Basic Information

Insect: Cosmia trapezina
Gene Symbol: -
Assembly: GCA_905163495.1
Location: LR991047.1:8845182-8856330[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 1.1 1.5e+02 4.6 0.6 1 23 484 507 484 507 0.93

2 18 0.0079 1.1 11.4 0.2 2 23 534 556 533 556 0.95

3 18 0.08 11 8.2 1.3 2 23 579 600 578 600 0.96

4 18 0.011 1.5 10.9 0.2 1 23 604 626 604 626 0.96

5 18 8.5 1.2e+03 1.8 1.7 1 23 631 654 631 654 0.92

6 18 0.042 5.7 9.1 1.9 1 23 659 682 659 682 0.95

7 18 0.056 7.6 8.7 1.7 2 23 690 712 689 712 0.96

8 18 1.9 2.6e+02 3.9 0.2 1 15 718 732 718 732 0.90

9 18 1 1.4e+02 4.7 0.3 3 23 802 823 800 823 0.90

10 18 0.027 3.7 9.7 0.2 2 23 849 871 848 871 0.93

11 18 0.0012 0.17 13.9 0.3 2 23 894 915 893 915 0.97

12 18 0.0021 0.29 13.2 0.0 1 23 919 941 919 941 0.98

13 18 3e-05 0.0041 19.0 1.9 1 23 946 969 946 969 0.98

14 18 0.4 54 6.0 0.4 2 23 977 999 976 999 0.94

15 18 8.9e-05 0.012 17.5 2.2 2 23 1007 1029 1006 1029 0.96

16 18 8.1e-05 0.011 17.6 2.5 1 23 1035 1057 1035 1057 0.98

17 18 5.3e-05 0.0071 18.2 0.6 1 23 1063 1085 1063 1085 0.99

18 18 0.00016 0.021 16.7 4.4 1 23 1091 1114 1091 1114 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	1.1	1.5e+02	4.6	0.6	1	23	484	507	484	507	0.93
2	18	0.0079	1.1	11.4	0.2	2	23	534	556	533	556	0.95
3	18	0.08	11	8.2	1.3	2	23	579	600	578	600	0.96
4	18	0.011	1.5	10.9	0.2	1	23	604	626	604	626	0.96
5	18	8.5	1.2e+03	1.8	1.7	1	23	631	654	631	654	0.92
6	18	0.042	5.7	9.1	1.9	1	23	659	682	659	682	0.95
7	18	0.056	7.6	8.7	1.7	2	23	690	712	689	712	0.96
8	18	1.9	2.6e+02	3.9	0.2	1	15	718	732	718	732	0.90
9	18	1	1.4e+02	4.7	0.3	3	23	802	823	800	823	0.90
10	18	0.027	3.7	9.7	0.2	2	23	849	871	848	871	0.93
11	18	0.0012	0.17	13.9	0.3	2	23	894	915	893	915	0.97
12	18	0.0021	0.29	13.2	0.0	1	23	919	941	919	941	0.98
13	18	3e-05	0.0041	19.0	1.9	1	23	946	969	946	969	0.98
14	18	0.4	54	6.0	0.4	2	23	977	999	976	999	0.94
15	18	8.9e-05	0.012	17.5	2.2	2	23	1007	1029	1006	1029	0.96
16	18	8.1e-05	0.011	17.6	2.5	1	23	1035	1057	1035	1057	0.98
17	18	5.3e-05	0.0071	18.2	0.6	1	23	1063	1085	1063	1085	0.99
18	18	0.00016	0.021	16.7	4.4	1	23	1091	1114	1091	1114	0.97

