Ctra044338.1
Basic Information
- Insect
- Cosmia trapezina
- Gene Symbol
- -
- Assembly
- GCA_905163495.1
- Location
- LR991047.1:8905863-8909583[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00087 0.12 14.4 0.7 1 23 91 113 91 114 0.93 2 11 0.012 1.7 10.8 0.2 1 23 202 225 202 225 0.94 3 11 0.0031 0.41 12.7 0.1 2 23 256 278 255 278 0.95 4 11 0.075 10 8.3 2.5 2 23 301 322 300 322 0.97 5 11 0.002 0.27 13.3 0.0 1 23 326 348 326 348 0.97 6 11 0.00052 0.071 15.1 1.6 1 23 353 376 353 376 0.96 7 11 0.15 20 7.4 0.4 2 14 384 396 383 406 0.82 8 11 0.00042 0.057 15.4 0.4 2 23 414 436 413 436 0.96 9 11 5.3e-05 0.0072 18.2 1.0 1 23 442 464 442 464 0.98 10 11 2.8e-06 0.00038 22.2 1.3 1 23 470 492 470 492 0.98 11 11 4.8e-06 0.00065 21.5 1.7 1 23 498 521 498 521 0.98
Sequence Information
- Coding Sequence
- atgctattccaagGTACTCGAGGTAAACCTATCGAGGATCCGGAATGGGATCCTAAAACAAATAATGAAGATAAACCAAAACGGAAACAATGGAAAAAAAGAGACATCTCTAAGATCACTAAAGCGGGGGGGAAAAAAAGAGACATCTCTAAGATCACTGAAGCGGAGAGGTTAGAAATGATTGAAGAAATGAAGAAACACCACACAAACCTCAAAGAAATTTTAACTTGCTCCAATGCTACGCCCTTTGTTGGAGTCAATTATCAAGGCTACTTGTGTTCCTACTGCGATTCTCAGTATCCAGACCCTGCAGCCCTGAAGAAACATACTCGTGACCATCATAAAGGTACTCGAGGTAAACTTATCGAGGATCCGGAATGGGATCCTAAAACAAATAATGAAGATAAACCAAAACGGAAACAAAGGAAAAAAAGAGACATCTCAAAGATCACTAAAGCGGGGGGGAAAAAAAGAAACATCTCTAAGATCACTGAAGCGGAGAGGTTAGAAATGATGGAAGAAATGAAGAAACACCACACAAACCTCAAAGAAATTTTAACTTGCTCCAATGCTACGCCCTTTGTCGGAGTCAATTATCAAGGCTACTTGTGTTCCTACTGCGATTCTCAGTATCCAGACCCTGCAGTCCTGAAGAAACATACTCGTGACAATCATAAAGGTTTATACAACTTAGTAACTCCACAAAATAACAAATCTGCAAACGGAATAGACAACTATTGTATAAAGCTGGACATAACTGGTTTACGATGCTCACTCTGCGACACTGTCATAAACACTTTAGAAAACTTGTTAAAACATCTAGAAAGTGACCACAAAAGGGGAATACACAAGGAAATTAAAAACCAACTCTTACCATTCAAGTTTTTCGGTGATACCCTGAAATGTTATATGTGTACAAGCAAATTTCAAAAGTTTAGGAGTTTGCAACTGCATATGAACATACATTACAGGAATTTTGTTTGCGATGAGTGTGACATGGGATTTATAACCAAAGCAAGCATTAGGGGACACCTCGCCTCACATATAACAGGagtttttaaatgtaatttgtgCTCAAAAACCTTTGAAACTAAGACGAAGGCACAAAATCATGAAAAGATTGTTCACGTACATAAGCATATGACGAGTAAGTGTGGGTACTGTAATGAGAGATTCAAGAATAAAATGAGAAGGGATGAGCACTTGGTCGAAATGCATGGAGTCAAGTTAAAGATTATCAAATGTCAGGCGTGCGACAGGACGTTTCCTTACACATACGCACTAAGGATCCACACGAGAAGAGACCACTTGATGGAGAGACGGTTCAAATGTACACAATGCGATAAGGCATTTTTCCGAGCCCGCGCCTTAGAGTATCACACGGTAACGCATACAAAAACGAGAGACTTCCAATGTACTGTGTGCCTGAAGTCATATAGCCGGAAGGAAACTTTAAGGCAGCATATGGAAATACACAGTGATATTAGACGGTTTAAATGCGAGCACTGCGGTCGGGCATTCGTGCAGAAAGCCAGCTGGAAGGGGCACATGAAGAGTAAGCACGGcgaactgcagtgcgattctgtaaatatctcaccgtga
- Protein Sequence
- MLFQGTRGKPIEDPEWDPKTNNEDKPKRKQWKKRDISKITKAGGKKRDISKITEAERLEMIEEMKKHHTNLKEILTCSNATPFVGVNYQGYLCSYCDSQYPDPAALKKHTRDHHKGTRGKLIEDPEWDPKTNNEDKPKRKQRKKRDISKITKAGGKKRNISKITEAERLEMMEEMKKHHTNLKEILTCSNATPFVGVNYQGYLCSYCDSQYPDPAVLKKHTRDNHKGLYNLVTPQNNKSANGIDNYCIKLDITGLRCSLCDTVINTLENLLKHLESDHKRGIHKEIKNQLLPFKFFGDTLKCYMCTSKFQKFRSLQLHMNIHYRNFVCDECDMGFITKASIRGHLASHITGVFKCNLCSKTFETKTKAQNHEKIVHVHKHMTSKCGYCNERFKNKMRRDEHLVEMHGVKLKIIKCQACDRTFPYTYALRIHTRRDHLMERRFKCTQCDKAFFRARALEYHTVTHTKTRDFQCTVCLKSYSRKETLRQHMEIHSDIRRFKCEHCGRAFVQKASWKGHMKSKHGELQCDSVNISP*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -