGTCTGTATGGTGTGCTTGAAGAGTTTTGCCAACTCAACCTGTTTGAAAATGCATTTGCGTTTACACACAGGAGAAAAGCCTTTCACTTGTGAAATATGTGGGGACCGATTTCGGTCATCAAGCATTATGAACGTACACAAGTTAAAAAAGCATTCCGGCAAGAGTTATACTTGTCCGTTATGTTCAAATAAGTTTTATACTGTAAGAGATTTGCGAAGACACGTGATTAAAGTGCACTGGAAGCAGAAAAATAAGAAGTTTGACCCTCGAGAGTTGAAAGGGCTAGAAAAAGAACATTATCATTTGTTTCATGATGGTAGAAGAGTTAAAGTTGCCGACGAAGATGTCGATTTTTATATGCCTTGTTGA
- Protein Sequence
- MSNASQISLCVSKIATNRGPLSISKFTHPHKIPFREVENLPSTSKESSGSATPSTSDKHTQSEENDKNSTDEDNLPKKNRESAICSGPESLPEFTSKTREPLAEIENVPSQESSSRATPSTSGKHTQSEENDKNSTDEDNLSKKNRESAVCSESSGSATPSTSDKHTQSEENDKNSTDEDNLPKKNRESAVCSGPESLPEFTSKTREPLAEIENVPSQGLEKMDSFKLKLKNVLHSTSYCGLCLENDVNISTINENLEIIVNERTHTKTLKAIIDVVFKEKPTPRRNPRRTNVPGYKRLLASLLARHLSRVAIRDQAQLEYTVTKLSEYLIEAYHACCKLRAPQTKKDRNPWWNAELGKLRDALRKQFNRAKNTRLPEDWEVYKETQYTYKKKIRIARRAAWRKFCESIETNNEAARTHCTLASSLICNSCEEKLIQSYIFIENAKETYKILDNYVNDLFSKSDDIFNNLPESSIGSTNVVIVLENNIHDPPDKRKIKDEFNIIAEENNEILEARKEFTPKRKKFKCVKCLVLLPSLRALKMHRMKCKKQILRCRQCFRTFKNKQHLNVHYKLHFKVKCKFCPEILHKKELLDHLKTKHGDSLLKCLKCELFYPLKTCQTHTNVCQQIKEKKPQCLMCLKTYTEKEFKSHTCKYGCTECTEIPCMHYKYLKSYREQTLNNAYKIKCVDCYYVCARKENLLGHVNKHHLNNHPYTCHKCGQEFYSKVVLKAHILRFHENCFVCQYCDSEFRNINNYESHVISCEDIKRKFTCANCPASFDSYDGLKNHMKCRHSSDIFPCGLCNKKFLKDSKRKEHMVKVHSSIKIKNKDKNVECVVCQEKFGDKGELLQHMKSHGPHTMYPCRICNTEYQTLRQFRAHNRKHNGPFATCHVCGKQMREILLKKHLTTHSDSVETCKTCGRSFQNITLLKYHQKVHLESVPCPKCKKMINPARLRRHWRGHLKEENPARKGIRKQQPNLKCELCEYKTWNNTLLECHMNRHHLKIKPYVCHICSKDFIGKHLLKKHIETHDMKSVVCMVCLKSFANSTCLKMHLRLHTGEKPFTCEICGDRFRSSSIMNVHKLKKHSGKSYTCPLCSNKFYTVRDLRRHVIKVHWKQKNKKFDPRELKGLEKEHYHLFHDGRRVKVADEDVDFYMPC*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -