Ctra044273.1
Basic Information
- Insect
- Cosmia trapezina
- Gene Symbol
- -
- Assembly
- GCA_905163495.1
- Location
- LR991047.1:8032259-8042159[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.28 37 6.5 0.8 1 23 276 298 276 298 0.96 2 9 0.019 2.6 10.2 0.1 2 23 366 387 365 387 0.94 3 9 0.047 6.4 8.9 0.7 1 23 391 413 391 413 0.96 4 9 0.003 0.4 12.7 1.7 1 23 419 442 419 442 0.85 5 9 0.047 6.4 8.9 1.1 2 23 449 471 448 471 0.91 6 9 1.5e-06 0.00021 23.1 1.3 1 23 477 500 477 500 0.98 7 9 5.8e-05 0.0079 18.1 1.8 1 23 506 528 506 528 0.98 8 9 1.7e-06 0.00024 22.9 1.8 1 23 534 556 534 556 0.99 9 9 4.4e-06 0.00059 21.6 2.8 1 23 562 584 562 585 0.96
Sequence Information
- Coding Sequence
- ATGGCTACTGTTAAGAATAACGGGCCGATTATAGACCCAGCCTTATGTCGATGTTGTagagcaataaaaaaatgtcgAGTGCTCACAGCGGAGTATACTTGGATGGAGAAAAAGGAAATTTATGCTGATATGGTTATGGACTGCTTCGGAATACTGCTATCACATGTCGATGACAATGAGAAAGACTGCGGTGTCTGCGCGACGTGTGTGGTACGTCTACGGGACGCGTGCGCGTTCAGGCACCAAGTGCTTCAGTGTGAGGAGCTGTTCCTTAGCGCTAAGCTTGAAGATAAGGATGCATTAGCAGAACTTACAGAACCGAAGATACACAAGCCACAAATGGACATAGAACTAAAGATTGAGCCTAAAGACGACTGCAGCGATGTCTCCGGCGGGGCCGACCATGACGACGATAATATGTCTCTAGATTACCCCATTACAGAAGCTGTTGAAGACCATAACCATATAGATGAAGCAGAATCAAAGCCTCCTAAAGATGAAGATTCTTTAGAACAACCAGAGTTAACtctagatgatgatgatgatgagagcGACTGGTCGGCGTCTTCCTCGGACTCTGATAAACCCATCAAGAAGAAGGCTAAGAAGAAAGGCAAGACTAATGGAGCGGGAAAGAAGAAGAAGGTTACAGCTAAGAAGCAGAAAGCTGGAACATCAACAAAGAAATCACCGAAAACTGTAAAGAAACCGCCCGTTGAGAAGAAAAATAACTACGACCGAGATTTAGACTGTATGTCCGAGGAGAACCTCCTCACTATCATACAGTATTCATACGTGTGCCCCTTTAAGAATAGAAGAAACAACTATTACTGTTTTTACTGCAAGGATTACTACCCGAAACCGGAAGATTTGAGAGAGCACACCGTTTCACATGATACAAAACCATTCCAACTTTTAATGGGTTATAAAAAAATGATCAAAATTGACATCACAAGAATAGACTGCAGACTATGTCCCACAAAAATCGACGATTTAACCGTTTTTAAGCAACACATAGACCAGGTTCACGGGAAAAAGATATATTTTGAAGCGCCTGACAAAATGTTGCTGTACAAACTAACGTGGAATGATTTGGTATGTGTCATGTGCAATAATGTCTTCGAAGATTTTAATACGTTAAACACACATATGGTTGAGCATTTCAGTAACTACACCTGTGATGTCTGTGGAGTATGCTTCCTTGAAAAACCTCGCTTAGATGCACATTTAAAAAGACATAAAGACGATGAACGACATACTTGCGAAGTCTGTGGAAAAGTATTCAAGTCGAACCATTATAAGGACATGCATGTCGATATTGTGCATAAGAAAAAGGCTATAATTCGATGTCCGAGATGTGATGAATGTTTCATGTCCTACGCTCTCAAAAACAAGCATTTAACAGAAGCTCACGGACAAAAACGGACGTATCCATGCAATTTATGCGATAAAGTGTACAACAGACAGAAAACTTTAACGGAACATCAACGGAGGAATCACcaaaaagtattaaaacatcagtgtgaatattgtgaccAAAGGTTCTACCTACCTTCTCGATTAAAAGAACATATGGCAACACATACAGGCGAGAGGAACTTCCGGTGTGAGTATTGTGAAAAAAGTTATCCTAGATTGAAGTCTTTGCAGTACCATATACGGACACATACGAATGACAGACGGTACAGGTGTCACATATGTGGGCAGGCCTTTATACAGAATGCTAGTATGAAGTCTCATATAAAAAGTCACCATCCAGAGTGTGATATTGAGGGAtgctacttttaa
- Protein Sequence
- MATVKNNGPIIDPALCRCCRAIKKCRVLTAEYTWMEKKEIYADMVMDCFGILLSHVDDNEKDCGVCATCVVRLRDACAFRHQVLQCEELFLSAKLEDKDALAELTEPKIHKPQMDIELKIEPKDDCSDVSGGADHDDDNMSLDYPITEAVEDHNHIDEAESKPPKDEDSLEQPELTLDDDDDESDWSASSSDSDKPIKKKAKKKGKTNGAGKKKKVTAKKQKAGTSTKKSPKTVKKPPVEKKNNYDRDLDCMSEENLLTIIQYSYVCPFKNRRNNYYCFYCKDYYPKPEDLREHTVSHDTKPFQLLMGYKKMIKIDITRIDCRLCPTKIDDLTVFKQHIDQVHGKKIYFEAPDKMLLYKLTWNDLVCVMCNNVFEDFNTLNTHMVEHFSNYTCDVCGVCFLEKPRLDAHLKRHKDDERHTCEVCGKVFKSNHYKDMHVDIVHKKKAIIRCPRCDECFMSYALKNKHLTEAHGQKRTYPCNLCDKVYNRQKTLTEHQRRNHQKVLKHQCEYCDQRFYLPSRLKEHMATHTGERNFRCEYCEKSYPRLKSLQYHIRTHTNDRRYRCHICGQAFIQNASMKSHIKSHHPECDIEGCYF*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00041202;
- 90% Identity
- iTF_01064993;
- 80% Identity
- -