Sequence Information

Coding Sequence: ATGGTTAATATATATTATCAGAACGTACGAGGGCTGCGCTCGAAAACAAATTCGTTATATCGTAATGTTTGCATGAATTCATACGATGTTATTATATTTACGGAAACATGGTTAGTGGACAGTATTAGTAATAGTGAGTTGTTTGACGGTCGATATCTTGTGTGGAGGCGGGACCGGGATTACGGTCGAACGGCACAATCGCGGGGTGGTGGAGTGCTGATCGCGGTGAGAAGTGATCTGACCGTTGTGGAAAGATGTGACTGGCGTACCTCCGCTGAGGATATATGGGTATCCATCATTCTGAAGAGGTCTAGACCAGCGGTAAGTTACAACATTAATATCTGCGGCCTGTATTTGTGCAAGGAAAATGTTGGTAATTCGTATATAGATCAATTACAAAACTTCCACCATAAACTTAGCCATTTAGTAACCGCCCACCCATTGGATACATTTATCGTAACTGGTGATTTTAACTTTGGTGGCGATGTGGAATGGCAACATTCCGACGACAGCCCGGGATTGTGTCCTGAGAAAGTATCTGTACGATCTATTTTGGATTTCTTTGACACAATAAATGCGAGTAACCTATCCCAGTTTAATTGTGAGCGTAACGTCAATGACTCAGACTCTGATGATCTAGATACTAGTATAGACACTAATTCTTCCAGCTCAGTGAATCTGAGTACCGTTAGCGTCTGCCCTGACATGGTTCTCAAGTTACTTAAAGATCTGGACCTAACTAAATCTGGTGGGCCGGATCTGATACCCCCTATTTTTATAGTCAATTGTGCAAAGAGTCTTGTGGAGCCAGTCTGCTTGTTGTTTGAACGGTCGTTGAGAGAGGGTGTTGTCCCGAAGATATGGAAATCGGCATTCATCACACCTATTTTTAAAAAGGGGGATAAATCTAAGATAGACAATTACCGTCCCATATCTAAACTATGTCTTTTCTCTAAAGTTCTGGAGCGAGTGGTGTACACGGAAGTTTATTCATCCATGCAGCGCTGTTTTGGCGACGAACAACATGGTTTCCTCAGGAAACGGTCGACTGCTTCCAACTTGGTATTGTCCAATGAATTAATAACCACTGGGATGGATGAAGGATGCCAAGTCGATGTTATCTACACGGACTACAGCAAGTGTTTCGACCGAATAGATCACCGTGTGCTTCTTCAGAAGCTTTTAGCTGCAGGAATACACGGTCAACTTCAAGCAGATAGAGTCGCATTTAAAATAGAAATCGACCAACCAGATGAAgctaagaaaaaagaaaaaacacaaCTGAACATTGCTGGTATGATTGTGGCGAACCGTAACGCAGCAAAAACGTCCTGCAAACCTACAGTGTCGAAAGGGTATAGTGCTGAAATTAACAAGCATAAAACGAATATTAAAGAAATAATGCGTTGTTCTAACGCTACACCAATAAGACTATGTGGAGATAAGGGTTACATGTGCTGTTACTGTAAAGAACAATACTTAGAGCCGGCAGATCTCAAGGCACACACCCTACAAGCCCATGAGGACGTTACCAAAGCTTACTTCATAAAAAATATGAGCATGTACAATTACATCATCAAATTAGACATCACTGATTTGCAGTGCAATTTATGCAATAAAAGTATCGACACTACTGAAGAATTAATGGATCACTTGAAGAATgaacacaataaaattatacattCTGACATTCAAAATCACATAGTCCCTTTCAAGTTTACCACAAAAGCTCttgaatgttttatttgcaagaatgtTTTCCACAAATTCAATTTATTACTGATACATATGAATATACACATTAGGAACTATATATGTGATATCTGCGATGCCGGTTACGCCAATTACTGTAGCCTGAAGGTGCATAAAGCCATACACAAAactgaaaatttcaactgttcaTCTTGCTCTATGAAGTTCGAAACACTGGCTAAGAGATACATGCATGTACAGAGTAAGCATGCTAACACACGTCACAAATGTGGGTACTGTAACGAAAGATTCAACGATTATAGGAAGAAGGAAGTTCATCTGATATCTGTCCATGGACTGAAAAAACAGAAGTCGAAGTGCCAAGCATGTGATAGAGAATTTGATCACCGGAAACGTTTAGCCGTGCACGTGAAAAGAGACCATTTGATGCTAAGACCACATGCTTGCGAAGTGTGTGAGATGACATTTTTCACTCCAAGTCACGGACGGAGAACTAGGATAATCAAAATAGAAAAACCGACAAAAGCAACCGTTGAATTGAAGTTCATCTCAAAACTAACAACAAGAGACTCAAATACCATCCTAAAAGGCTCAATATCAGAAACTGTGAAGAACAAAATGAATCTAAAAAATATATTGCTCAACTCTAACGCAAACCCAATaagatgtaaagatggtcatggATATGGCTGTTCGTTCTGTCCAAAACAATTTTTGGAGCCGACTGCTCTCAAAAAGCATTTTCTGGAAGAACATAACAATGACAAGCTGATAAAGTATATGACCGCTAAGCTATTTGATCATGTCATCAAGTTAGATATAACGTACCTGAATTGTGCTCTTTGTGACAAAGATGTCAAACATTTGGATGACCTTGTAGCCCATCTGAAGGACGAACACAACAAGTCCATGTATCTAGACGTTAAAAGCCAAATCGTCCCGTTCAGATTCGACTCACCCGAACTAAAATGTGTCATATGCTCCGCAGAATTCAGTTCATTTAAACTTTTACAAGAGCATATGAATTCTCATTTCCGTAATTATATTTGTGAAATATGTGGAGCAGGGTTTGTGACTGACAGACTCCTAGTAAGCCACGTCAAACGGCATGATAGCGGAGAGTATAAATGTGATCAATGTGATAAAACTTTTACAAACCAGATTAAAATACGCGAGCACATAAAACGAACACATCTAGGTCAGAGCAAGAGAAATAAATGCAATTACTGCGCGGAAAGATTCGTTGATTACTGGAAGAAGATGGATCATATGGTGAAAGAGCATGGAATGCCTCCTGTCGTCCTTAAATGTTCCGCTTGCGATCGAACTTTTAGTAACCAGCGTTCCTTATCACGGCACACGAAGAAAGATCATCTTTTGGAGAGAAGGCACAAGTGTAGCGAATGTGACATGAGATTCTTTGGAAAGAGTGGTTTGCAGAAACACATGGCCAAGCACACAGGGCTGAGGCAGTTCAGATGTGAAGTTTGCTTAAAGGCTTATGGAAGGAAGAATACGCTAAGAGAGCATATGAGGATCCATGCGAATGACAGGAGATTCGCTTGCACTCACTGTGGCCAAGCGTTCGTCCAAAAATGTAGCTGGCGGAGTCACATGCGTTCTAAACATGGAGTAGCAGCATAA
Protein Sequence: MVNIYYQNVRGLRSKTNSLYRNVCMNSYDVIIFTETWLVDSISNSELFDGRYLVWRRDRDYGRTAQSRGGGVLIAVRSDLTVVERCDWRTSAEDIWVSIILKRSRPAVSYNINICGLYLCKENVGNSYIDQLQNFHHKLSHLVTAHPLDTFIVTGDFNFGGDVEWQHSDDSPGLCPEKVSVRSILDFFDTINASNLSQFNCERNVNDSDSDDLDTSIDTNSSSSVNLSTVSVCPDMVLKLLKDLDLTKSGGPDLIPPIFIVNCAKSLVEPVCLLFERSLREGVVPKIWKSAFITPIFKKGDKSKIDNYRPISKLCLFSKVLERVVYTEVYSSMQRCFGDEQHGFLRKRSTASNLVLSNELITTGMDEGCQVDVIYTDYSKCFDRIDHRVLLQKLLAAGIHGQLQADRVAFKIEIDQPDEAKKKEKTQLNIAGMIVANRNAAKTSCKPTVSKGYSAEINKHKTNIKEIMRCSNATPIRLCGDKGYMCCYCKEQYLEPADLKAHTLQAHEDVTKAYFIKNMSMYNYIIKLDITDLQCNLCNKSIDTTEELMDHLKNEHNKIIHSDIQNHIVPFKFTTKALECFICKNVFHKFNLLLIHMNIHIRNYICDICDAGYANYCSLKVHKAIHKTENFNCSSCSMKFETLAKRYMHVQSKHANTRHKCGYCNERFNDYRKKEVHLISVHGLKKQKSKCQACDREFDHRKRLAVHVKRDHLMLRPHACEVCEMTFFTPSHGRRTRIIKIEKPTKATVELKFISKLTTRDSNTILKGSISETVKNKMNLKNILLNSNANPIRCKDGHGYGCSFCPKQFLEPTALKKHFLEEHNNDKLIKYMTAKLFDHVIKLDITYLNCALCDKDVKHLDDLVAHLKDEHNKSMYLDVKSQIVPFRFDSPELKCVICSAEFSSFKLLQEHMNSHFRNYICEICGAGFVTDRLLVSHVKRHDSGEYKCDQCDKTFTNQIKIREHIKRTHLGQSKRNKCNYCAERFVDYWKKMDHMVKEHGMPPVVLKCSACDRTFSNQRSLSRHTKKDHLLERRHKCSECDMRFFGKSGLQKHMAKHTGLRQFRCEVCLKAYGRKNTLREHMRIHANDRRFACTHCGQAFVQKCSWRSHMRSKHGVAA*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -