Ctra044342.1
Basic Information
- Insect
- Cosmia trapezina
- Gene Symbol
- -
- Assembly
- GCA_905163495.1
- Location
- LR991047.1:8923584-8929257[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.38 51 6.1 3.3 1 23 99 122 99 122 0.94 2 20 0.27 37 6.5 0.0 2 23 149 171 148 171 0.92 3 20 0.059 8 8.6 0.4 1 23 193 215 193 215 0.98 4 20 0.00089 0.12 14.4 0.3 1 23 219 241 219 241 0.98 5 20 0.017 2.3 10.3 0.9 1 23 246 269 246 269 0.88 6 20 0.012 1.6 10.8 0.7 2 23 277 299 276 299 0.96 7 20 2.1e-06 0.00029 22.6 3.8 2 23 307 329 306 329 0.96 8 20 3.9e-05 0.0053 18.6 6.2 1 23 335 357 335 357 0.97 9 20 2e-05 0.0027 19.5 1.8 1 23 363 385 363 385 0.98 10 20 0.76 1e+02 5.1 3.2 1 13 391 403 391 408 0.93 11 20 0.032 4.4 9.4 1.6 1 23 490 513 490 513 0.92 12 20 0.49 67 5.7 0.1 2 23 540 562 539 562 0.94 13 20 0.0012 0.16 14.0 1.5 2 23 585 606 584 606 0.97 14 20 5.4e-05 0.0073 18.2 1.6 1 23 610 632 610 632 0.98 15 20 0.48 65 5.8 1.7 1 13 637 649 637 651 0.90 16 20 0.0029 0.39 12.8 1.5 2 23 668 690 667 690 0.95 17 20 4.7e-06 0.00064 21.5 2.9 2 23 698 720 697 720 0.96 18 20 6.3e-05 0.0086 18.0 3.3 1 23 726 748 726 748 0.97 19 20 4.2e-06 0.00057 21.7 1.1 1 23 754 776 754 776 0.98 20 20 8.9e-06 0.0012 20.7 2.0 1 23 782 805 782 805 0.98
Sequence Information
- Coding Sequence
- ATGTATTatgGTCTCGGCTGCGTTATTGAAATTAAGCTAGAACCAGAAGTAAGTAAAATATTGGAATCACCAATGAAACCGACATCTGCAAAAGCAAACGTCAAAAAAGATGATAGGACTAATACAGTCTCGAAAAAAAGAAGCAGTCAGAGATCCACAGAAGATGATTTAAAGGTTCAAAGGGTCGGACCTCTTAAAGGTGACAAAATTGAATTAGAAAAACATTTGCAGAATATTCGCAATATAATCTTACATTCTAATGCTACTCCTATCAGAAGACACACACCAGTTGGTTACCATTGTAGCTTCTGCTTAGAGCACTTTACCATACCGAGAGACCTTAAGATACATACACTACAAAACCATGACAACGAAACTAAAAACACAGTTATGAAAGGCTGCACTTTAACTTATTATGCCGTAAAACTAGACATCACTGATCTGAAGTGTGAAATATGCGGTAAAGATATTGACGGATTAGAGCCACTGATGGATCATTTACAATCCGATCACAATAAAACTGTGCATACAGACATAAAAAATCATATATTGCCTTTCAAATTTCAAGAGGACACGTTCAAGTGCGTGCTATGCCCGAATATGTACGAACGCTTTAAGCTGATTCAAGAACACATGAATGTGCACTACAATAATTATATATGTGAAATCTGCAACTCTCCCTACGTTAATAAGATAACTCTTAACAAACATTTGTCGAGACACAAACAGGGAGAGTTCTCTTGCAAGTTTTGTCCAAAAGTATTTGACACAAATGGTAAGAAATTAGCCCACGAAAATTTCGTACATAAAATTGGCcataaaagaaataaatgtGTATATTGTAATGAGAAATTCAGTTCTTACATTCAAAGGAATGAACACATGGTGACTGAGCATGGTGCAGAGCCTCGTGTCCTCAAATGTATGGATTGTGACAAGACGTTTACAAGAAGAGACCAATTGCTTCGACACCATAGACGGGATCACTTACTCGAAAGGAAGCACGAATGCGAGCACTGCGATATGAAATTTTATAGAAAGAGGGAACTAACAAAACACATGTTAAAACATACAGGCGAAAAACTGCACAAGTGCGAGGTCTGCCTCAAAGCTTTTGGACGGAAAAATACTTTGAAGGAGCATATGAGAATACATGCGAATGATAGGAGATTCAAATGCGACCAGTGTGGACAAGCGTTTGTGCAGAAATGTCTCGGCTGCGATACAGAAATTAATGTAGAAACAGATGTAAGTAAAATATTGAAAGCGATCAAAGCACCGAGATCTGCAAAAGCAAACGACAATAAAAGTGATTGGAAGAGTAGCGATCAGGCGTTAGAAGAAGAAATATTAAGAGTTCGACCTCTTAAAGCAGACAAAAGAGAGATAGACAAACATTTGCAGAATATTCGTAACATACtcttttattctaatgctactCCTATCAGAAAGCAGACTGGGAATGGTTACTTGTGCGGGTTCTGTTCAGAGCACTTTAGCATGCCGAAAGACCTTAAGATACATACATTACAAAAACATGACAACGAAACAAAAAGTAGTTTCATGAAAGGCAGCCTTGTCTTTAACTACGTCGTTAAATTAGACATCACTGGTCTGAAGTGTGAAATATGTAATCGAAATATTGACGGGTTAGAGCCACTGATGAATCATTTACAATCTGatcattataaaattatacataaagatataaaaaattacattttgtcaTTTAAATTTGAAGGAGATACGTTACAGTGCGCGTTATGCTCTAAAACCTATGACCACTTTAAGCTGCTACAAGAACACATGAATGTGCACTACAACAATTTTAACTGTGAACTCTGCAACTCTCCTTTCGTTAATAAGAGAACCCTTAAAAGTCACATGAGGAGACACAAACAAGGAGAGTTTTATTGTAAGTTTTGTCCAAAAGTATTTGACACAAATGTCAGGAAGTTATGCCACGAAAGGTTCATACATATTCTTGaccaaaaaagaaataaatgtcCACATTGCGATGAGAAATTCGTTTCTTACACACAGAGGAATGACCATATGGTAAAAGTGCATGGTGCAGAGCCTCGTGTCCTCAAATGTATGACCTGTGACAAGACGTTTACCACAAAAGAAAGTTTGACTCGACACACTAAACGGGATCATTTACTTGAAAGGAGACACGAGTGTGAGCAATGCGATATGAAAttttatagaaagaaagaacTGAATATGCACATGTTAAAACATACGGGTGATAAAAAGTACAGTTGTGATATTTGTTTGAAAGCTTTTGGACGGAAAGATCATTTAAGAGAGCATTTGAGAATACATGCGGACGACAGACGATATAGATGCGAACAGTGTGGACACGCGTTTGTGCAGAAGGCCAGCTGGAGAAGCCATATGCGGAAGCGACATGATGAGCAGGTTTAG
- Protein Sequence
- MYYGLGCVIEIKLEPEVSKILESPMKPTSAKANVKKDDRTNTVSKKRSSQRSTEDDLKVQRVGPLKGDKIELEKHLQNIRNIILHSNATPIRRHTPVGYHCSFCLEHFTIPRDLKIHTLQNHDNETKNTVMKGCTLTYYAVKLDITDLKCEICGKDIDGLEPLMDHLQSDHNKTVHTDIKNHILPFKFQEDTFKCVLCPNMYERFKLIQEHMNVHYNNYICEICNSPYVNKITLNKHLSRHKQGEFSCKFCPKVFDTNGKKLAHENFVHKIGHKRNKCVYCNEKFSSYIQRNEHMVTEHGAEPRVLKCMDCDKTFTRRDQLLRHHRRDHLLERKHECEHCDMKFYRKRELTKHMLKHTGEKLHKCEVCLKAFGRKNTLKEHMRIHANDRRFKCDQCGQAFVQKCLGCDTEINVETDVSKILKAIKAPRSAKANDNKSDWKSSDQALEEEILRVRPLKADKREIDKHLQNIRNILFYSNATPIRKQTGNGYLCGFCSEHFSMPKDLKIHTLQKHDNETKSSFMKGSLVFNYVVKLDITGLKCEICNRNIDGLEPLMNHLQSDHYKIIHKDIKNYILSFKFEGDTLQCALCSKTYDHFKLLQEHMNVHYNNFNCELCNSPFVNKRTLKSHMRRHKQGEFYCKFCPKVFDTNVRKLCHERFIHILDQKRNKCPHCDEKFVSYTQRNDHMVKVHGAEPRVLKCMTCDKTFTTKESLTRHTKRDHLLERRHECEQCDMKFYRKKELNMHMLKHTGDKKYSCDICLKAFGRKDHLREHLRIHADDRRYRCEQCGHAFVQKASWRSHMRKRHDEQV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -