Ctra042059.1
Basic Information
- Insect
- Cosmia trapezina
- Gene Symbol
- -
- Assembly
- GCA_905163495.1
- Location
- LR991045.1:15097162-15101437[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0028 0.38 12.8 5.9 1 23 156 179 156 179 0.97 2 17 0.00037 0.05 15.6 0.5 1 23 188 211 188 211 0.97 3 17 0.015 2.1 10.5 0.4 2 23 224 246 224 246 0.97 4 17 0.0013 0.18 13.8 1.3 1 23 255 278 255 278 0.96 5 17 0.00034 0.047 15.7 2.9 1 23 290 313 290 314 0.96 6 17 0.00015 0.021 16.7 0.7 2 23 342 364 341 364 0.97 7 17 0.0015 0.2 13.6 1.2 2 23 374 396 373 396 0.96 8 17 0.087 12 8.1 1.2 3 19 402 418 400 421 0.92 9 17 0.00065 0.088 14.8 0.5 2 21 426 445 425 448 0.94 10 17 0.12 16 7.7 1.9 3 23 458 479 457 479 0.93 11 17 0.00087 0.12 14.4 3.5 1 23 484 507 484 507 0.93 12 17 0.00033 0.045 15.7 2.8 2 23 519 541 518 541 0.97 13 17 0.19 26 7.0 0.4 1 23 568 591 568 591 0.92 14 17 3.4 4.6e+02 3.1 0.5 2 23 598 619 597 619 0.86 15 17 1.2 1.6e+02 4.5 1.8 2 23 625 646 624 646 0.96 16 17 0.021 2.9 10.0 0.1 1 23 712 734 712 734 0.97 17 17 0.091 12 8.0 1.9 1 23 740 763 740 763 0.97
Sequence Information
- Coding Sequence
- ATGGATTTAGATGTTAAGGTGAAAATAGAAAATGATGACACAAGAAAAGATCCTACCTCATTTTTGCCAGAGGAACCAATGTCTTATGAAattaagaagaaaaagaagaagaaaaaaaagaagcaaGAAGACCCTTTTAAAGACATTGATGACAAAATGAGTGTCAAGATTGAACCAATAACTCTGTTGGATCCGGAGGTTAAAATAAAGGTTGAGGATATAGAAGTGGAATTGGATTTTAATGATTTTGGAGACAACGGCCTGATTCACGAAGGTCATCACAACGACGGAGACGATAGTCAAGAACCAGCCGTGAAAATAGAGCCGCAAAACCACGACGCCGTACTTCTCACATTCGAGAGTGTCATCAACGAGAAGAAACCATTTGTCGCCGATAGCAGTGAAATGTTTCAAATTTCGAAGAATGATCTGCTAGTGCCACTGCCAACCAAGCAAGCTCCAAACCATGTCTGCAAAGTCTGCCATCTAGTCTTTCAATCACAAAAAACACTACGAATGCATCAGAAAAGAAAACACAAGTCCTTCAGAAAGTCCTTCAAACATGTTTGTGATTACTGTGGCATGGCGTACGAAATGAAGAACAGTTTAGTAGCGCATATTAAGAGGAAACATGGACCTGATTCAAGGCCAGATGATAGAGAGGAACGGACTTGTGAAATATGTGCTTTGGTGTTCAAAGGAATGGCTCGCTTACGCATGCATATGAGAAGAAAACATGACTCTTTCCAAGAATCTTTTAAACATGTTTGCAAAGACTGCGGTTTAACTTATGATAAGTACAGAAGTTTGATAGTCCATGTACAACGTAAACATTCAAATAATCAGAAACCTGAAATCAATCAATGGTACAACTGCCCGTTCTGTCCTAAGATATTTACGAAAAGAGAAACTTACGCTAGACACGTGCAGAGGAAACATCATGTGTCAGACGaaagtataaaacaagaaaataatacTGAAAATTATTTGGAGAATTGTAAAAATGAAGAAACTGGTGAGATAACTTGTAAAGAATGCCCTCTTGTATTTTCTTCTATTAACTTCTTAAAACTTCACATGAGAAGGAAACATAATGCGTTGAGAGAAGATTTCAGATTGAAATGTCGCATTTGTAACTTGTCTTATGATAAAATTGAGAGCTTGAAAAGGCATGTGAGAAGAAAACACGACAAAGGATCTCACTGTGAAGTTTGTAATAAACAATTTGATACACGAGAGATGTATCTCAACCATTCTCATGTGAAAGCTATCAAGGAGTGCAATATTTGCGGACTGATATTCGCATCACAAGGTGGCTTAGCGAAACATTTGAGGTGCACACATAAAATAGATTCACCCAAAACTGTATTCTGCAATATATGTAACGAAGGTTTTCACGACAAACGACAGTTAAAACCGCATTTTATGAAAGTGCATTTAAAAGTATCGTACACTTGCAGATActgcaaaaaagtttttaaggcGAAAGAGAGCTATCGACGGCACGTATTATTTAAGCACCCTAATTCAAATCATGTTAACGTACACATGCAAAAATGCGAACAATGTAGTGCGACTTTTAAGGACGAATTTGATCTTTGTCGTCATATAAATACATTTCATGGTCGCCCTGAAGATATGACGAAAGAGGACAGAGAAAtgatagaaataaaaagagaagatcAGGATATAAAGGACTGTTTCCAATGCACCAAGTGCCCAGATACATATTTAACTTGGGAACAGTTGAAATTACACTACGAAGCAACTCATCACAATATAGAAGAAACACAATGTCAAATGTGTGGGGAAATACTCCCAGGAAACGAATTACAAAAACACTTAAAGAATCTTCATACGGATACTGAAATGCAGTGTAAATACTGTGAATTTAAGACGAATATTAGAGTAAGTATGACACAACATACGCTGAGGCATAAAAATGCAGAAACAATTCACTGCGAATACACTGGTTGCAAGTATAAAACGTTTTACGATGGTGCTATGGAAAAGCATAAAAGAAAACATGCTGATCTTGGAGTCAAACTCCAATGTACGCAGTGCCCGTTCCAATCGATGAATAAATACATCTTGAAATATCATGAGGAAGCTCATGAGACAGGGAAAAAACGGTATATGTGTGACCAATGTGACTATGCAACGATTTTACCAGCCAATCTTGTGCAGCATAAATATAAGCATTCTACAGTAAAGAGGTTCAAATGTGAAGTGTGTCCATTCGCAACAAAATACAATACATCACTGAGGTTCCATGTTAGGAAAAAACACTGTGATCTACCGACATTCAGttaa
- Protein Sequence
- MDLDVKVKIENDDTRKDPTSFLPEEPMSYEIKKKKKKKKKKQEDPFKDIDDKMSVKIEPITLLDPEVKIKVEDIEVELDFNDFGDNGLIHEGHHNDGDDSQEPAVKIEPQNHDAVLLTFESVINEKKPFVADSSEMFQISKNDLLVPLPTKQAPNHVCKVCHLVFQSQKTLRMHQKRKHKSFRKSFKHVCDYCGMAYEMKNSLVAHIKRKHGPDSRPDDREERTCEICALVFKGMARLRMHMRRKHDSFQESFKHVCKDCGLTYDKYRSLIVHVQRKHSNNQKPEINQWYNCPFCPKIFTKRETYARHVQRKHHVSDESIKQENNTENYLENCKNEETGEITCKECPLVFSSINFLKLHMRRKHNALREDFRLKCRICNLSYDKIESLKRHVRRKHDKGSHCEVCNKQFDTREMYLNHSHVKAIKECNICGLIFASQGGLAKHLRCTHKIDSPKTVFCNICNEGFHDKRQLKPHFMKVHLKVSYTCRYCKKVFKAKESYRRHVLFKHPNSNHVNVHMQKCEQCSATFKDEFDLCRHINTFHGRPEDMTKEDREMIEIKREDQDIKDCFQCTKCPDTYLTWEQLKLHYEATHHNIEETQCQMCGEILPGNELQKHLKNLHTDTEMQCKYCEFKTNIRVSMTQHTLRHKNAETIHCEYTGCKYKTFYDGAMEKHKRKHADLGVKLQCTQCPFQSMNKYILKYHEEAHETGKKRYMCDQCDYATILPANLVQHKYKHSTVKRFKCEVCPFATKYNTSLRFHVRKKHCDLPTFS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00327297;
- 90% Identity
- iTF_00974040;
- 80% Identity
- -