Ctra030201.1
Basic Information
- Insect
- Cosmia trapezina
- Gene Symbol
- -
- Assembly
- GCA_905163495.1
- Location
- LR991036.1:20830305-20840918[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-06 0.0014 19.8 0.0 1 39 20 61 20 63 0.78 2 2 0.68 5.1e+02 2.0 0.0 9 20 308 319 302 320 0.79
Sequence Information
- Coding Sequence
- atgacGCCTTCAAAAGTTCTGCAAATAACTAAGAGGATGAAAAAGACTGTCCAATACTCCGAAGAAGATCTACAAAAAGCTCTTCATGACTTTCGGGAGAAAGAAAAGGGAATAAGAGAGACTTGTCGACTTTGTCGTACATATGGGATTCCTCGAACGACGATACAGGATTTATTAAGTGGGAAGAGACGTGACGCTATCGAAGCTAGAGGACCAGATCCTGTACTAGGAGTGGAGGGTGAAAAACCATGGGTCAAAGAATCCATCACCAACGATTTTAATGATTGGGTGGACCACAACTGTATAAAAAGAAACAATAATGCTGCTGTGATTGATTGTCACAGATCGCACAAGTCACTAGTCTTGAGTGCCACGTGCGAAAAGCTAGGCATAATTTTGTATGCCCTTCCTCCGAACACCACCCACATGCTCCAACCAGAAGACTGGCAGCAGTTCACGTTCGACGTGGCGGTGGACATGCGCCTGCATCCGAGTGCGAGCTCGTTCGCAGGCCTGCACGGGGACACGGAGCTGACGGACTTCGAGCTGCGCGGCGAGGACGGAGGCGTGCGCATACACCGCACCGTGCTGGCGGCCGCCAGCCCCGTGCTGCGCCACCGCATGCGGGGCGGTACGTGGCGCGAGACCGTTGAGGGGCTCGTGGACGTCACCGGCACGTCCAAGGGGCCTTGGACGTGCCGGTGTGGCCCCACTCTTGAGCACTTGAAGAACTATGTGTATCTACACGTGCTACCCGAGTCGGGCTTGGAGCAGCTACTGCTGTTCTTCTCGTTCTACATCATGCCGGAGCTGGAGTGGCTCTGCGTGAATAGATTGGTGCGCGACGTAAGCGCGGAGAACGCGTGCGATCTCATCGAGTTCGCGGTCAAGAACAACGTGAAGCGACTGCTGCTCGCGGTGCTCGAGTGCGTGCAGAACGGCGCCATCAGTGTCTCGGAAATGCGCGACCACATTGATGCGAGCGAGTGA
- Protein Sequence
- MTPSKVLQITKRMKKTVQYSEEDLQKALHDFREKEKGIRETCRLCRTYGIPRTTIQDLLSGKRRDAIEARGPDPVLGVEGEKPWVKESITNDFNDWVDHNCIKRNNNAAVIDCHRSHKSLVLSATCEKLGIILYALPPNTTHMLQPEDWQQFTFDVAVDMRLHPSASSFAGLHGDTELTDFELRGEDGGVRIHRTVLAAASPVLRHRMRGGTWRETVEGLVDVTGTSKGPWTCRCGPTLEHLKNYVYLHVLPESGLEQLLLFFSFYIMPELEWLCVNRLVRDVSAENACDLIEFAVKNNVKRLLLAVLECVQNGAISVSEMRDHIDASE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -