Ctra042923.1
Basic Information
- Insect
- Cosmia trapezina
- Gene Symbol
- -
- Assembly
- GCA_905163495.1
- Location
- LR991046.1:7084666-7090412[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.00061 0.082 14.9 4.9 1 23 279 301 279 301 0.97 2 8 0.00079 0.11 14.5 7.3 1 23 306 328 306 328 0.99 3 8 6.4e-06 0.00086 21.1 2.4 1 21 332 352 332 353 0.96 4 8 0.00028 0.038 15.9 5.0 1 23 372 394 372 394 0.93 5 8 4.9e-05 0.0066 18.3 4.0 1 23 400 422 400 422 0.98 6 8 4.5e-07 6.1e-05 24.7 4.7 1 23 428 450 428 450 0.99 7 8 1.1e-06 0.00015 23.5 9.3 1 23 456 478 456 478 0.99 8 8 1.5e-06 0.00021 23.1 9.4 1 23 484 506 484 506 0.99
Sequence Information
- Coding Sequence
- atggcgttcaacgtgttaaagAAAGTTTTGTTGCAGTTTGTGACTGAAGACAGTAGACCGATGCTCGCTTGTTTCTTCTGCTACACTAAACTGAAGCAATGCGGCCAGTTGCAGAGGAAATGTCGGGAAGCCGAGCAGTTCTTTGCTCAGATGTTGAAGAATGATGAGcTAAAACCTCTAACAAACCGAGGCCACTCAGAATTTGTTGGTGGTTTTGTTAAAACCACTATAGAGAACATGAATATAGTTGGTGATGGTCAAACTGACAGCGGGACTATTGAAATAGAAGTACCAGCGGTTTCTGAGAAACAATGTGACATTGTTCAGATCAAGGTGGAGTGTCAGAGTGATTTGAGTGATGagtTGGAACATCTAGATAATAGCTATCCAGATATAGCAGATATACCACCACACCAGTCTGAATCTGATTCAGAAGGTGATGTACCTTTAATGGAGTTTAAAACTGAAGTGGTAGTAGTGAAAGAAGAAGCAGAAGAACAAGAAGTGTCTCAGGAGAAACAAGGAGCCAAGAACATGAAAAGGGCGCTCGTCTTGAAGAAATCAGAACTATTAGATTTTACAACTACAGCCAAGCAACAGAAAACTGGAGCCTCAGACTCGAAAACTATCCGGCCAACTCAAACTAGCACGTCCAAATCTGTTACTAAATTCAGAGAGCCCGTCACTATTACAATACCAACAGTTAATGAACACTTTACAGAAGTTAAAACTAATTTAATAGATTGTATTCATTCCGCTATAGATACGAGTTTCtgtaataaaagtgattttaacgTATTGAATAACGAAGGCATTGAGAGAGAAGAAAATGTTTTCAGATGTGAAATATGTCAGAGTTGTTTTAGTGAAAATTGTAATTTAAGAAAACATATTCTTGAACACGGTGAAAAACCTTTCAAATGTCATTACTGTCAGCGTGGTTTTGACGCAAAATGTCATTTGGAGAAACAtgttcgtatacacactggtacTTTTAAATGTGATGAATGTCAGCGTTATTTTAGTGATAagagtaatttaattaaacatatATGTCAGCAAGGTTTTAATCGATTCAAGCAACATTATCGCGCGCACACCAGTGAAAAACCTCACAGTTGTATtatatgtcagcgtagttttactcATAAAGCTTCTTTAAACAATCATCTTCGTAGACATACTGCTGAAAAACTCTTTAAATGTTCTGTATGTCAGCGCAGTTTCACTCATAAGCGGTCTTTGGACATGCACATTCTAAAACACACTGGTGAAGAACCTTTCAAATGTGAACAATGTCAAAGAGGTTTTACTCAAAGTTCACATTTGAAGCAACATCTTCGTACTCACACTGGTGAAAACCCTTACGAATGTGAACACTGTCAAAGATGTTTTACTCAAAGTTCACATTTGAAACAACATCTTCGTactcacactggtgaaaaaccttacaaatgTGAACACTGTGAAAGATGTTTTACTCAAAGTTCACATTTGAAACAACATCTTCGTATGCACCCTggtgacaaataa
- Protein Sequence
- MAFNVLKKVLLQFVTEDSRPMLACFFCYTKLKQCGQLQRKCREAEQFFAQMLKNDELKPLTNRGHSEFVGGFVKTTIENMNIVGDGQTDSGTIEIEVPAVSEKQCDIVQIKVECQSDLSDELEHLDNSYPDIADIPPHQSESDSEGDVPLMEFKTEVVVVKEEAEEQEVSQEKQGAKNMKRALVLKKSELLDFTTTAKQQKTGASDSKTIRPTQTSTSKSVTKFREPVTITIPTVNEHFTEVKTNLIDCIHSAIDTSFCNKSDFNVLNNEGIEREENVFRCEICQSCFSENCNLRKHILEHGEKPFKCHYCQRGFDAKCHLEKHVRIHTGTFKCDECQRYFSDKSNLIKHICQQGFNRFKQHYRAHTSEKPHSCIICQRSFTHKASLNNHLRRHTAEKLFKCSVCQRSFTHKRSLDMHILKHTGEEPFKCEQCQRGFTQSSHLKQHLRTHTGENPYECEHCQRCFTQSSHLKQHLRTHTGEKPYKCEHCERCFTQSSHLKQHLRMHPGDK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -