Basic Information

Insect: Cosmia trapezina
Gene Symbol: -
Assembly: GCA_905163495.1
Location: LR991047.1:7912084-7917548[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 25 0.007 0.94 11.5 0.1 1 23 47 70 47 70 0.95

2 25 1 1.4e+02 4.7 0.1 2 23 97 118 96 118 0.95

3 25 1.1 1.4e+02 4.7 1.3 1 23 140 162 140 162 0.97

4 25 3.2e-05 0.0044 18.9 1.0 1 23 166 188 166 188 0.98

5 25 1.2 1.6e+02 4.6 0.2 1 23 193 216 193 216 0.88

6 25 0.013 1.8 10.7 0.6 1 23 222 245 222 245 0.90

7 25 0.013 1.8 10.7 0.1 1 23 294 316 294 316 0.97

8 25 6.9 9.3e+02 2.1 2.6 2 23 340 362 339 362 0.93

9 25 0.00018 0.025 16.5 3.8 1 23 384 406 384 406 0.99

10 25 0.0034 0.46 12.5 3.3 2 23 411 432 410 432 0.95

11 25 0.024 3.3 9.8 1.9 1 23 440 463 440 463 0.92

12 25 0.01 1.4 11.0 0.7 1 23 469 492 469 492 0.97

13 25 0.072 9.8 8.4 0.7 1 23 498 521 498 521 0.96

14 25 7.5e-05 0.01 17.7 0.8 1 23 527 549 527 549 0.97

15 25 4e-06 0.00054 21.7 0.8 1 23 555 577 555 577 0.99

16 25 0.2 28 6.9 1.7 1 18 583 600 583 600 0.94

17 25 0.21 28 6.9 0.0 3 23 707 728 705 728 0.94

18 25 0.0086 1.2 11.3 3.8 1 23 750 772 750 772 0.96

19 25 0.00018 0.024 16.6 0.6 1 23 776 798 776 798 0.98

20 25 0.011 1.6 10.9 0.3 1 23 803 826 803 826 0.92

21 25 9.6e-05 0.013 17.4 2.1 1 23 832 855 832 855 0.98

22 25 0.18 24 7.1 1.8 1 23 862 885 862 885 0.94

23 25 0.00063 0.085 14.8 1.5 1 23 891 913 891 913 0.95

24 25 1.4e-05 0.0019 20.0 2.6 1 23 919 941 919 941 0.98

25 25 9.4e-07 0.00013 23.7 2.7 1 23 947 969 947 970 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	25	0.007	0.94	11.5	0.1	1	23	47	70	47	70	0.95
2	25	1	1.4e+02	4.7	0.1	2	23	97	118	96	118	0.95
3	25	1.1	1.4e+02	4.7	1.3	1	23	140	162	140	162	0.97
4	25	3.2e-05	0.0044	18.9	1.0	1	23	166	188	166	188	0.98
5	25	1.2	1.6e+02	4.6	0.2	1	23	193	216	193	216	0.88
6	25	0.013	1.8	10.7	0.6	1	23	222	245	222	245	0.90
7	25	0.013	1.8	10.7	0.1	1	23	294	316	294	316	0.97
8	25	6.9	9.3e+02	2.1	2.6	2	23	340	362	339	362	0.93
9	25	0.00018	0.025	16.5	3.8	1	23	384	406	384	406	0.99
10	25	0.0034	0.46	12.5	3.3	2	23	411	432	410	432	0.95
11	25	0.024	3.3	9.8	1.9	1	23	440	463	440	463	0.92
12	25	0.01	1.4	11.0	0.7	1	23	469	492	469	492	0.97
13	25	0.072	9.8	8.4	0.7	1	23	498	521	498	521	0.96
14	25	7.5e-05	0.01	17.7	0.8	1	23	527	549	527	549	0.97
15	25	4e-06	0.00054	21.7	0.8	1	23	555	577	555	577	0.99
16	25	0.2	28	6.9	1.7	1	18	583	600	583	600	0.94
17	25	0.21	28	6.9	0.0	3	23	707	728	705	728	0.94
18	25	0.0086	1.2	11.3	3.8	1	23	750	772	750	772	0.96
19	25	0.00018	0.024	16.6	0.6	1	23	776	798	776	798	0.98
20	25	0.011	1.6	10.9	0.3	1	23	803	826	803	826	0.92
21	25	9.6e-05	0.013	17.4	2.1	1	23	832	855	832	855	0.98
22	25	0.18	24	7.1	1.8	1	23	862	885	862	885	0.94
23	25	0.00063	0.085	14.8	1.5	1	23	891	913	891	913	0.95
24	25	1.4e-05	0.0019	20.0	2.6	1	23	919	941	919	941	0.98
25	25	9.4e-07	0.00013	23.7	2.7	1	23	947	969	947	970	0.95

Sequence Information

Coding Sequence: ATGCGAAGGCGACGCCGCGCCAACAACCAGCTTCCCGAAGAATCAGAGAAAAGAATATCCAAAACCATGATGCGTCGAAACGCAATGGTCCTTTTAGAATGTTCGACAGCCTGGGCCTTTCGGTGGTTCCATAGCGCTTTTTACTGCTCATACTGCGATGCTAAGTTCGTCGATGTACCTCTACTTCGCTTACATGTTAAAGCAAATCATCTAAACGACTTACCCACTGACAGAATCTTCTCaaagttaaaagaaaataatatggTCAAAGTCGATGTAGCTGAGCTTAGCTGTAGGTTGTGTAGCAGGCTTCTAAATAGTATTGATGCTTTAAAAGATCACATATTGATACACGGCAAGACTTTGAACGTAGAATACAGTGATGGGGTCCTACCTTTCAAGTTAGATGAAGAAGGCTTCACCTGCCAGCTGTGTTTCGCCCAATTTCTAACTTTCGCCAAAATGAACGAGCATATGAACACACACTTTCAAAACTACATTTGCGATTCTTGCGGAAAAGCTTTTGTTTCAAAATCAAGGTTCAGGAAACACGTACAGTCACACGAAAAAGGGAGTTTTCCTTGCGGGGAGTGTGGTGAAGTTTTGGAAACGCGAGCGTCTCGAATGTGCCATATAATGCGAATCCATAGAAAAGGCGTTCGCTACGCTTGCCCGAGATGCCCCGAAGTTTTTACAACTTACCACACGAGAGCAAAACATTTGGTAGAAACCCACGCCCAACAGAGAAAAGAATACTACTggcCCGTCGAACTCAAAGTAAAATGGAGGCCGACACGCAAGTATAACGATCACAGAGATAACGCCGCTATCATTCTCGAAAGTTCCAACGCTTGTCCTTTTAGGTGGAGACGAGGGGCCTTCACTTGCGCTTACTGTCCGCTCTCCTTCGGAGATTTCAGTGGTGTGAAGGACCATACCATAGTACACCCTAACAGGATCGAAGCCATCCGCAAGGCGCGTCCATTTGCAAACGTCAAAATGGAAGTTACTGAGCTACGATGCGAATTATGTCTCATGCGAATGACGAGTTTAGATCATCTTTGCGAACACTTACTCCAAAATCACAACAAACCAATAATCGATAAACATGGTATAGGAGTCACACCTTACTATCTAGCAGGGAAAGAATACAAGTGCACTCATTGTGATGAAACATTTGTTCTTTTCTCTAAATTGAACTCACATTTGAACAAGCACTATCCAAATTGCATTTGTTTTCAATGCGGTAAAGCATTCTCTTCCGTACACAGGCTGAAATCCCACTTACTCATCCATGATTCGGCACCCACAGCCCAATTTAAATGCACTAAATGCGAACAAGTTTTTGCCACACGCGTCTTAAGGAACAATCATACAACCCAAAAACATGGCCCAGAATTCAGATACAGGTGTCCTTACTGTAAAGACACTTTCAAAAGCTACGCTGACAGAGGAAGGCATTTGAAAGTGGCGCACGACAAAAAAATCGAGTATCCCTGCAATTTGTGTCCAGCAATTTTTGCTATGTGTAATCAAAGGACTAAACATATAAAACAAGTTCATGTGGGAATTAAGTCATTCGCTTGCACTTTTTGCTCGTATAAATTCGTAACAGCTGCTCAGTTGAGGAGTCATATGATTAAACATGGAGGGGAGAGGAAGTATCAATGTGAGGTGTGTAAGAAAGCGTATGCTAGGACCAAAACTTTGCGGGAGCATATGAGGATACATAATAATGATAAGAGATTTGTTTGTCAGTACTGTAATACTGCGTATGTTCAGAAATGTAGTTTACAAAgaaGAAAAACTGAGGAAACAGTGATAAAGCTGGAAGTGGAATCCGATACTGAAAATAACAGAGCCTCAATTATCTCTACAGCACGAGAGGGCTACCAGAGACGGGCTATCTTCAGAAATAATATAGCCATTATCGTGGAATCATGCACCGCGTACCCTTTCAAGTATAGAAAAGGAACTTACCTATGTTTCTTTTGTAAAAACACTTTTCTAGAACCAGAAAAGTTGAGAGAACACAACCGACTCCAACACTCCGAAGTAAAACAGCTTTTAAAACCTAGAAAGTACGAACCTCTAAAAATGGACTTCGCAACAACGATTTGCAAAATGTGCGGCACAGAAATTGGTGATTATGCTGAACTGAAAATCCACCTCACTGTAGAACATGGCAAGATAATAGACTGCACTTACGGAGATAGCGTGCTTCCATACAAACTGAGCAAAGAGGAACACAGCTGTCAAATCTGTGGGAAAACATACGAAATGTTCCTGAGCCTACACAAACATATGAATGATCATTACGAACATTTTATTTGTGAAACTTGTGGGAAGAGATTCGCTACTTCTCAACGAATGGTGAATCATGCTAGGACTCATGAAAGAGGAGACTTCCCTTGCAAAAGATGTACAGAAACGTTCCCTTCTTACGCTTCCTTATACGCTCACAATGCTAAAGTCCATAGGTCTAATAAGAGATATAAGTGTCCTATATGCGACGAGAAATTTGCCTCATACAAGCATAGACTGAAACATTTAAACACTATACATGGAGAGAAAACTGCTGTCTTTCCCTGTCCATCATGTCCAAGAGTTTTCGACCTATGCAGCCGTAGGACATCCCACATACGATTCCAACATTTGCAAGAACGAAATCACATTTGTTCAATTTGCGGAATGAAGTTTTTCACGAACTATGAGTTACAGGAGCATTCTATCAAGCATGGTGGGGAGAGAATATATCATTGTGATGTTTGCAAGAAATCTTACGCGAGGTTAAAGACTTTGAGAGAGCATATGCGGATACATAACAATGATCGACGTTTTATTTGCCCAGTTTGCGGGCAGTCCTTCATTCAGAACTGTAGCTTGAAACAACATATGAGAGTTCATCATCCCGCTCATTTGAAAGACGTGTTTtag
Protein Sequence: MRRRRRANNQLPEESEKRISKTMMRRNAMVLLECSTAWAFRWFHSAFYCSYCDAKFVDVPLLRLHVKANHLNDLPTDRIFSKLKENNMVKVDVAELSCRLCSRLLNSIDALKDHILIHGKTLNVEYSDGVLPFKLDEEGFTCQLCFAQFLTFAKMNEHMNTHFQNYICDSCGKAFVSKSRFRKHVQSHEKGSFPCGECGEVLETRASRMCHIMRIHRKGVRYACPRCPEVFTTYHTRAKHLVETHAQQRKEYYWPVELKVKWRPTRKYNDHRDNAAIILESSNACPFRWRRGAFTCAYCPLSFGDFSGVKDHTIVHPNRIEAIRKARPFANVKMEVTELRCELCLMRMTSLDHLCEHLLQNHNKPIIDKHGIGVTPYYLAGKEYKCTHCDETFVLFSKLNSHLNKHYPNCICFQCGKAFSSVHRLKSHLLIHDSAPTAQFKCTKCEQVFATRVLRNNHTTQKHGPEFRYRCPYCKDTFKSYADRGRHLKVAHDKKIEYPCNLCPAIFAMCNQRTKHIKQVHVGIKSFACTFCSYKFVTAAQLRSHMIKHGGERKYQCEVCKKAYARTKTLREHMRIHNNDKRFVCQYCNTAYVQKCSLQRRKTEETVIKLEVESDTENNRASIISTAREGYQRRAIFRNNIAIIVESCTAYPFKYRKGTYLCFFCKNTFLEPEKLREHNRLQHSEVKQLLKPRKYEPLKMDFATTICKMCGTEIGDYAELKIHLTVEHGKIIDCTYGDSVLPYKLSKEEHSCQICGKTYEMFLSLHKHMNDHYEHFICETCGKRFATSQRMVNHARTHERGDFPCKRCTETFPSYASLYAHNAKVHRSNKRYKCPICDEKFASYKHRLKHLNTIHGEKTAVFPCPSCPRVFDLCSRRTSHIRFQHLQERNHICSICGMKFFTNYELQEHSIKHGGERIYHCDVCKKSYARLKTLREHMRIHNNDRRFICPVCGQSFIQNCSLKQHMRVHHPAHLKDVF*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -