Ctra047347.1
Basic Information
- Insect
- Cosmia trapezina
- Gene Symbol
- Kdm5a
- Assembly
- GCA_905163495.1
- Location
- LR991050.1:6074164-6074901[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2e-11 8.8e-08 33.9 0.0 40 89 5 51 1 51 0.88
Sequence Information
- Coding Sequence
- ATGAAATTTTGGGTAGATGAAGAGGGCGGCTTTGAAGGCTGTAACACTCCTAAAAAATGGCGTAAGATTGCAAACGCAATGGGTTACAGTCAGCACATGGGTACTATGAATTTTCTTAGaagtaattatgaaaaaattctGCTTCCCTatgaaatatttgaaaaaagtaaaGCAGATATATTAAAAACTGTTAAGAAGACTGACCACAAATTTGAATTAAAAGAAGATGAAGTTGGAAAACCTCAGATTACAGAAGTACCTATAGAAAGGATAACAAAGATCAAAGTAGAATTTAAAGAAGAGAAACCTCACACAAGTATAAAGAAAACAAAGACGGGATCTGATATCAAGCCAGATATGGATAGCTCTAAGAATAAAGTTGAGAGTGAAGAGATAAAACGCAACAGAGAACTAAGAAGGTTAGCTTGCTATGGACCTGGACCCAAAATGCCTGGACTAAATGATGAAGAATTTGATATTACAAAATCAAGGAAGAGGCCCCGCTATGATCTTGATCCATTAGCAGTTTATCAATGTGCTATTTGCCAAAAAGACCATAGGGATGATGTGCTGTTAATTTGTAATGGTTGTTCTGACACCTATCATACATTTTGTTTAAGACCTCCGCTAAATTTGGTACCAGATGGAGATTGGCGTTGCCCTTGTTGGTCGCGGCGGACAAACGATCGCCGTCAACGGGCCGTCACTTTCGGTTCAAATAAACTCGTTTCACGTTGA
- Protein Sequence
- MKFWVDEEGGFEGCNTPKKWRKIANAMGYSQHMGTMNFLRSNYEKILLPYEIFEKSKADILKTVKKTDHKFELKEDEVGKPQITEVPIERITKIKVEFKEEKPHTSIKKTKTGSDIKPDMDSSKNKVESEEIKRNRELRRLACYGPGPKMPGLNDEEFDITKSRKRPRYDLDPLAVYQCAICQKDHRDDVLLICNGCSDTYHTFCLRPPLNLVPDGDWRCPCWSRRTNDRRQRAVTFGSNKLVSR*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -