Basic Information

Insect: Cosmia trapezina
Gene Symbol: -
Assembly: GCA_905163495.1
Location: LR991038.1:14176204-14188395[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 3.1e-06 0.00042 22.1 2.6 1 23 56 78 56 78 0.98

2 15 0.00014 0.018 16.9 0.6 1 23 93 115 93 115 0.98

3 15 4.3e-05 0.0059 18.5 3.1 1 23 130 152 130 152 0.98

4 15 3e-07 4.1e-05 25.3 1.5 1 23 167 189 167 189 0.99

5 15 0.00015 0.021 16.7 0.0 1 23 196 218 196 218 0.97

6 15 9.5e-06 0.0013 20.6 2.1 1 23 224 246 224 246 0.99

7 15 0.031 4.1 9.5 1.8 1 23 253 275 253 275 0.98

8 15 5.1e-07 6.9e-05 24.6 2.3 1 23 281 303 281 303 0.99

9 15 0.035 4.8 9.3 1.8 1 23 310 332 310 332 0.98

10 15 2.1e-06 0.00028 22.6 1.5 1 23 338 360 338 360 0.99

11 15 0.0004 0.054 15.5 0.7 1 23 367 389 367 389 0.99

12 15 2.3e-06 0.00031 22.5 1.9 1 23 395 417 395 417 0.98

13 15 0.0017 0.23 13.5 0.3 1 20 423 442 423 445 0.93

14 15 2.8e-05 0.0038 19.1 1.3 2 23 452 473 451 473 0.96

15 15 2.5e-06 0.00034 22.4 1.3 1 23 479 502 479 502 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	3.1e-06	0.00042	22.1	2.6	1	23	56	78	56	78	0.98
2	15	0.00014	0.018	16.9	0.6	1	23	93	115	93	115	0.98
3	15	4.3e-05	0.0059	18.5	3.1	1	23	130	152	130	152	0.98
4	15	3e-07	4.1e-05	25.3	1.5	1	23	167	189	167	189	0.99
5	15	0.00015	0.021	16.7	0.0	1	23	196	218	196	218	0.97
6	15	9.5e-06	0.0013	20.6	2.1	1	23	224	246	224	246	0.99
7	15	0.031	4.1	9.5	1.8	1	23	253	275	253	275	0.98
8	15	5.1e-07	6.9e-05	24.6	2.3	1	23	281	303	281	303	0.99
9	15	0.035	4.8	9.3	1.8	1	23	310	332	310	332	0.98
10	15	2.1e-06	0.00028	22.6	1.5	1	23	338	360	338	360	0.99
11	15	0.0004	0.054	15.5	0.7	1	23	367	389	367	389	0.99
12	15	2.3e-06	0.00031	22.5	1.9	1	23	395	417	395	417	0.98
13	15	0.0017	0.23	13.5	0.3	1	20	423	442	423	445	0.93
14	15	2.8e-05	0.0038	19.1	1.3	2	23	452	473	451	473	0.96
15	15	2.5e-06	0.00034	22.4	1.3	1	23	479	502	479	502	0.97

Sequence Information

Coding Sequence: ATGGATACGATGCGGTACACACATACCGCACTGTGTCGTTACTGTCACAGCGAAATCGATTGTGTGTTCTTGTTAACGTGGTGTAGACAAACGAGCGTGTGTTGTTGGAATGTGGCCTGGGTTCTAGATGAGCACATGCGCGCGTTGATGGTGAAGGACCGGCCCTACAAGTGTGAGCTCTGTCAGATGCGGTTCACGCAGAGCTCCAGCCTCAACCGACACAAGAAAATTCACACGGAGGAACACAGACGTGCGCTGCTGGCTAAGGATCGACCCTACCAATGCGGCGTCTGCTTTGTGAGATTCACCCAGAAATCAAGTTTGGGCCGGCACGGAAAAATACATACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGACGACATGGGAAAATACACACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAATGCGACATCTGTGACAAGCGGTTCACTCAGAAGTCAAGCCTTGGCACTCATAAACGTATACACACCGTGCAAGGGCGTCCTTTCGCGTGCGGGCAATGCCCGGCGGCGTTCGCCCGCCGCCCCTACCTGGACATTCACATGCGCACGCATACAGGCGAGCGGCCCTATCAGTGCGACGCGTGTCTGAAGCGCTTCACGCAGAAGTCCAGCCTCAATATACATAAGAGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCCGCCGCCTTCACCTGCAAGCAATACCTGGAGATACACACGCGCACGCACACCGGCGAGCGGCCCTATCAGTGCGACATCTGCCTGAAGCGCTTCACGCAGAAGTCCAGTCTCAACATCCACAAGCGGACGCACTCAGTGCAGGGGCGGCCCTTCCAGTGTCTGCAGTGCCCGGCGGCCTTCACGTGCAAGCAGTATCTGGAGATCCACAACCGCACACACACCGGCGAGCGGCCCTACCAGTGTGACGTATGCCTCAAGAGATTCGCGCAAAAATCTACACTCAATATACACAAAAGAACGCACACAGTGCAAGGGCGTCCGTACCAATGCATGGAGTGCCCGGCGGCGTTCACTTGCAAGCCGTATCTGGAGATACACATGCGTACGCACACGGGGGAAAGGCCGTTCGAGTGCGATGTCTGTTACAAACGCTTCACGCAGAAATCCACGCTCAACATTCACAAGCGAATTCATACCGGTGAACGTCCTTATGCTTGTGATATTTGTCAGAAACGTTTTGCTGTGAAGAGTTACGTAACAGCGCACAGATGGTCTCACGTGGCCGACAAGCCGCTCAACTGCGACCGCTGCTCCATGTCGTTCACGTCCAAGTCTCAGTTCGCGCTGCACATTCGCACGCACACCACCGGCTCCTGCTACGAGTGCAGCGTCTGTGGACGCTCCTTCGTAAGAGACAGCTATCTAATAagACACCACAACCGTGTCCACCGCGAGAACCATAGCAATGTGTCAGCGAACAGCATCGGCACCATCAACAATGTTGCTACCAACACCAACAACTCTAACAACAGCAACTTTGACTCGCCCGGCGTTTGTGACTTAAGCTTTGTTCCAATGGTGAATCGTTACATGACATCTCAAGGGACCCAAGTGTCCATGCAGGATACCAGCAAAATGTCTGCGATGTCACCACAGTCTATTGCGTCTATTTCGTCGCCCCCTCCCTCGCATACCCCTACGCCCCAGCCCCAGATGTCTGGTCAGATGCATCTTGCAGACTGA
Protein Sequence: MDTMRYTHTALCRYCHSEIDCVFLLTWCRQTSVCCWNVAWVLDEHMRALMVKDRPYKCELCQMRFTQSSSLNRHKKIHTEEHRRALLAKDRPYQCGVCFVRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTVQGRPFACGQCPAAFARRPYLDIHMRTHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMSFTSKSQFALHIRTHTTGSCYECSVCGRSFVRDSYLIRHHNRVHRENHSNVSANSIGTINNVATNTNNSNNSNFDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTSKMSAMSPQSIASISSPPPSHTPTPQPQMSGQMHLAD*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00041088;
90% Identity: iTF_00041088;
80% Identity: -