Ctra042090.1
Basic Information
- Insect
- Cosmia trapezina
- Gene Symbol
- pol
- Assembly
- GCA_905163495.1
- Location
- LR991045.1:15992440-16030067[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.2 4.4e+02 3.2 0.2 1 23 1895 1917 1895 1917 0.94 2 11 0.0017 0.23 13.5 2.6 1 23 1929 1951 1929 1951 0.96 3 11 0.00039 0.053 15.5 1.2 1 23 1957 1979 1957 1979 0.98 4 11 3.7e-05 0.005 18.7 2.3 1 23 1986 2008 1986 2008 0.99 5 11 6.7e-06 0.00091 21.0 0.4 1 23 2014 2036 2014 2036 0.93 6 11 1.9e-07 2.6e-05 25.9 0.1 1 23 2042 2064 2042 2064 0.98 7 11 6.7e-05 0.0091 17.9 2.7 1 23 2070 2093 2070 2093 0.96 8 11 0.0003 0.041 15.8 2.6 1 23 2099 2122 2099 2122 0.96 9 11 0.00023 0.032 16.2 2.3 2 23 2129 2150 2128 2150 0.97 10 11 3.2e-05 0.0044 18.9 1.0 1 23 2156 2178 2156 2178 0.97 11 11 0.23 32 6.8 0.0 1 22 2184 2205 2184 2205 0.96
Sequence Information
- Coding Sequence
- ATGCCAACGACACCAACGACGATGGTAACAAGAAATAAGAAATCCAAGAAGCAGGGAGaagaaaatgaagatgaaacAGAAAAGGATAATGAAACAGAAGAGGAGATGTTCACGTCCATCACCATGGACCAGGGTCAGTTTGCAACTCTGATGCAATCACTGCAGCAGAGTCAGGCAGAGATATTCGCGAGGCTCATCCAAGATGTTAGGACTTCGACACCGGCGCCTACTGAAGTGTCCATGTCAGCGCCCGCCGCGAACTTCTCAAAGTGCACAACTCGATTTAACGGATCGTCCGCTGATGTCGACGGGTTTATCGACGCAATAACAGTGTACAAGAACTGCCTTCAGATATCAGATGATAACGCTGTCAAAGGACTCTCCATGTTGCTAGTAGACTCGGCAGCATTATGGTGGCAGGGTATAAAAACCAGCACCACGTCATGGCTGGATGctatgcaaaaactaaaaagtgcatTCGGAGAGCATCGCCCGCCATTTCGTAtatatttggaattgttttCATTGCGACAAGGTACGgacaaaactgatttatttattgcgaAGACGAGAGCGCTTTTATCGAGATTGCCACAAGAAGATCTACGTGAAAAAGTTCAACTGGATATGGTATACGGGCTTCTCGATCGTAGAATAAAAAAGCGGCTCGATCGTAACTCCATAACATCGTTCGACCAGTTACTGCACCGTGCCAGAGCGATCGAAGAATCGTTAGAAGACAGCGCATGCGACAAGACACCGGCACTGACGCAATCGAGCGCCAGTCACCAAGCGGCCGTCGCCGGCGCCCCTTCAACTTCGGCACCAAGTGATAAAAACACTCGCAGCAAAAGACTGTCGTGCAGTTACTGCAAGAAATGGGGACATGAAAAATCGCAGTGTAAAAAGTTAataaacaatgataaaagtgATAACGTAAAAAGTGATAACGGGAAAAGTGATGATagcgtaaacaaaaataaagctattcaaTGTTATGGGTGCGGTGCCCCTAACGTTATAAAATCGAAGTGTGAAAAGTGCAAATCTAGTTCTCAAAACGCATTCTATTCGGTTACGACAACTAGCGATAGCGTAAATTCAAAAGTGCGCGGTTCCCGTAGTCATAGCGTTATCGTGCGCGATGAATGCGCGTCGGGCGAGCCGACAGCCGCAAGCGTCCCGCCACCCGCGCCGGCCCCGCAGAGTACGTGCGGCCGCGCCAAGGTCGCGAGCGGCAGCGCTGCCCGTTGCCTAGCGACCGTCCGTGAGCGTAACGATATCGTTCCGCGCGGTCGGAAGTCGCCGGGCCCGCCTCGCATCGTTCCTGCCAGTACCACAGGTTTAGAGGATCAGGAGCGTGAGGAGCTTGCCCAATTGCTCACGAATTTTCAGGATATGTTTAATTCGATTGGGGAGCCGACTCCATATGGAGAGCATCATATAGATACGGGAAATAATTTGCCGATAGCGACGCCTCCATATCGCCTGACACCTGCAAAGAAGGAGATCATGCAGCAAGAGCTTACCAAAATGTTAGCTGAAGATATTATTGAAGATTGTGAATCTGCATGGGCTGCGCCAGCCCTGCTAGTACCTAAACGTGACGGCAGTTTCCGGTTTTGCGTCGACTATCGAAAGTTAAATTCGATTACGAAGAGTGACGCCTATCCAATGCCTCGTATTGATGAACTGTTGCAATCTACTAAACGTGGACGTTGTCACATGAGTACAATAGATTTGCGATCTGGCTACTGGCAAGTGTCAGTTAAAGAAGAGGATAGGGATAAGACGGCTTTCGTGACCCCTTTCGGAACTTTTCGTTTTAAAAGGATGCCGTTCGGTCTGAAGAACGCGCCGGCTACTTTTCAGCGTCTGATAGACAGAATGCGATCTGGTTCAGCACTAAAGGACGTCACAATACTAGGATATTTAGacgatttattaattataacgcaGGGGGATTTTTCGAGGCACCTGGAAGACCTGCGAATCGTTTTTGAACAGCTGATGAAGTTCAAATTGCGTGCTAACCGAGAAAAGTGTGTGTTTGCACGAGAGTCGGTTAAATATTTAGGTCATGTGATCTCGCAGGACGGAGTCTCAGCTGATGAAAGGAAAATTCAAGCCATATTAGACATGAAAGAGCCGTCTGCACTGGGACACCTCAGAACATTTATACAAACATGTTCCTGGTTCAGGAAATTTATTCCCAAGTTTTCGGAGGTAGCAGAGCCACTGACAAGATTGACAAGGAAAAATCAACCTTGGATATGGGGACCACAACAGGCTGAAGCGTTCAGTAACTTGAAAAGGCTTTTGACGTCAGCGCCGATCCTCATACAGGCAGACTACTCCAAGCCATTCATCCTGCGCACAGATGCGAGCAACTATGCGATAGGCGCAGTGTTGCTTCAAGGTGAAAAGAATGAAGAACGACCCATTGAATTTGCCAGCCGTTTGTTATCAGCGGCTGAACGAAATTATTCGACCACGGAGCGGGAGGCTCTGGCGGTCGTCTGGGCAGTCGACCGTATGCGGGGTTACATTGATGGTCATCCAGTCGTTATAGCCAGTGATCACCAGCCCTTGAAATGGCTGCTGTCCTTGAAGTCACCTTCTGGTCGTTTAGTGCGTTGGGCACTAAAGCTGCAGGCCTATGACATCCGGTTTGAGTACACTCCCGGAAAGGTAAATGTAGTGGCCGACGCACTCAGCCGCCCTGTCTGTACAGATGAGTCTCGTGAATCCTGTGGAATATGCACTGTCATTATTGATTTACCTACGCGAGATCTCACGGAGCTACGTGCAGCACAAGAATCTGACccagatttaattaaaattgtgaaGGAATTAGAGGATATAGGAGAAGTTGCGTCTCGCCGTTGGACAGAACGTGGTTATCTCATGGAACGCGGTATCCTTTATCGCTATAACCCAGATACAGACAACGAGTCGCCGCAATTAGTAATACCTGTAAGCATACGTGAAGCTATTCTAAGAGAATGTCATGATGCTCCAATTGCAGGTCATCCTGGTATACAGAGAACATACCAGAAAATAGCTCAAAACTATTACTTCCCTGGCATGAGAAGAATAGTAACCGATTATGTAAAATCATGTTCCTCTTGTCAACGCTATAAAGCGACAAATGAAAAGCCACCTGGTCTGATTCAAACACCGATTTTAAACCAGCGCAATGAAGTCTTGGCTATCGACCTATTTGGACCACTGCCAGAGGGCGAAAACGGGGAAAAGTGGATCCTGTTAGTGGAAGATACCGCGACAAGATGGGTAGAATTGTATGCTCTCAAAGAAGCAACCTCTGTCGCCTGCGCGAAAGTACTCATAGAAGAGTATTTCCTTCGGTTCGGCTTACCACGTCGCATTATTTCGGACAATGGTGTCCAATTTGTTTCAGCGGTCATGCAGAAATGCATGTTCATTCTCGGCATTACACAAGACTTGATACCCTATTACCACCCAGAAGCCAATCCAGCTGAAAGGAAAAACCGGGATATGAAGACCCAATTGGCCCTGTTGGTTGGTACGGATCACCCTTCATGGCCTAAGCAGCTACCGATAGTACGGTTCAGTATGAACAGCGCGGTCTGTGAAACAACAGGGGTTACTCCTGCATATTTGACGTTTGCACGTGAGCTGAGGTCACCGTTAGAGGTGTACAATAATCCAAGGGCAGTCTTAGAGAAGGATAATTTTGTACCACAGATCACTCCTTAcctgacaaaatttttaaactcctTAAGTGAAGTCCGTGATAGAGTAGAAAAACTGCAGGACAGAAGGAAGACTTACGCTGATCGTTCGAGAAGAGTAGGAGAGGATTTTAAAGTAAATGACAAGGTTCTATTGACTACCCATCAGCTGAGCGACGCCAGCAAGTCAAAGACTGCTAAGTTTTTCCCTAAAAGGGATGGGCCATATGTTGTGAAGAAGAAAGTAAGTCCAACAACATACCTAATCGCGTCTGATGATAATCCTGGTGAGATATTGGGCAAATTCCACGCTAATCAGCTCACCCCTTTTCGAGGACGAGTAGATGAACGCGCTCAGCCAATGGAGCCAAAGAAAAAGCGAGGCCGACCTCGTTTACAACCTATTCGTAATGATTTTAATGTAGGGCTAGACCACGATCGAGGGCGTAATCGTGATCTAGAGGGGGACATGAACCAGTGTTGCTTTATCTGCAACAACAGAGCTGGCCTCTCACTTAGAAATGCTTCGAGCCTGTTTGGAGAACATAACACATTACAATCAGGCAAGAAAGTATCGGAAGTTGTGAGCGAAATTGTGGGCAAACCGGTGCTAGAGAATAAAGTACACACCAATATACTGTGTAAGAAATGCTTTAAGATGTGCTCTGAATATGACAGCATTCAAGTCAGattacaaacaataaaaacggATTTACTAGGACAATTCAAATTATCATTACCTAATCATAATTTAGACTATGAGAACTATGAGAAGAATGTATGTTCGCCGCCAAAGCCTAAACCGATCCTGGGAAAGAAGTTGGTGTTGCCAGCATCAAAATTACAACCAATACCACCGGATTTGTTGCTCAAAGTGGGGAAATTGGCATCATTCACCAAATCAAACATGATGTTACCACAAATTAATCCGTCTGCAGCCTCAACATTAAACTTAAAAGTAACCGTCGGATCATCAGTCCTAACACAGACAATAAAAACATCAAACAGTAAACCAATTGATGTACCTTCTTTAGACTCAAATTCCATCCTGACATCGCTCTCAAATGCTTTGAAAGATGACCTAGAAAATATGGTGACTACTCAAAGTAATATGAACCCTATGAACCAAAATAATTCAATATTGAGTTTCAATGTGAACTCTTTGCCTAAGGATTTTCTATCTGGTGCTATTTTGACGAAAATTAATGATaaagatgatgattatgataagGGGGAGGAGACGATTGATGATCACCAAATGGAGATTGATGAAGATTGTTTATCAGTGGTTCCTGTAACGTCTTCTGATAGTGGAAACTTAGGATTAGGATTAAAAGCTGAAGGACTACAGTCAAAATCCGATTCTGCTGCTGAAGTGAGCGAGTACCTAAACCTACCTTCGCTAGATGGTGACGCTGATGAAGAGAATGACCCGCAGAAGTACATCCTCGGCAAGTTGGAGATACTCAACGAAGAGGATGAAGACGATGACGACGATGAAGGGCATACAATAGTGGTAGACGGTGAAAACGGCTCAATTCTCCGCATGGTGGCTGGACAGAAGTTTATCTACGAGGGCGGAGAGATATCGCTGGTGATGCCCGATGATGATGAGCAGCAAGACGGTGATGGAGATCATCTCGAGAATGGTGATAGTCAAGATTCTAATGATGAATCTCAGATCGAGTTACAAGTATCTGGTGACGAGGAAACTGCGAACGCTATTATTGCAGCTGCTCAGGAACAAGGTGGCGCCTTCATAAAGGTGGAGTCAGGTGAGATGTTCCGCGTCAAGTCAGTGTCGAGCGCGACGCCGGAGCGAGCGGACGCGCCTCTGCAGATCGTGGCGCAGGAAGGGAACTTGTTCAAGTGTTTATTGTGCGAGAAAAATGATGAAACTCCCTCAAGTGTTGAAGATGCGGACACAATGATGCGTCACTTGAAATCGCAGCACGACGCGAGAATATACCTGTGTCGCTTCTGTGGCGCCGTCATGAGGAAACGAACGGAATATGCCACGCACATAGCGTCCCACGCGCACGACGCGTCGGGCGCGAAGGCCGGCGCGCACCGCTGCGGCACGTGCGGCAAGTGCTACAGCTCGCGCACGCTGCTGGCCGAGCACGCCAACCTGCACTCCGGCGCCAGGCCCTACGCCTGCTCCGTCTGCGGGAAGGCCTTCGCCTCCAAGTACACGCACCAAGCGCACTTGAAGACTCATGCAGTTCGCCCGCGTCCCTACAAATGCAGTCAATGCGGTAAATCGTTCCTCACGCAACAAAATCTGAATCAGCATGAGAAAACGCATTCAGGAGTCAAGGATTTCGTCTGTAATATATGCAACAAAGCCTTCAGTACGCAACACAACTTAGAAGTGCACGGCGTTGTTCACTCCGGCAACAAAGCGTTCGTGTGCACTGTGTGTGGCAAGGCGTTCGCCAGAAGAGCTGAGTTGAGAGACCATATGCGGATACACACCGGTGAGCGTCCATTTTCGTGCGATATCTGCGGGTCTCGTTTCACTCAGCGCTCGAACTTACATTCGCACCGCCGAGCGACGCACTTCGACGACAAACGATACCACTGCGAACTGTGTCCGAAGAGGTTCAAGAGGAGAAGATTACTGGAGTACCACATAAAGGCGTCGCACACTGGCGAGCGGCCGCTAAAGTGCGGCATCTGTCACTTGTCGTTCGTGTACCCCGAGCATTACAAGAAACACGTGCGGATACACAGCGGGGAGAGGCCTTATGTTTGTGAGATCTGCGGCAAATCGTTCAACTCCCGCGACAACCGCAACACGCACCGCTTCGTGCACAGCGACAAGAAGCCCTACGAGTGCGTCGCGTGCGGCGCCGGCTACATGCGCAAGCAGCTGCTGTACGCGCACATGAACACCAGCGTACGTactatagaaatataa
- Protein Sequence
- MPTTPTTMVTRNKKSKKQGEENEDETEKDNETEEEMFTSITMDQGQFATLMQSLQQSQAEIFARLIQDVRTSTPAPTEVSMSAPAANFSKCTTRFNGSSADVDGFIDAITVYKNCLQISDDNAVKGLSMLLVDSAALWWQGIKTSTTSWLDAMQKLKSAFGEHRPPFRIYLELFSLRQGTDKTDLFIAKTRALLSRLPQEDLREKVQLDMVYGLLDRRIKKRLDRNSITSFDQLLHRARAIEESLEDSACDKTPALTQSSASHQAAVAGAPSTSAPSDKNTRSKRLSCSYCKKWGHEKSQCKKLINNDKSDNVKSDNGKSDDSVNKNKAIQCYGCGAPNVIKSKCEKCKSSSQNAFYSVTTTSDSVNSKVRGSRSHSVIVRDECASGEPTAASVPPPAPAPQSTCGRAKVASGSAARCLATVRERNDIVPRGRKSPGPPRIVPASTTGLEDQEREELAQLLTNFQDMFNSIGEPTPYGEHHIDTGNNLPIATPPYRLTPAKKEIMQQELTKMLAEDIIEDCESAWAAPALLVPKRDGSFRFCVDYRKLNSITKSDAYPMPRIDELLQSTKRGRCHMSTIDLRSGYWQVSVKEEDRDKTAFVTPFGTFRFKRMPFGLKNAPATFQRLIDRMRSGSALKDVTILGYLDDLLIITQGDFSRHLEDLRIVFEQLMKFKLRANREKCVFARESVKYLGHVISQDGVSADERKIQAILDMKEPSALGHLRTFIQTCSWFRKFIPKFSEVAEPLTRLTRKNQPWIWGPQQAEAFSNLKRLLTSAPILIQADYSKPFILRTDASNYAIGAVLLQGEKNEERPIEFASRLLSAAERNYSTTEREALAVVWAVDRMRGYIDGHPVVIASDHQPLKWLLSLKSPSGRLVRWALKLQAYDIRFEYTPGKVNVVADALSRPVCTDESRESCGICTVIIDLPTRDLTELRAAQESDPDLIKIVKELEDIGEVASRRWTERGYLMERGILYRYNPDTDNESPQLVIPVSIREAILRECHDAPIAGHPGIQRTYQKIAQNYYFPGMRRIVTDYVKSCSSCQRYKATNEKPPGLIQTPILNQRNEVLAIDLFGPLPEGENGEKWILLVEDTATRWVELYALKEATSVACAKVLIEEYFLRFGLPRRIISDNGVQFVSAVMQKCMFILGITQDLIPYYHPEANPAERKNRDMKTQLALLVGTDHPSWPKQLPIVRFSMNSAVCETTGVTPAYLTFARELRSPLEVYNNPRAVLEKDNFVPQITPYLTKFLNSLSEVRDRVEKLQDRRKTYADRSRRVGEDFKVNDKVLLTTHQLSDASKSKTAKFFPKRDGPYVVKKKVSPTTYLIASDDNPGEILGKFHANQLTPFRGRVDERAQPMEPKKKRGRPRLQPIRNDFNVGLDHDRGRNRDLEGDMNQCCFICNNRAGLSLRNASSLFGEHNTLQSGKKVSEVVSEIVGKPVLENKVHTNILCKKCFKMCSEYDSIQVRLQTIKTDLLGQFKLSLPNHNLDYENYEKNVCSPPKPKPILGKKLVLPASKLQPIPPDLLLKVGKLASFTKSNMMLPQINPSAASTLNLKVTVGSSVLTQTIKTSNSKPIDVPSLDSNSILTSLSNALKDDLENMVTTQSNMNPMNQNNSILSFNVNSLPKDFLSGAILTKINDKDDDYDKGEETIDDHQMEIDEDCLSVVPVTSSDSGNLGLGLKAEGLQSKSDSAAEVSEYLNLPSLDGDADEENDPQKYILGKLEILNEEDEDDDDDEGHTIVVDGENGSILRMVAGQKFIYEGGEISLVMPDDDEQQDGDGDHLENGDSQDSNDESQIELQVSGDEETANAIIAAAQEQGGAFIKVESGEMFRVKSVSSATPERADAPLQIVAQEGNLFKCLLCEKNDETPSSVEDADTMMRHLKSQHDARIYLCRFCGAVMRKRTEYATHIASHAHDASGAKAGAHRCGTCGKCYSSRTLLAEHANLHSGARPYACSVCGKAFASKYTHQAHLKTHAVRPRPYKCSQCGKSFLTQQNLNQHEKTHSGVKDFVCNICNKAFSTQHNLEVHGVVHSGNKAFVCTVCGKAFARRAELRDHMRIHTGERPFSCDICGSRFTQRSNLHSHRRATHFDDKRYHCELCPKRFKRRRLLEYHIKASHTGERPLKCGICHLSFVYPEHYKKHVRIHSGERPYVCEICGKSFNSRDNRNTHRFVHSDKKPYECVACGAGYMRKQLLYAHMNTSVRTIEI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -